Wall clock time and date at job start Fri Apr 10 2020 17:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46494 * 109.47202 * 2 1 4 4 C 1.34819 * 126.59349 * 125.29218 * 3 2 1 5 5 C 1.36597 * 106.83676 * 180.13228 * 4 3 2 6 6 C 1.47524 * 125.76858 * 179.90225 * 5 4 3 7 7 O 1.21595 * 120.00258 * 359.71419 * 6 5 4 8 8 N 1.34779 * 120.00149 * 179.71874 * 6 5 4 9 9 C 1.46497 * 120.00134 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47432 * 325.00808 * 9 8 6 11 11 C 1.52999 * 109.47333 * 204.99712 * 9 8 6 12 12 N 1.46506 * 109.46684 * 55.00709 * 11 9 8 13 13 C 1.36938 * 119.99589 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00325 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99408 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00325 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99550 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47397 * 90.00455 * 17 15 13 19 19 H 1.48510 * 109.46813 * 210.00284 * 17 15 13 20 20 H 1.48495 * 109.47179 * 329.99902 * 17 15 13 21 21 C 1.53009 * 109.46622 * 85.00058 * 9 8 6 22 22 C 1.52996 * 117.49844 * 8.75027 * 21 9 8 23 23 C 1.52999 * 117.50079 * 300.08711 * 21 9 8 24 24 N 1.34396 * 108.46267 * 359.63666 * 5 4 3 25 25 N 1.28770 * 109.52251 * 0.22708 * 24 5 4 26 26 H 1.08999 * 109.47376 * 59.99974 * 1 2 3 27 27 H 1.09003 * 109.47208 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47000 * 299.99660 * 1 2 3 29 29 H 1.09000 * 109.47000 * 240.00340 * 2 1 3 30 30 H 1.08999 * 109.47376 * 120.00026 * 2 1 3 31 31 H 1.07999 * 126.58108 * 0.02562 * 4 3 2 32 32 H 0.97001 * 119.99536 * 0.02562 * 8 6 5 33 33 H 1.09000 * 109.47486 * 295.00644 * 11 9 8 34 34 H 1.09001 * 109.47362 * 174.99921 * 11 9 8 35 35 H 0.96995 * 120.00050 * 359.72237 * 12 11 9 36 36 H 0.97000 * 119.99693 * 180.02562 * 16 15 13 37 37 H 1.09000 * 115.54486 * 154.41272 * 21 9 8 38 38 H 1.08994 * 117.50040 * 359.97438 * 22 21 9 39 39 H 1.08998 * 117.50004 * 145.02314 * 22 21 9 40 40 H 1.08998 * 117.49656 * 214.97947 * 23 21 9 41 41 H 1.09001 * 117.49398 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8758 1.9304 0.8835 5 6 3.0505 3.2322 0.5084 6 6 3.9083 4.2188 1.1918 7 8 4.5330 3.8974 2.1843 8 7 3.9997 5.4766 0.7161 9 6 4.8511 6.4565 1.3951 10 1 4.8240 6.2785 2.4701 11 6 4.3406 7.8680 1.0987 12 7 2.9271 7.9644 1.4718 13 6 2.2512 9.1421 1.2953 14 1 2.7601 10.0000 0.8813 15 6 0.9118 9.2332 1.6484 16 7 0.2917 8.1878 2.1533 17 14 -0.0101 10.8401 1.4082 18 1 -0.6219 10.8623 0.0553 19 1 -1.0761 10.9574 2.4355 20 1 0.9346 11.9777 1.5431 21 6 6.2893 6.3181 0.8915 22 6 6.5331 5.3970 -0.3056 23 6 6.9820 4.9690 1.0939 24 7 2.3134 3.4607 -0.5919 25 7 1.6877 2.3846 -0.9218 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.3350 1.4365 1.7271 32 1 3.5011 5.7331 -0.0754 33 1 4.4506 8.0783 0.0348 34 1 4.9183 8.5916 1.6738 35 1 2.4690 7.1927 1.8399 36 1 -0.6443 8.2515 2.3997 37 1 6.9029 7.2157 0.9691 38 1 5.6690 4.8893 -0.7341 39 1 7.3074 5.6883 -1.0153 40 1 8.0514 4.9790 1.3043 41 1 6.4133 4.1802 1.5862 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699591127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:44 Heat of formation + Delta-G solvation = 102.304484 kcal Electronic energy + Delta-G solvation = -23590.924458 eV Core-core repulsion = 20123.645682 eV Total energy + Delta-G solvation = -3467.278776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.15595 -39.70727 -37.00120 -35.54810 -34.81849 -33.19451 -31.40120 -31.23039 -30.19424 -28.02262 -24.80004 -24.16149 -23.43086 -22.16858 -21.81300 -21.40841 -20.44270 -19.51845 -18.04905 -17.13271 -16.33776 -16.17682 -15.85640 -15.73882 -14.77662 -14.71450 -14.58991 -14.21732 -13.63649 -13.44969 -13.17218 -13.05036 -12.76377 -12.66298 -12.23770 -12.01504 -11.79309 -11.58580 -11.31541 -11.16627 -11.09314 -10.83167 -10.77050 -10.40387 -10.19177 -10.05899 -9.76617 -9.70380 -9.50505 -9.22379 -8.85007 -8.57352 -6.88907 -5.71048 -3.00630 1.15351 1.86411 1.96878 3.42505 3.47968 3.52476 3.54298 3.55818 4.08898 4.15010 4.27742 4.47771 4.61832 4.69993 4.77424 4.97229 5.02055 5.15003 5.18173 5.25397 5.27279 5.45025 5.60961 5.61623 5.71998 5.80966 5.90104 5.93456 6.08257 6.09200 6.30410 6.31848 6.40145 6.54972 6.56882 6.76106 6.98571 7.74453 7.80659 8.08951 8.46335 8.51787 9.58340 10.14611 10.49886 11.51315 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.011462 B = 0.004925 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.162647 B = 5684.183673 C = 7656.647302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 N -0.365 5.365 4 C 0.088 3.912 5 C -0.095 4.095 6 C 0.606 3.394 7 O -0.545 6.545 8 N -0.690 5.690 9 C 0.168 3.832 10 H 0.093 0.907 11 C 0.148 3.852 12 N -0.731 5.731 13 C -0.241 4.241 14 H 0.071 0.929 15 C -0.011 4.011 16 N -0.930 5.930 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.160 4.160 22 C -0.178 4.178 23 C -0.187 4.187 24 N -0.196 5.196 25 N -0.065 5.065 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.203 0.797 32 H 0.413 0.587 33 H 0.027 0.973 34 H 0.035 0.965 35 H 0.386 0.614 36 H 0.254 0.746 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.578 -18.341 -4.173 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 N -0.150 5.150 4 C -0.069 4.069 5 C -0.234 4.234 6 C 0.390 3.610 7 O -0.423 6.423 8 N -0.340 5.340 9 C 0.063 3.937 10 H 0.111 0.889 11 C 0.020 3.980 12 N -0.376 5.376 13 C -0.372 4.372 14 H 0.089 0.911 15 C -0.208 4.208 16 N -0.579 5.579 17 Si 0.738 3.262 18 H -0.217 1.217 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.179 4.179 22 C -0.215 4.215 23 C -0.224 4.224 24 N -0.069 5.069 25 N -0.046 5.046 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.219 0.781 32 H 0.250 0.750 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.220 0.780 36 H 0.064 0.936 37 H 0.128 0.872 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.148 -18.064 -4.750 19.999 hybrid contribution -0.502 0.375 0.501 0.802 sum 6.647 -17.689 -4.249 19.369 Atomic orbital electron populations 1.22093 0.92756 1.03503 1.04335 1.21985 0.96917 0.76406 1.04827 1.50602 1.31652 1.12281 1.20510 1.23334 0.93360 0.94212 0.95956 1.21537 1.07674 0.94883 0.99350 1.16718 0.79813 0.81590 0.82876 1.90710 1.46444 1.79444 1.25668 1.45788 1.46934 1.09529 1.31748 1.20815 0.86466 0.88780 0.97600 0.88884 1.20918 0.87689 0.91422 0.98004 1.42343 1.05205 1.13278 1.76778 1.19207 0.92640 0.90177 1.35195 0.91116 1.24739 0.96889 0.97418 1.01722 1.69676 1.10656 1.28787 1.48741 0.86196 0.79609 0.83129 0.77272 1.21729 1.21866 1.20768 1.22694 0.97148 0.94913 1.03173 1.22904 1.03057 1.04338 0.91243 1.23335 1.00278 0.99311 0.99491 1.74706 1.04216 1.17677 1.10337 1.81979 1.20451 0.90318 1.11835 0.90635 0.90043 0.91523 0.88540 0.87846 0.78064 0.75022 0.95527 0.94689 0.77972 0.93583 0.87171 0.88941 0.89525 0.89776 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.12 37.15 0.38 -0.69 16 2 C 0.12 0.72 7.26 -4.05 -0.03 0.69 16 3 N -0.36 -4.05 3.69 -61.07 -0.23 -4.27 16 4 C 0.09 1.05 11.27 -16.83 -0.19 0.86 16 5 C -0.10 -1.50 6.99 -83.55 -0.58 -2.08 16 6 C 0.61 10.46 6.65 -12.47 -0.08 10.37 16 7 O -0.54 -9.97 13.89 5.28 0.07 -9.90 16 8 N -0.69 -12.10 3.05 -54.85 -0.17 -12.26 16 9 C 0.17 2.94 2.59 -67.93 -0.18 2.77 16 10 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 11 C 0.15 2.98 5.80 -4.04 -0.02 2.95 16 12 N -0.73 -18.70 5.44 -59.90 -0.33 -19.03 16 13 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 14 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 15 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 16 N -0.93 -28.78 13.06 55.49 0.72 -28.05 16 17 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.16 -2.34 5.71 -90.62 -0.52 -2.86 16 22 C -0.18 -2.44 9.74 -26.69 -0.26 -2.70 16 23 C -0.19 -2.63 9.82 -26.69 -0.26 -2.89 16 24 N -0.20 -3.32 12.04 32.85 0.40 -2.93 16 25 N -0.07 -0.99 13.65 60.35 0.82 -0.16 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.10 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.20 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.41 7.55 8.29 -40.82 -0.34 7.21 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.39 10.59 7.33 -40.82 -0.30 10.29 16 36 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.11 1.48 8.11 -51.93 -0.42 1.05 16 38 H 0.09 1.35 6.67 -51.93 -0.35 1.01 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.12 1.84 5.01 -51.93 -0.26 1.58 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -34.26 347.53 -6.31 -40.58 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -5.83 Total: 13.99 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -2.00 Total: -0.97 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: 1.23 Total: -66.70 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.26 -6.31 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699591127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.882 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds