Wall clock time and date at job start Fri Apr 10 2020 17:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 119.99760 * 2 1 4 4 C 1.50695 * 120.00060 * 179.97438 * 2 1 3 5 5 O 1.42902 * 109.47411 * 0.02562 * 4 2 1 6 6 N 1.41595 * 114.00266 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99836 * 179.97438 * 6 5 4 8 8 O 1.21363 * 120.00428 * 359.72739 * 7 6 5 9 9 C 1.49316 * 120.00039 * 179.97438 * 7 6 5 10 10 O 1.21399 * 119.99564 * 359.72865 * 9 7 6 11 11 N 1.34777 * 120.00068 * 179.73002 * 9 7 6 12 12 C 1.40295 * 119.99771 * 180.02562 * 11 9 7 13 13 C 1.40724 * 126.09794 * 359.68055 * 12 11 9 14 14 N 1.30880 * 108.37410 * 179.88427 * 13 12 11 15 15 N 1.40067 * 108.43250 * 0.38131 * 14 13 12 16 16 C 1.37296 * 126.05353 * 179.73597 * 15 14 13 17 17 H 1.08001 * 119.99974 * 180.02562 * 16 15 14 18 18 C 1.39008 * 120.00011 * 0.02846 * 16 15 14 19 19 N 1.31284 * 119.99856 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00086 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46804 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47144 * 119.99547 * 20 18 16 23 23 H 1.48500 * 109.46629 * 239.99767 * 20 18 16 24 24 C 1.35782 * 126.09899 * 179.97438 * 12 11 9 25 25 H 1.08003 * 120.00235 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.00096 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46993 * 269.99295 * 3 2 1 28 28 H 1.09001 * 109.47310 * 30.00213 * 3 2 1 29 29 H 1.09006 * 109.46683 * 149.99651 * 3 2 1 30 30 H 1.08999 * 109.47086 * 240.00460 * 4 2 1 31 31 H 1.09001 * 109.47247 * 120.00529 * 4 2 1 32 32 H 0.97004 * 120.00146 * 0.02562 * 6 5 4 33 33 H 0.96996 * 119.99887 * 359.97438 * 11 9 7 34 34 H 1.07994 * 125.81275 * 0.04062 * 13 12 11 35 35 H 0.97000 * 119.99511 * 179.97438 * 19 18 16 36 36 H 1.08002 * 126.25235 * 359.94018 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 8 1.1349 -2.3913 0.0005 6 7 1.7439 -3.6696 0.0016 7 6 0.9800 -4.7799 0.0021 8 8 -0.2299 -4.6841 0.0066 9 6 1.6221 -6.1279 0.0027 10 8 2.8323 -6.2237 -0.0023 11 7 0.8581 -7.2383 0.0087 12 6 1.4615 -8.5048 0.0098 13 6 2.8446 -8.7643 -0.0013 14 7 3.0211 -10.0612 0.0063 15 7 1.7642 -10.6792 0.0136 16 6 1.5288 -12.0318 0.0176 17 1 0.5148 -12.4034 0.0228 18 6 2.5957 -12.9229 0.0149 19 7 3.8283 -12.4711 0.0081 20 14 2.2755 -14.7633 0.0196 21 1 0.8112 -15.0109 0.0265 22 1 2.8753 -15.3732 -1.1943 23 1 2.8852 -15.3687 1.2307 24 6 0.8151 -9.6989 0.0161 25 1 -0.5401 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 2.2452 1.6197 -1.0276 28 1 1.4744 2.0648 0.5139 29 1 3.0159 1.1748 0.5139 30 1 2.6901 -1.3624 0.8906 31 1 2.6902 -1.3632 -0.8893 32 1 2.7109 -3.7462 0.0027 33 1 -0.1088 -7.1616 0.0131 34 1 3.6271 -8.0201 -0.0115 35 1 4.5727 -13.0930 0.0067 36 1 -0.2548 -9.8459 0.0221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329675549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:08 Heat of formation + Delta-G solvation = 24.772591 kcal Electronic energy + Delta-G solvation = -22110.995101 eV Core-core repulsion = 18406.802533 eV Total energy + Delta-G solvation = -3704.192568 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.05080 -41.14207 -39.68253 -38.82677 -36.43384 -35.95845 -35.03448 -33.11648 -32.29114 -29.91591 -28.13234 -27.71601 -27.07748 -25.42266 -22.95738 -22.07577 -21.31145 -20.44401 -19.38105 -19.08360 -18.91370 -17.48361 -17.37390 -17.33888 -16.83546 -16.50019 -16.11937 -15.76683 -15.46207 -15.40524 -14.88343 -14.78398 -14.70699 -14.04119 -13.58401 -13.51554 -13.39249 -12.97516 -12.94139 -12.62831 -12.53505 -12.50524 -12.19288 -12.02682 -12.02050 -11.09279 -10.87996 -10.73949 -10.34545 -10.14121 -9.97467 -8.64345 -8.48713 -6.26284 0.17047 0.24668 1.18889 1.28553 1.42053 1.60747 1.70790 1.98329 1.99783 2.21626 2.49431 2.78545 3.08165 3.27606 3.42433 3.72962 4.17034 4.22211 4.26079 4.40155 4.51849 4.68028 4.84975 4.93811 4.98796 4.99341 5.14141 5.16879 5.28888 5.32399 5.57563 5.67697 5.85799 5.93019 6.21760 6.41173 6.66105 6.78097 6.97978 7.41142 7.62867 8.50606 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.065384 B = 0.002374 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.136180 B =11789.734356 C =12197.414041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.136 4.136 3 C -0.109 4.109 4 C 0.054 3.946 5 O -0.153 6.153 6 N -0.557 5.557 7 C 0.537 3.463 8 O -0.530 6.530 9 C 0.507 3.493 10 O -0.536 6.536 11 N -0.574 5.574 12 C -0.058 4.058 13 C -0.045 4.045 14 N -0.308 5.308 15 N -0.163 5.163 16 C -0.352 4.352 17 H 0.142 0.858 18 C -0.005 4.005 19 N -0.820 5.820 20 Si 1.019 2.981 21 H -0.242 1.242 22 H -0.272 1.272 23 H -0.272 1.272 24 C -0.071 4.071 25 H 0.120 0.880 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.433 0.567 33 H 0.426 0.574 34 H 0.179 0.821 35 H 0.278 0.722 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.096 19.491 -0.010 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.138 4.138 3 C -0.166 4.166 4 C -0.022 4.022 5 O -0.158 6.158 6 N -0.260 5.260 7 C 0.318 3.682 8 O -0.405 6.405 9 C 0.287 3.713 10 O -0.413 6.413 11 N -0.219 5.219 12 C -0.164 4.164 13 C -0.220 4.220 14 N -0.139 5.139 15 N 0.069 4.931 16 C -0.483 4.483 17 H 0.160 0.840 18 C -0.217 4.217 19 N -0.448 5.448 20 Si 0.838 3.162 21 H -0.164 1.164 22 H -0.198 1.198 23 H -0.198 1.198 24 C -0.222 4.222 25 H 0.138 0.862 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.277 0.723 33 H 0.264 0.736 34 H 0.196 0.804 35 H 0.088 0.912 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -3.227 18.540 -0.010 18.818 hybrid contribution -0.355 0.177 -0.006 0.397 sum -3.582 18.716 -0.016 19.056 Atomic orbital electron populations 1.23845 0.95880 1.02498 1.00102 1.21672 0.95662 0.94054 1.02377 1.20810 1.00463 0.91860 1.03456 1.22155 0.92634 0.83509 1.03921 1.90572 1.24611 1.03201 1.97385 1.46822 1.09441 0.95585 1.74174 1.19738 0.86738 0.83798 0.77950 1.90762 1.14251 1.86614 1.48921 1.19394 0.86719 0.84531 0.80621 1.90672 1.14124 1.86468 1.50083 1.41932 1.10709 1.01896 1.67367 1.17233 0.91844 0.83782 1.23560 1.24298 0.95550 0.94148 1.08039 1.78175 1.02700 1.05613 1.27424 1.44854 1.02882 1.05639 1.39728 1.20695 0.96809 0.77004 1.53770 0.84049 1.26874 0.93955 1.06845 0.94071 1.70375 0.99717 1.37845 1.36840 0.84531 0.80269 0.73185 0.78211 1.16437 1.19759 1.19764 1.22009 0.96343 0.86670 1.17188 0.86226 0.89665 0.90157 0.90270 0.90420 0.88821 0.88847 0.72265 0.73644 0.80409 0.91230 0.79384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.13 13.66 67.78 0.93 -2.21 16 2 C -0.14 -1.94 6.05 -16.49 -0.10 -2.04 16 3 C -0.11 -0.88 10.03 71.24 0.71 -0.17 16 4 C 0.05 0.81 6.63 71.23 0.47 1.29 16 5 O -0.15 -3.65 9.50 -21.39 -0.20 -3.85 16 6 N -0.56 -13.69 6.38 -174.60 -1.11 -14.80 16 7 C 0.54 16.34 8.03 87.23 0.70 17.04 16 8 O -0.53 -18.38 16.88 14.10 0.24 -18.14 16 9 C 0.51 17.42 7.85 87.23 0.69 18.10 16 10 O -0.54 -20.43 13.62 -3.40 -0.05 -20.48 16 11 N -0.57 -20.48 5.45 -305.33 -1.66 -22.15 16 12 C -0.06 -2.59 6.90 37.82 0.26 -2.33 16 13 C -0.04 -2.31 10.85 85.44 0.93 -1.38 16 14 N -0.31 -17.85 10.39 -56.43 -0.59 -18.44 16 15 N -0.16 -8.81 3.73 -189.98 -0.71 -9.52 16 16 C -0.35 -18.14 10.25 84.02 0.86 -17.28 16 17 H 0.14 6.33 7.83 -2.91 -0.02 6.31 16 18 C -0.01 -0.27 5.50 84.96 0.47 0.20 16 19 N -0.82 -46.01 11.81 21.66 0.26 -45.76 16 20 Si 1.02 37.66 29.55 68.60 2.03 39.68 16 21 H -0.24 -8.02 7.11 99.48 0.71 -7.31 16 22 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 23 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 24 C -0.07 -3.21 11.50 83.41 0.96 -2.25 16 25 H 0.12 1.51 8.04 -2.91 -0.02 1.48 16 26 H 0.08 1.88 6.84 -2.91 -0.02 1.86 16 27 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.08 0.53 8.06 -2.39 -0.02 0.52 16 29 H 0.08 0.47 8.12 -2.38 -0.02 0.45 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.43 8.54 8.01 -92.71 -0.74 7.80 16 33 H 0.43 12.79 8.29 -92.71 -0.77 12.02 16 34 H 0.18 8.89 5.92 -2.91 -0.02 8.87 16 35 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 36 H 0.19 6.76 8.06 -2.91 -0.02 6.74 16 Total: -1.00 -72.71 327.79 4.71 -68.01 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: -0.36 Total: 36.48 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 6.87 Total: 8.97 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -3.82 Total: -110.67 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.01 Total: -42.47 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.68 kcal Total: -72.71 4.71 -68.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329675549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.778 kcal (2) G-P(sol) polarization free energy of solvation -72.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds