Wall clock time and date at job start Fri Apr 10 2020 17:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47334 * 2 1 4 4 C 1.34806 * 126.59570 * 124.99347 * 3 2 1 5 5 C 1.36596 * 106.83749 * 179.73513 * 4 3 2 6 6 C 1.47526 * 125.76997 * 180.21696 * 5 4 3 7 7 O 1.21591 * 120.00195 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00050 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00155 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47034 * 35.00154 * 9 8 6 11 11 C 1.53000 * 109.47239 * 155.00298 * 9 8 6 12 12 N 1.46500 * 109.46998 * 304.99821 * 11 9 8 13 13 C 1.36939 * 119.99898 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99970 * 0.02562 * 13 12 11 15 15 C 1.38809 * 119.99690 * 180.02562 * 13 12 11 16 16 N 1.31624 * 119.99755 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00458 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47172 * 89.99886 * 17 15 13 19 19 H 1.48500 * 109.47135 * 210.00229 * 17 15 13 20 20 H 1.48497 * 109.46874 * 330.00006 * 17 15 13 21 21 C 1.53005 * 109.46962 * 275.00370 * 9 8 6 22 22 C 1.53001 * 117.49801 * 128.74642 * 21 9 8 23 23 C 1.52999 * 117.49846 * 60.08430 * 21 9 8 24 24 N 1.34399 * 108.45911 * 0.24576 * 5 4 3 25 25 N 1.28753 * 109.52471 * 359.97438 * 24 5 4 26 26 H 1.09004 * 109.46633 * 60.00851 * 1 2 3 27 27 H 1.09003 * 109.47142 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47529 * 300.00361 * 1 2 3 29 29 H 1.08996 * 109.47180 * 239.99303 * 2 1 3 30 30 H 1.09004 * 109.46807 * 119.99915 * 2 1 3 31 31 H 1.08002 * 126.58390 * 0.02562 * 4 3 2 32 32 H 0.96997 * 119.99957 * 0.02562 * 8 6 5 33 33 H 1.08998 * 109.46921 * 65.00271 * 11 9 8 34 34 H 1.08999 * 109.46666 * 184.99861 * 11 9 8 35 35 H 0.96995 * 120.00254 * 0.02562 * 12 11 9 36 36 H 0.96999 * 120.00162 * 179.97438 * 16 15 13 37 37 H 1.09001 * 115.54515 * 274.41279 * 21 9 8 38 38 H 1.08998 * 117.49546 * 359.97438 * 22 21 9 39 39 H 1.09000 * 117.49598 * 145.02380 * 22 21 9 40 40 H 1.08998 * 117.50006 * 214.97601 * 23 21 9 41 41 H 1.08998 * 117.50242 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8715 1.9320 0.8866 5 6 3.0551 3.2306 0.5049 6 6 3.9172 4.2157 1.1851 7 8 4.5417 3.8944 2.1776 8 7 4.0125 5.4720 0.7064 9 6 4.8691 6.4501 1.3815 10 1 5.7507 5.9477 1.7793 11 6 5.3020 7.5247 0.3821 12 7 5.9399 6.8886 -0.7732 13 6 6.4109 7.6567 -1.8043 14 1 6.3124 8.7316 -1.7657 15 6 7.0149 7.0539 -2.8991 16 7 7.4681 7.7923 -3.8901 17 14 7.1845 5.1948 -2.9662 18 1 5.9857 4.6117 -3.6203 19 1 8.3971 4.8362 -3.7450 20 1 7.3058 4.6588 -1.5867 21 6 4.0931 7.1024 2.5276 22 6 4.7548 7.1231 3.9069 23 6 3.5726 6.1883 3.6386 24 7 2.3170 3.4593 -0.5948 25 7 1.6867 2.3850 -0.9211 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.3266 1.4396 1.7333 32 1 3.5140 5.7285 -0.0852 33 1 4.4283 8.0863 0.0513 34 1 6.0094 8.2020 0.8606 35 1 6.0280 5.9233 -0.8080 36 1 7.8904 7.3711 -4.6550 37 1 3.4784 7.9592 2.2513 38 1 5.7427 6.6716 3.9980 39 1 4.5750 7.9932 4.5384 40 1 2.6157 6.4438 4.0936 41 1 3.7826 5.1222 3.5529 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699591126.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:41 Heat of formation + Delta-G solvation = 75.468756 kcal Electronic energy + Delta-G solvation = -23550.757395 eV Core-core repulsion = 20082.314934 eV Total energy + Delta-G solvation = -3468.442461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.24551 -40.92028 -38.41402 -36.75659 -36.37761 -35.00166 -33.35548 -32.35982 -31.43645 -29.87860 -25.97823 -25.53250 -24.67210 -23.16809 -22.97892 -22.74322 -21.64032 -21.23624 -19.90210 -18.93572 -17.54177 -17.27651 -17.19492 -16.71302 -16.42146 -16.08051 -15.71280 -15.51393 -15.32592 -14.87192 -14.76278 -14.63956 -13.89072 -13.79602 -13.54998 -13.37007 -13.07854 -12.94768 -12.72239 -12.62477 -12.53396 -12.26738 -12.14797 -12.03851 -11.86067 -11.37217 -11.34310 -11.14294 -11.04688 -10.92486 -10.37644 -9.98486 -9.33608 -8.05762 -5.38120 0.14776 0.59852 1.12868 1.31377 1.33955 1.39361 2.07096 2.21728 2.42926 2.99262 3.21219 3.26750 3.41207 3.44033 3.80451 3.86231 3.94192 3.98286 4.06271 4.17789 4.24424 4.27500 4.34216 4.42845 4.62595 4.62864 4.74132 4.85627 4.88879 4.91959 5.06771 5.08976 5.21970 5.31915 5.35964 5.48975 5.52397 5.74151 6.18377 6.42430 6.89053 7.04076 7.12865 7.79827 7.97653 9.15816 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.011317 B = 0.005450 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.606692 B = 5136.190042 C = 7101.715649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 N -0.349 5.349 4 C 0.111 3.889 5 C -0.130 4.130 6 C 0.606 3.394 7 O -0.558 6.558 8 N -0.700 5.700 9 C 0.176 3.824 10 H 0.076 0.924 11 C 0.152 3.848 12 N -0.757 5.757 13 C -0.229 4.229 14 H 0.067 0.933 15 C -0.054 4.054 16 N -0.979 5.979 17 Si 0.944 3.056 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.265 1.265 21 C -0.171 4.171 22 C -0.159 4.159 23 C -0.180 4.180 24 N -0.232 5.232 25 N -0.091 5.091 26 H 0.052 0.948 27 H 0.110 0.890 28 H 0.058 0.942 29 H 0.110 0.890 30 H 0.145 0.855 31 H 0.242 0.758 32 H 0.409 0.591 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.363 0.637 36 H 0.258 0.742 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.855 -17.788 16.492 28.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.014 4.014 3 N -0.134 5.134 4 C -0.047 4.047 5 C -0.270 4.270 6 C 0.391 3.609 7 O -0.437 6.437 8 N -0.349 5.349 9 C 0.072 3.928 10 H 0.094 0.906 11 C 0.025 3.975 12 N -0.403 5.403 13 C -0.360 4.360 14 H 0.084 0.916 15 C -0.246 4.246 16 N -0.630 5.630 17 Si 0.773 3.227 18 H -0.210 1.210 19 H -0.218 1.218 20 H -0.190 1.190 21 C -0.191 4.191 22 C -0.196 4.196 23 C -0.217 4.217 24 N -0.105 5.105 25 N -0.072 5.072 26 H 0.071 0.929 27 H 0.129 0.871 28 H 0.077 0.923 29 H 0.128 0.872 30 H 0.163 0.837 31 H 0.258 0.742 32 H 0.245 0.755 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.196 0.804 36 H 0.067 0.933 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.132 0.868 40 H 0.119 0.881 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.207 -17.515 15.811 28.071 hybrid contribution 0.667 -0.866 -0.339 1.145 sum -14.540 -18.381 15.472 28.083 Atomic orbital electron populations 1.22073 0.92466 1.04987 1.02644 1.22601 0.97149 0.73911 1.07690 1.50998 1.30638 1.13186 1.18581 1.23882 0.91961 0.92739 0.96119 1.21585 1.08965 0.96601 0.99867 1.16909 0.79879 0.81340 0.82762 1.90692 1.47173 1.79480 1.26338 1.45887 1.47298 1.10306 1.31416 1.20715 0.92144 0.88341 0.91615 0.90592 1.21060 0.96180 0.93892 0.86343 1.42706 1.72243 1.05004 1.20364 1.19065 1.29369 0.91638 0.95905 0.91554 1.25316 1.01341 1.01332 0.96630 1.69847 1.47020 1.35842 1.10262 0.85572 0.77156 0.82234 0.77779 1.20954 1.21763 1.18998 1.22537 1.04547 1.02574 0.89438 1.23001 0.97413 1.02286 0.96931 1.23217 0.98612 0.98409 1.01497 1.74669 1.05497 1.19490 1.10890 1.81889 1.21050 0.90965 1.13262 0.92899 0.87122 0.92324 0.87160 0.83712 0.74214 0.75510 0.94029 0.93248 0.80430 0.93289 0.86546 0.89277 0.86825 0.88140 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 10.11 71.98 0.73 -0.46 16 2 C 0.10 0.76 7.26 86.38 0.63 1.39 16 3 N -0.35 -6.37 3.69 -347.10 -1.28 -7.65 16 4 C 0.11 2.16 11.27 83.85 0.95 3.10 16 5 C -0.13 -3.71 6.99 40.82 0.29 -3.43 16 6 C 0.61 19.22 7.15 86.69 0.62 19.84 16 7 O -0.56 -18.50 13.88 -4.00 -0.06 -18.55 16 8 N -0.70 -22.96 4.49 -445.70 -2.00 -24.96 16 9 C 0.18 5.70 2.43 44.99 0.11 5.81 16 10 H 0.08 2.69 7.33 -2.39 -0.02 2.67 16 11 C 0.15 5.77 5.80 86.38 0.50 6.27 16 12 N -0.76 -36.47 5.24 -343.45 -1.80 -38.26 16 13 C -0.23 -13.30 10.47 84.03 0.88 -12.41 16 14 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 15 C -0.05 -3.29 5.50 84.86 0.47 -2.82 16 16 N -0.98 -63.84 13.97 21.65 0.30 -63.54 16 17 Si 0.94 48.26 27.74 68.60 1.90 50.17 16 18 H -0.28 -14.40 7.11 99.48 0.71 -13.69 16 19 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 20 H -0.26 -12.77 6.52 99.48 0.65 -12.12 16 21 C -0.17 -4.49 5.36 -10.79 -0.06 -4.55 16 22 C -0.16 -3.63 10.18 30.62 0.31 -3.32 16 23 C -0.18 -4.41 9.74 30.62 0.30 -4.11 16 24 N -0.23 -7.46 12.04 -49.99 -0.60 -8.06 16 25 N -0.09 -2.55 13.64 37.02 0.51 -2.04 16 26 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.15 -0.05 8.08 -2.39 -0.02 -0.07 16 31 H 0.24 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.41 13.97 8.29 -92.71 -0.77 13.20 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.36 17.45 5.20 -92.71 -0.48 16.97 16 36 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 37 H 0.12 2.82 8.11 -2.39 -0.02 2.80 16 38 H 0.09 2.16 8.05 -2.39 -0.02 2.14 16 39 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.10 2.84 5.01 -2.39 -0.01 2.83 16 Total: -1.00 -78.02 347.34 2.44 -75.58 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.25 Total: 32.02 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 5.72 Total: 5.30 kcal Atomic # 7 Polarization: -139.64 SS G_CDS: -4.88 Total: -144.52 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.06 Total: -18.55 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 1.90 Total: 50.17 kcal Total: -78.02 2.44 -75.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699591126.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.052 kcal (2) G-P(sol) polarization free energy of solvation -78.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds