Wall clock time and date at job start Fri Apr 10 2020 17:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47594 * 2 1 4 4 N 1.46506 * 109.47166 * 120.00223 * 2 1 3 5 5 C 1.36930 * 119.99810 * 275.00074 * 4 2 1 6 6 H 1.08004 * 120.00268 * 359.97438 * 5 4 2 7 7 C 1.38817 * 120.00242 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99442 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00107 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47097 * 60.00152 * 9 7 5 11 11 H 1.48500 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47460 * 299.99829 * 9 7 5 13 13 C 1.53003 * 109.46940 * 239.99756 * 2 1 3 14 14 H 1.08996 * 110.88687 * 300.10514 * 13 2 1 15 15 C 1.55157 * 111.00601 * 176.18558 * 13 2 1 16 16 C 1.54320 * 102.94345 * 206.42528 * 15 13 2 17 17 N 1.47020 * 107.27215 * 22.19283 * 16 15 13 18 18 C 1.34778 * 125.64938 * 181.09890 * 17 16 15 19 19 O 1.21598 * 119.99917 * 179.97438 * 18 17 16 20 20 C 1.47525 * 120.00071 * 359.94926 * 18 17 16 21 21 C 1.36588 * 125.77127 * 180.02562 * 20 18 17 22 22 N 1.34808 * 106.84013 * 179.97438 * 21 20 18 23 23 C 1.46505 * 126.59727 * 180.02562 * 22 21 20 24 24 N 1.40219 * 106.81240 * 0.02562 * 22 21 20 25 25 N 1.28763 * 108.36008 * 359.74814 * 24 22 21 26 26 C 1.47426 * 108.70300 * 1.05608 * 17 16 15 27 27 H 1.09000 * 109.47138 * 294.92003 * 1 2 3 28 28 H 1.08994 * 109.47679 * 174.91711 * 1 2 3 29 29 H 1.09008 * 109.46951 * 54.91523 * 1 2 3 30 30 H 0.97001 * 119.99837 * 94.99455 * 4 2 1 31 31 H 0.97004 * 119.99497 * 179.97438 * 8 7 5 32 32 H 1.09008 * 110.72000 * 324.78883 * 15 13 2 33 33 H 1.09003 * 110.72348 * 88.05917 * 15 13 2 34 34 H 1.09000 * 109.88460 * 262.77206 * 16 15 13 35 35 H 1.09004 * 110.01140 * 141.67824 * 16 15 13 36 36 H 1.08000 * 126.58200 * 359.97438 * 21 20 18 37 37 H 1.09000 * 109.46839 * 90.00115 * 23 22 21 38 38 H 1.08996 * 109.47363 * 209.99910 * 23 22 21 39 39 H 1.08998 * 109.47008 * 330.00145 * 23 22 21 40 40 H 1.08999 * 110.37036 * 217.03550 * 26 17 16 41 41 H 1.09007 * 110.45494 * 94.75835 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0404 2.4242 7 6 2.6113 -0.6621 3.5093 8 7 2.9234 -1.9393 3.4504 9 14 2.7903 0.2700 5.1182 10 1 1.4683 0.8078 5.5284 11 1 3.2992 -0.6485 6.1683 12 1 3.7464 1.3917 4.9367 13 6 2.0399 -0.7213 -1.2492 14 1 1.6879 -1.7526 -1.2734 15 6 3.5879 -0.6592 -1.3344 16 6 3.8557 -0.7753 -2.8497 17 7 2.6289 -0.3561 -3.5432 18 6 2.4496 -0.3353 -4.8788 19 8 1.3877 0.0314 -5.3440 20 6 3.5418 -0.7570 -5.7764 21 6 3.4892 -0.7821 -7.1410 22 7 4.6875 -1.2263 -7.5700 23 6 5.1003 -1.4188 -8.9624 24 7 5.4631 -1.4685 -6.4272 25 7 4.7586 -1.1767 -5.3896 26 6 1.6270 0.0367 -2.5355 27 1 -0.3633 0.4330 0.9320 28 1 -0.3634 -1.0235 -0.0910 29 1 -0.3633 0.5907 -0.8410 30 1 2.2489 -1.6319 1.1526 31 1 3.2467 -2.3966 4.2424 32 1 3.9575 0.2912 -0.9491 33 1 4.0376 -1.4949 -0.7981 34 1 4.0922 -1.8079 -3.1064 35 1 4.6827 -0.1243 -3.1334 36 1 2.6487 -0.5003 -7.7580 37 1 5.5499 -0.4998 -9.3385 38 1 5.8282 -2.2282 -9.0170 39 1 4.2298 -1.6716 -9.5678 40 1 0.6300 -0.2691 -2.8525 41 1 1.6575 1.1133 -2.3677 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699933176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:46 Heat of formation + Delta-G solvation = 55.965282 kcal Electronic energy + Delta-G solvation = -23244.843213 eV Core-core repulsion = 19775.555018 eV Total energy + Delta-G solvation = -3469.288195 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.22223 -40.94322 -38.97678 -36.78022 -35.59562 -34.20282 -32.33136 -31.61098 -30.78077 -29.16206 -28.33405 -26.34878 -25.26514 -23.42035 -23.20248 -22.67147 -21.07060 -20.73452 -19.15259 -18.62012 -17.56211 -17.35707 -17.12697 -16.48810 -16.34959 -15.72789 -15.57079 -15.31131 -14.85307 -14.62357 -14.17770 -14.17087 -13.95896 -13.83848 -13.73060 -13.40648 -13.19070 -13.07220 -12.86936 -12.72496 -12.31827 -12.21708 -12.15647 -11.93750 -11.61844 -11.51915 -11.35769 -11.30810 -11.25439 -10.87418 -10.39154 -9.67862 -8.94217 -7.87723 -5.14570 0.15044 0.59506 1.18912 1.50507 1.52557 1.58322 1.90081 2.17772 2.60836 3.09676 3.40820 3.45923 3.60482 3.70403 3.85794 3.89896 3.96431 4.25872 4.34903 4.36769 4.39068 4.47725 4.57262 4.65844 4.68477 4.71036 4.77346 4.85755 4.96476 5.02392 5.10806 5.17909 5.23247 5.35792 5.42270 5.46345 5.58030 5.65503 6.34119 6.39577 6.79963 7.05417 7.41101 8.17797 8.41247 9.35620 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.032408 B = 0.002991 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.772386 B = 9358.849650 C = 9985.684886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.183 3.817 3 H 0.048 0.952 4 N -0.731 5.731 5 C -0.230 4.230 6 H 0.074 0.926 7 C -0.076 4.076 8 N -0.969 5.969 9 Si 0.967 3.033 10 H -0.281 1.281 11 H -0.299 1.299 12 H -0.279 1.279 13 C -0.093 4.093 14 H 0.076 0.924 15 C -0.113 4.113 16 C 0.123 3.877 17 N -0.605 5.605 18 C 0.614 3.386 19 O -0.569 6.569 20 C -0.127 4.127 21 C 0.113 3.887 22 N -0.351 5.351 23 C 0.074 3.926 24 N -0.096 5.096 25 N -0.223 5.223 26 C 0.122 3.878 27 H 0.036 0.964 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.373 0.627 31 H 0.249 0.751 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.241 0.759 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.464 2.310 -28.034 28.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.074 3.926 3 H 0.066 0.934 4 N -0.371 5.371 5 C -0.363 4.363 6 H 0.092 0.908 7 C -0.268 4.268 8 N -0.621 5.621 9 Si 0.796 3.204 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.205 1.205 13 C -0.113 4.113 14 H 0.095 0.905 15 C -0.151 4.151 16 C 0.000 4.000 17 N -0.336 5.336 18 C 0.402 3.598 19 O -0.449 6.449 20 C -0.267 4.267 21 C -0.045 4.045 22 N -0.135 5.135 23 C -0.064 4.064 24 N -0.076 5.076 25 N -0.096 5.096 26 C 0.000 4.000 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.204 0.796 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.257 0.743 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.149 0.851 40 H 0.100 0.900 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.317 2.170 -27.784 28.066 hybrid contribution -0.567 0.120 0.906 1.075 sum 2.749 2.290 -26.879 27.116 Atomic orbital electron populations 1.22356 0.97843 1.00949 1.00747 1.20305 0.92574 0.94874 0.84828 0.93360 1.42522 1.78363 1.10272 1.05963 1.19534 1.34400 0.94063 0.88254 0.90789 1.25454 1.03384 0.96815 1.01148 1.69804 1.52905 1.10083 1.29261 0.85308 0.77809 0.77344 0.79893 1.20714 1.22540 1.20545 1.22477 0.95693 0.99736 0.93399 0.90532 1.22524 0.95653 1.03092 0.93828 1.22036 0.86083 1.00666 0.91201 1.48348 1.16610 1.63982 1.04662 1.16613 0.85436 0.77329 0.80385 1.90771 1.27426 1.50967 1.75742 1.21388 0.94825 1.16790 0.93698 1.23829 0.91283 0.94754 0.94672 1.50759 1.09627 1.42546 1.10607 1.22736 1.05199 1.06018 0.72453 1.81946 1.16405 1.23010 0.86285 1.74736 1.03076 1.09271 1.22536 1.22241 0.92248 0.99525 0.85992 0.94453 0.93806 0.91212 0.79550 0.94262 0.91002 0.90793 0.91053 0.90705 0.74334 0.87336 0.87394 0.85094 0.90006 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.53 9.23 71.98 0.66 -4.87 16 2 C 0.18 6.93 2.40 44.99 0.11 7.04 16 3 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 4 N -0.73 -35.73 4.88 -322.93 -1.58 -37.30 16 5 C -0.23 -12.55 9.93 84.04 0.83 -11.72 16 6 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 7 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 8 N -0.97 -59.10 13.06 21.65 0.28 -58.82 16 9 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 C -0.09 -3.00 2.63 -9.40 -0.02 -3.02 16 14 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 15 C -0.11 -3.58 6.19 31.78 0.20 -3.39 16 16 C 0.12 3.48 5.52 86.73 0.48 3.96 16 17 N -0.60 -17.65 3.33 -815.54 -2.71 -20.36 16 18 C 0.61 17.88 7.85 86.69 0.68 18.56 16 19 O -0.57 -18.44 17.12 -4.02 -0.07 -18.51 16 20 C -0.13 -3.12 6.85 40.82 0.28 -2.84 16 21 C 0.11 1.76 11.31 83.85 0.95 2.70 16 22 N -0.35 -4.85 4.03 -368.60 -1.49 -6.34 16 23 C 0.07 0.13 11.51 127.77 1.47 1.60 16 24 N -0.10 -2.21 13.79 37.02 0.51 -1.70 16 25 N -0.22 -5.94 9.77 -50.00 -0.49 -6.43 16 26 C 0.12 3.52 5.52 86.85 0.48 4.00 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.97 7.60 -2.38 -0.02 1.96 16 30 H 0.37 19.70 7.80 -92.71 -0.72 18.98 16 31 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 32 H 0.07 2.37 8.04 -2.38 -0.02 2.35 16 33 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.07 2.05 7.62 -2.39 -0.02 2.04 16 35 H 0.07 2.09 7.72 -2.38 -0.02 2.07 16 36 H 0.24 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.13 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.08 2.32 8.04 -2.39 -0.02 2.30 16 41 H 0.08 2.16 8.03 -2.38 -0.02 2.14 16 Total: -1.00 -74.01 345.40 3.38 -70.62 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.31 Total: 22.39 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 6.58 Total: 8.17 kcal Atomic # 7 Polarization: -125.48 SS G_CDS: -5.47 Total: -130.95 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.07 Total: -18.51 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -74.01 3.38 -70.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699933176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.588 kcal (2) G-P(sol) polarization free energy of solvation -74.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds