Wall clock time and date at job start Fri Apr 10 2020 17:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47594 * 2 1 4 4 N 1.46506 * 109.47166 * 120.00223 * 2 1 3 5 5 C 1.36930 * 119.99810 * 275.00074 * 4 2 1 6 6 H 1.08004 * 120.00268 * 359.97438 * 5 4 2 7 7 C 1.38817 * 120.00242 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99442 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00107 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47097 * 60.00152 * 9 7 5 11 11 H 1.48500 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47460 * 299.99829 * 9 7 5 13 13 C 1.53003 * 109.46940 * 239.99756 * 2 1 3 14 14 H 1.08996 * 110.88687 * 300.10514 * 13 2 1 15 15 C 1.55157 * 111.00601 * 176.18558 * 13 2 1 16 16 C 1.54320 * 102.94345 * 206.42528 * 15 13 2 17 17 N 1.47020 * 107.27215 * 22.19283 * 16 15 13 18 18 C 1.34778 * 125.64938 * 181.09890 * 17 16 15 19 19 O 1.21598 * 119.99917 * 179.97438 * 18 17 16 20 20 C 1.47525 * 120.00071 * 359.94926 * 18 17 16 21 21 C 1.36588 * 125.77127 * 180.02562 * 20 18 17 22 22 N 1.34808 * 106.84013 * 179.97438 * 21 20 18 23 23 C 1.46505 * 126.59727 * 180.02562 * 22 21 20 24 24 N 1.40219 * 106.81240 * 0.02562 * 22 21 20 25 25 N 1.28763 * 108.36008 * 359.74814 * 24 22 21 26 26 C 1.47426 * 108.70300 * 1.05608 * 17 16 15 27 27 H 1.09000 * 109.47138 * 294.92003 * 1 2 3 28 28 H 1.08994 * 109.47679 * 174.91711 * 1 2 3 29 29 H 1.09008 * 109.46951 * 54.91523 * 1 2 3 30 30 H 0.97001 * 119.99837 * 94.99455 * 4 2 1 31 31 H 0.97004 * 119.99497 * 179.97438 * 8 7 5 32 32 H 1.09008 * 110.72000 * 324.78883 * 15 13 2 33 33 H 1.09003 * 110.72348 * 88.05917 * 15 13 2 34 34 H 1.09000 * 109.88460 * 262.77206 * 16 15 13 35 35 H 1.09004 * 110.01140 * 141.67824 * 16 15 13 36 36 H 1.08000 * 126.58200 * 359.97438 * 21 20 18 37 37 H 1.09000 * 109.46839 * 90.00115 * 23 22 21 38 38 H 1.08996 * 109.47363 * 209.99910 * 23 22 21 39 39 H 1.08998 * 109.47008 * 330.00145 * 23 22 21 40 40 H 1.08999 * 110.37036 * 217.03550 * 26 17 16 41 41 H 1.09007 * 110.45494 * 94.75835 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0404 2.4242 7 6 2.6113 -0.6621 3.5093 8 7 2.9234 -1.9393 3.4504 9 14 2.7903 0.2700 5.1182 10 1 1.4683 0.8078 5.5284 11 1 3.2992 -0.6485 6.1683 12 1 3.7464 1.3917 4.9367 13 6 2.0399 -0.7213 -1.2492 14 1 1.6879 -1.7526 -1.2734 15 6 3.5879 -0.6592 -1.3344 16 6 3.8557 -0.7753 -2.8497 17 7 2.6289 -0.3561 -3.5432 18 6 2.4496 -0.3353 -4.8788 19 8 1.3877 0.0314 -5.3440 20 6 3.5418 -0.7570 -5.7764 21 6 3.4892 -0.7821 -7.1410 22 7 4.6875 -1.2263 -7.5700 23 6 5.1003 -1.4188 -8.9624 24 7 5.4631 -1.4685 -6.4272 25 7 4.7586 -1.1767 -5.3896 26 6 1.6270 0.0367 -2.5355 27 1 -0.3633 0.4330 0.9320 28 1 -0.3634 -1.0235 -0.0910 29 1 -0.3633 0.5907 -0.8410 30 1 2.2489 -1.6319 1.1526 31 1 3.2467 -2.3966 4.2424 32 1 3.9575 0.2912 -0.9491 33 1 4.0376 -1.4949 -0.7981 34 1 4.0922 -1.8079 -3.1064 35 1 4.6827 -0.1243 -3.1334 36 1 2.6487 -0.5003 -7.7580 37 1 5.5499 -0.4998 -9.3385 38 1 5.8282 -2.2282 -9.0170 39 1 4.2298 -1.6716 -9.5678 40 1 0.6300 -0.2691 -2.8525 41 1 1.6575 1.1133 -2.3677 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699933176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:46 Heat of formation + Delta-G solvation = 79.973276 kcal Electronic energy + Delta-G solvation = -23243.802148 eV Core-core repulsion = 19775.555018 eV Total energy + Delta-G solvation = -3468.247130 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.42339 -39.74562 -37.66206 -35.23661 -34.85653 -32.40205 -31.27188 -30.35399 -29.21299 -28.28086 -27.23220 -24.88999 -23.67259 -22.51269 -22.24474 -21.28367 -19.75610 -19.55267 -17.78178 -17.05243 -16.60485 -16.39515 -16.08084 -15.36384 -14.83961 -14.79563 -14.15357 -13.79487 -13.69497 -13.53443 -13.33335 -13.07606 -12.72114 -12.52517 -12.36669 -12.25335 -12.00153 -11.71333 -11.37430 -11.10589 -10.83026 -10.70646 -10.61534 -10.50315 -10.25418 -10.17665 -10.11613 -9.79529 -9.58812 -9.53938 -8.86647 -8.49623 -6.91759 -5.72530 -3.00630 0.86687 1.56556 1.74079 2.99420 3.23148 3.46902 3.51609 3.52201 3.98382 4.01857 4.42242 4.50255 4.60760 4.68385 4.79196 4.97387 4.99059 5.09286 5.25368 5.46342 5.55671 5.59469 5.71181 5.86848 5.94670 6.00973 6.06359 6.09543 6.18601 6.31241 6.35110 6.50170 6.53822 6.68997 6.71922 6.93170 7.16021 7.54433 7.69761 7.73789 8.13508 8.46158 9.57417 10.15210 10.50303 11.50124 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032408 B = 0.002991 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.772386 B = 9358.849650 C = 9985.684886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.235 4.235 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.103 4.103 14 H 0.081 0.919 15 C -0.117 4.117 16 C 0.107 3.893 17 N -0.599 5.599 18 C 0.614 3.386 19 O -0.547 6.547 20 C -0.094 4.094 21 C 0.091 3.909 22 N -0.366 5.366 23 C 0.088 3.912 24 N -0.069 5.069 25 N -0.197 5.197 26 C 0.115 3.885 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.384 0.616 31 H 0.255 0.745 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.205 0.795 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.753 1.363 -25.577 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.366 4.366 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.123 4.123 14 H 0.099 0.901 15 C -0.155 4.155 16 C -0.016 4.016 17 N -0.331 5.331 18 C 0.400 3.600 19 O -0.425 6.425 20 C -0.233 4.233 21 C -0.066 4.066 22 N -0.151 5.151 23 C -0.053 4.053 24 N -0.049 5.049 25 N -0.071 5.071 26 C -0.007 4.007 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.217 0.783 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.222 0.778 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.591 1.197 -25.274 25.556 hybrid contribution -0.651 0.394 0.349 0.837 sum 2.940 1.591 -24.925 25.148 Atomic orbital electron populations 1.22496 0.99288 1.00620 1.00400 1.20130 0.91740 0.95169 0.85455 0.93270 1.42357 1.78150 1.10670 1.05097 1.19171 1.36377 0.93793 0.87298 0.91303 1.24712 1.02334 0.95951 0.97960 1.69649 1.51011 1.08608 1.28916 0.86299 0.77729 0.78601 0.83741 1.21378 1.21797 1.21340 1.22680 0.95487 1.00186 0.93915 0.90072 1.22621 0.96057 1.04069 0.92776 1.22229 0.86110 1.00603 0.92644 1.48313 1.16689 1.63744 1.04350 1.16337 0.85141 0.78022 0.80452 1.90798 1.26437 1.49836 1.75454 1.21446 0.95129 1.14316 0.92435 1.23340 0.90522 0.97007 0.95746 1.50397 1.10459 1.44667 1.09601 1.22188 1.03253 1.04673 0.75189 1.82045 1.15586 1.21993 0.85307 1.74782 1.02568 1.08420 1.21299 1.22357 0.92053 0.99470 0.86810 0.92601 0.93585 0.94373 0.78273 0.93539 0.90337 0.89458 0.90975 0.91083 0.77836 0.89223 0.88061 0.88416 0.90335 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 9.23 37.16 0.34 -2.66 16 2 C 0.19 3.55 2.40 -67.93 -0.16 3.39 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 N -0.72 -17.44 4.88 -53.42 -0.26 -17.70 16 5 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 6 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 9 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C -0.10 -1.67 2.63 -88.47 -0.23 -1.90 16 14 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 15 C -0.12 -1.84 6.19 -24.90 -0.15 -2.00 16 16 C 0.11 1.52 5.52 -3.07 -0.02 1.50 16 17 N -0.60 -8.97 3.33 -171.75 -0.57 -9.54 16 18 C 0.61 9.25 7.85 -12.47 -0.10 9.16 16 19 O -0.55 -9.25 17.12 5.28 0.09 -9.16 16 20 C -0.09 -1.21 6.85 -83.55 -0.57 -1.78 16 21 C 0.09 0.83 11.31 -16.84 -0.19 0.64 16 22 N -0.37 -3.01 4.03 -67.86 -0.27 -3.28 16 23 C 0.09 0.23 11.51 59.85 0.69 0.92 16 24 N -0.07 -0.83 13.79 60.35 0.83 0.00 16 25 N -0.20 -2.68 9.77 32.84 0.32 -2.36 16 26 C 0.12 1.72 5.52 -2.53 -0.01 1.71 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.58 7.60 -51.92 -0.39 0.18 16 30 H 0.38 9.90 7.80 -40.82 -0.32 9.58 16 31 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.08 1.28 8.04 -51.92 -0.42 0.87 16 33 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.07 1.03 7.62 -51.93 -0.40 0.63 16 35 H 0.07 0.99 7.72 -51.93 -0.40 0.59 16 36 H 0.20 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 38 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 40 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 41 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -33.93 345.40 -5.72 -39.65 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.11 Total: 5.10 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -0.65 Total: 1.95 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.77 Total: -60.05 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.93 -5.72 -39.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699933176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.621 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds