Wall clock time and date at job start Fri Apr 10 2020 17:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46494 * 109.47202 * 2 1 4 4 C 1.34819 * 126.59349 * 125.29218 * 3 2 1 5 5 C 1.36597 * 106.83676 * 180.13228 * 4 3 2 6 6 C 1.47524 * 125.76858 * 179.90225 * 5 4 3 7 7 O 1.21595 * 120.00258 * 359.71419 * 6 5 4 8 8 N 1.34779 * 120.00149 * 179.71874 * 6 5 4 9 9 C 1.46497 * 120.00134 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47432 * 325.00808 * 9 8 6 11 11 C 1.52999 * 109.47333 * 204.99712 * 9 8 6 12 12 N 1.46506 * 109.46684 * 55.00709 * 11 9 8 13 13 C 1.36938 * 119.99589 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00325 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99408 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00325 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99550 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47397 * 90.00455 * 17 15 13 19 19 H 1.48510 * 109.46813 * 210.00284 * 17 15 13 20 20 H 1.48495 * 109.47179 * 329.99902 * 17 15 13 21 21 C 1.53009 * 109.46622 * 85.00058 * 9 8 6 22 22 C 1.52996 * 117.49844 * 8.75027 * 21 9 8 23 23 C 1.52999 * 117.50079 * 300.08711 * 21 9 8 24 24 N 1.34396 * 108.46267 * 359.63666 * 5 4 3 25 25 N 1.28770 * 109.52251 * 0.22708 * 24 5 4 26 26 H 1.08999 * 109.47376 * 59.99974 * 1 2 3 27 27 H 1.09003 * 109.47208 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47000 * 299.99660 * 1 2 3 29 29 H 1.09000 * 109.47000 * 240.00340 * 2 1 3 30 30 H 1.08999 * 109.47376 * 120.00026 * 2 1 3 31 31 H 1.07999 * 126.58108 * 0.02562 * 4 3 2 32 32 H 0.97001 * 119.99536 * 0.02562 * 8 6 5 33 33 H 1.09000 * 109.47486 * 295.00644 * 11 9 8 34 34 H 1.09001 * 109.47362 * 174.99921 * 11 9 8 35 35 H 0.96995 * 120.00050 * 359.72237 * 12 11 9 36 36 H 0.97000 * 119.99693 * 180.02562 * 16 15 13 37 37 H 1.09000 * 115.54486 * 154.41272 * 21 9 8 38 38 H 1.08994 * 117.50040 * 359.97438 * 22 21 9 39 39 H 1.08998 * 117.50004 * 145.02314 * 22 21 9 40 40 H 1.08998 * 117.49656 * 214.97947 * 23 21 9 41 41 H 1.09001 * 117.49398 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8758 1.9304 0.8835 5 6 3.0505 3.2322 0.5084 6 6 3.9083 4.2188 1.1918 7 8 4.5330 3.8974 2.1843 8 7 3.9997 5.4766 0.7161 9 6 4.8511 6.4565 1.3951 10 1 4.8240 6.2785 2.4701 11 6 4.3406 7.8680 1.0987 12 7 2.9271 7.9644 1.4718 13 6 2.2512 9.1421 1.2953 14 1 2.7601 10.0000 0.8813 15 6 0.9118 9.2332 1.6484 16 7 0.2917 8.1878 2.1533 17 14 -0.0101 10.8401 1.4082 18 1 -0.6219 10.8623 0.0553 19 1 -1.0761 10.9574 2.4355 20 1 0.9346 11.9777 1.5431 21 6 6.2893 6.3181 0.8915 22 6 6.5331 5.3970 -0.3056 23 6 6.9820 4.9690 1.0939 24 7 2.3134 3.4607 -0.5919 25 7 1.6877 2.3846 -0.9218 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.3350 1.4365 1.7271 32 1 3.5011 5.7331 -0.0754 33 1 4.4506 8.0783 0.0348 34 1 4.9183 8.5916 1.6738 35 1 2.4690 7.1927 1.8399 36 1 -0.6443 8.2515 2.3997 37 1 6.9029 7.2157 0.9691 38 1 5.6690 4.8893 -0.7341 39 1 7.3074 5.6883 -1.0153 40 1 8.0514 4.9790 1.3043 41 1 6.4133 4.1802 1.5862 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699591127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:44 Heat of formation + Delta-G solvation = 77.773906 kcal Electronic energy + Delta-G solvation = -23591.988184 eV Core-core repulsion = 20123.645682 eV Total energy + Delta-G solvation = -3468.342502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.20597 -41.02701 -38.31046 -36.53976 -36.34490 -34.76804 -33.07126 -32.31606 -31.31144 -29.65186 -26.06409 -25.52472 -24.73134 -23.43258 -22.92865 -22.70806 -21.60952 -20.82291 -19.40135 -18.84958 -17.45215 -17.27753 -17.19023 -16.85294 -16.57108 -15.72335 -15.63697 -15.37834 -15.20539 -14.97658 -14.82642 -14.35748 -13.83196 -13.58890 -13.34394 -13.12190 -13.07373 -12.85135 -12.71308 -12.64480 -12.54630 -12.29230 -12.08511 -12.02469 -11.82841 -11.34968 -11.30060 -11.03541 -10.95822 -10.77325 -10.32865 -9.92842 -9.00212 -7.93159 -5.22792 0.17998 0.64769 1.16617 1.47715 1.49997 1.58144 2.14334 2.29508 2.56685 2.98265 3.21949 3.40803 3.43476 3.66113 3.83708 3.96887 3.99833 4.03017 4.10911 4.20871 4.29129 4.34579 4.43698 4.52855 4.61516 4.68558 4.75045 4.86171 4.89567 4.93739 5.08709 5.15991 5.22760 5.28958 5.42626 5.50750 5.52422 5.57125 6.27042 6.46591 6.93130 7.17575 7.34289 8.08201 8.31841 9.30184 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.011462 B = 0.004925 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.162647 B = 5684.183673 C = 7656.647302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 N -0.348 5.348 4 C 0.109 3.891 5 C -0.128 4.128 6 C 0.605 3.395 7 O -0.560 6.560 8 N -0.693 5.693 9 C 0.177 3.823 10 H 0.071 0.929 11 C 0.149 3.851 12 N -0.744 5.744 13 C -0.243 4.243 14 H 0.080 0.920 15 C -0.075 4.075 16 N -0.970 5.970 17 Si 0.975 3.025 18 H -0.288 1.288 19 H -0.298 1.298 20 H -0.267 1.267 21 C -0.166 4.166 22 C -0.169 4.169 23 C -0.181 4.181 24 N -0.230 5.230 25 N -0.092 5.092 26 H 0.052 0.948 27 H 0.113 0.887 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.144 0.856 31 H 0.240 0.760 32 H 0.408 0.592 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.373 0.627 36 H 0.249 0.751 37 H 0.129 0.871 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.840 -19.401 -4.458 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.011 4.011 3 N -0.134 5.134 4 C -0.049 4.049 5 C -0.268 4.268 6 C 0.391 3.609 7 O -0.439 6.439 8 N -0.342 5.342 9 C 0.073 3.927 10 H 0.089 0.911 11 C 0.022 3.978 12 N -0.387 5.387 13 C -0.375 4.375 14 H 0.098 0.902 15 C -0.267 4.267 16 N -0.621 5.621 17 Si 0.804 3.196 18 H -0.215 1.215 19 H -0.225 1.225 20 H -0.191 1.191 21 C -0.185 4.185 22 C -0.206 4.206 23 C -0.218 4.218 24 N -0.103 5.103 25 N -0.072 5.072 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.069 0.931 29 H 0.136 0.864 30 H 0.162 0.838 31 H 0.256 0.744 32 H 0.243 0.757 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.205 0.795 36 H 0.058 0.942 37 H 0.146 0.854 38 H 0.097 0.903 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.440 -19.132 -5.071 21.517 hybrid contribution -0.867 0.566 0.594 1.194 sum 7.573 -18.566 -4.477 20.545 Atomic orbital electron populations 1.22094 0.93030 1.04970 1.02390 1.22586 0.96704 0.73933 1.07885 1.50979 1.30292 1.13213 1.18888 1.23854 0.92164 0.92891 0.96030 1.21572 1.08844 0.96227 1.00167 1.16925 0.79704 0.81634 0.82675 1.90687 1.47223 1.79725 1.26289 1.45786 1.47087 1.09841 1.31504 1.20606 0.88296 0.87303 0.96522 0.91081 1.21058 0.85013 0.93473 0.98221 1.42528 1.07229 1.12129 1.76767 1.19658 0.93011 0.91154 1.33681 0.90172 1.25577 0.98009 1.00725 1.02411 1.69852 1.10542 1.31004 1.50683 0.85124 0.78149 0.79635 0.76739 1.21521 1.22461 1.19120 1.22627 0.95372 0.96219 1.04313 1.22929 1.03056 1.03266 0.91343 1.23304 1.01148 0.97912 0.99439 1.74669 1.05227 1.19024 1.11413 1.81864 1.21036 0.90965 1.13332 0.92892 0.86853 0.93122 0.86408 0.83846 0.74359 0.75660 0.94702 0.93794 0.79493 0.94248 0.85359 0.90295 0.87270 0.87496 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.12 71.98 0.73 -1.10 16 2 C 0.11 0.99 7.26 86.38 0.63 1.62 16 3 N -0.35 -7.24 3.69 -347.12 -1.28 -8.52 16 4 C 0.11 2.44 11.27 83.85 0.95 3.39 16 5 C -0.13 -4.08 6.99 40.82 0.29 -3.79 16 6 C 0.60 21.36 6.65 86.69 0.58 21.94 16 7 O -0.56 -20.71 13.89 -4.01 -0.06 -20.77 16 8 N -0.69 -25.03 3.05 -445.70 -1.36 -26.38 16 9 C 0.18 6.28 2.59 44.99 0.12 6.39 16 10 H 0.07 2.82 7.58 -2.39 -0.02 2.80 16 11 C 0.15 6.00 5.80 86.38 0.50 6.50 16 12 N -0.74 -38.71 5.44 -343.44 -1.87 -40.57 16 13 C -0.24 -13.82 9.99 84.03 0.84 -12.98 16 14 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 15 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 16 N -0.97 -61.51 13.06 21.65 0.28 -61.23 16 17 Si 0.97 47.27 29.55 68.60 2.03 49.30 16 18 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 19 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 C -0.17 -4.66 5.71 -10.79 -0.06 -4.73 16 22 C -0.17 -4.36 9.74 30.62 0.30 -4.06 16 23 C -0.18 -4.80 9.82 30.62 0.30 -4.50 16 24 N -0.23 -8.09 12.04 -50.00 -0.60 -8.69 16 25 N -0.09 -2.79 13.65 37.02 0.51 -2.29 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.12 0.68 8.14 -2.39 -0.02 0.67 16 30 H 0.14 0.26 8.08 -2.39 -0.02 0.24 16 31 H 0.24 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.41 15.58 8.29 -92.71 -0.77 14.81 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.37 21.19 7.33 -92.71 -0.68 20.51 16 36 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.13 3.14 8.11 -2.39 -0.02 3.12 16 38 H 0.08 2.28 6.67 -2.39 -0.02 2.27 16 39 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.10 3.02 5.01 -2.39 -0.01 3.00 16 Total: -1.00 -76.40 347.53 2.89 -73.51 By element: Atomic # 1 Polarization: 41.30 SS G_CDS: -0.38 Total: 40.92 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.62 Total: 4.73 kcal Atomic # 7 Polarization: -143.37 SS G_CDS: -4.32 Total: -147.69 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.06 Total: -20.77 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -76.40 2.89 -73.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699591127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.280 kcal (2) G-P(sol) polarization free energy of solvation -76.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds