Wall clock time and date at job start Fri Apr 10 2020 17:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00240 * 2 1 4 4 H 1.48494 * 109.46891 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46861 * 299.99621 * 3 2 1 6 6 H 1.48497 * 109.47070 * 59.99814 * 3 2 1 7 7 C 1.37880 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99803 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00331 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.64051 * 59.29545 * 9 7 2 11 11 C 1.55150 * 110.87664 * 182.54557 * 9 7 2 12 12 C 1.54909 * 101.58625 * 153.93766 * 11 9 7 13 13 N 1.47432 * 104.82763 * 322.99424 * 12 11 9 14 14 C 1.34776 * 125.64354 * 204.16322 * 13 12 11 15 15 O 1.21353 * 119.99899 * 179.97438 * 14 13 12 16 16 C 1.49451 * 120.00396 * 359.95597 * 14 13 12 17 17 O 1.21353 * 119.99704 * 0.02562 * 16 14 13 18 18 N 1.34775 * 120.00020 * 180.02562 * 16 14 13 19 19 C 1.46503 * 120.00040 * 180.02562 * 18 16 14 20 20 C 1.54630 * 111.03523 * 267.02375 * 19 18 16 21 21 C 1.51102 * 104.72433 * 217.33068 * 20 19 18 22 22 C 1.30529 * 111.10396 * 16.43858 * 21 20 19 23 23 C 1.51103 * 111.10251 * 359.97438 * 22 21 20 24 24 C 1.47016 * 108.70315 * 24.12669 * 13 12 11 25 25 H 0.97002 * 119.99961 * 0.02562 * 1 2 3 26 26 H 0.96700 * 114.00311 * 298.31674 * 10 9 7 27 27 H 1.08998 * 111.00710 * 272.01453 * 11 9 7 28 28 H 1.09005 * 111.00194 * 35.86276 * 11 9 7 29 29 H 1.09000 * 110.37024 * 204.15918 * 12 11 9 30 30 H 1.08995 * 110.36503 * 81.82654 * 12 11 9 31 31 H 0.96999 * 120.00460 * 359.97438 * 18 16 14 32 32 H 1.09005 * 110.91532 * 31.03193 * 19 18 16 33 33 H 1.09001 * 110.38852 * 336.14591 * 20 19 18 34 34 H 1.09007 * 110.39054 * 98.52297 * 20 19 18 35 35 H 1.08000 * 124.44583 * 196.41055 * 21 20 19 36 36 H 1.08002 * 124.44567 * 179.97438 * 22 21 20 37 37 H 1.09004 * 110.38315 * 224.75276 * 23 22 21 38 38 H 1.09000 * 110.48187 * 102.42255 * 23 22 21 39 39 H 1.09001 * 109.88215 * 239.51992 * 24 13 12 40 40 H 1.09006 * 109.88177 * 118.36311 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.4082 -2.5942 -1.1496 11 6 2.2287 -3.7021 0.0656 12 6 1.3417 -4.7888 0.7229 13 7 0.5222 -4.0612 1.7091 14 6 -0.0445 -4.5975 2.8081 15 8 -0.7011 -3.9008 3.5537 16 6 0.1355 -6.0505 3.1083 17 8 0.7923 -6.7472 2.3627 18 7 -0.4316 -6.5869 4.2069 19 6 -0.2547 -8.0111 4.5015 20 6 -1.4150 -8.8476 3.9142 21 6 -1.6714 -9.9242 4.9430 22 6 -1.1247 -9.6194 6.0885 23 6 -0.4121 -8.2890 6.0143 24 6 0.4263 -2.6536 1.2958 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2722 -1.9087 -1.1964 27 1 2.5421 -4.0053 -0.9334 28 1 3.0912 -3.4711 0.6907 29 1 1.9615 -5.5343 1.2209 30 1 0.7047 -5.2616 -0.0246 31 1 -0.9563 -6.0299 4.8031 32 1 0.7088 -8.3671 4.1368 33 1 -2.3021 -8.2277 3.7840 34 1 -1.1192 -9.2930 2.9643 35 1 -2.2336 -10.8270 4.7554 36 1 -1.1752 -10.2370 6.9730 37 1 0.5652 -8.3547 6.4925 38 1 -1.0117 -7.5085 6.4828 39 1 0.8353 -2.0098 2.0745 40 1 -0.6150 -2.3931 1.1057 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329780871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:11 Heat of formation + Delta-G solvation = -92.133880 kcal Electronic energy + Delta-G solvation = -23849.230364 eV Core-core repulsion = 20243.508694 eV Total energy + Delta-G solvation = -3605.721669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55140 -39.15904 -37.92330 -37.21772 -34.57171 -33.69814 -32.22745 -30.16540 -28.56773 -28.45404 -27.88824 -25.79172 -23.83376 -22.14694 -20.85180 -19.96609 -19.50323 -18.96285 -17.33109 -17.19304 -16.85626 -16.27037 -15.79316 -15.55555 -15.17980 -14.55741 -14.29043 -14.02096 -13.34272 -13.04400 -13.02408 -12.94123 -12.86989 -12.45897 -12.35842 -12.14309 -11.74751 -11.69203 -11.53488 -11.48890 -11.10780 -11.05849 -10.77763 -10.59627 -10.47434 -10.17776 -9.37432 -9.30130 -9.22091 -9.10127 -8.68542 -8.34710 -8.03628 -6.31728 -4.39755 1.74044 1.94505 2.59066 3.19022 3.27898 3.31636 3.54888 3.84620 4.24955 4.27367 4.39249 4.66829 4.85711 4.96399 4.96921 5.14152 5.39225 5.43704 5.49699 5.60182 5.68811 5.74613 5.81650 5.87960 6.04051 6.19453 6.20612 6.38188 6.50353 6.54197 6.74395 6.78966 6.82227 7.15617 7.20283 7.32085 7.70572 7.84917 8.00274 8.01589 8.40687 8.64283 9.28035 9.37754 10.76395 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.036108 B = 0.003295 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.259620 B = 8496.162532 C = 8772.964256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.121 4.121 12 C 0.099 3.901 13 N -0.574 5.574 14 C 0.506 3.494 15 O -0.539 6.539 16 C 0.513 3.487 17 O -0.515 6.515 18 N -0.700 5.700 19 C 0.139 3.861 20 C -0.117 4.117 21 C -0.158 4.158 22 C -0.168 4.168 23 C -0.108 4.108 24 C 0.099 3.901 25 H 0.270 0.730 26 H 0.383 0.617 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.412 0.588 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 -15.451 9.380 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.573 4.573 8 H 0.087 0.913 9 C 0.207 3.793 10 O -0.392 6.392 11 C -0.159 4.159 12 C -0.024 4.024 13 N -0.306 5.306 14 C 0.288 3.712 15 O -0.418 6.418 16 C 0.295 3.705 17 O -0.390 6.390 18 N -0.353 5.353 19 C 0.034 3.966 20 C -0.155 4.155 21 C -0.176 4.176 22 C -0.186 4.186 23 C -0.145 4.145 24 C -0.022 4.022 25 H 0.080 0.920 26 H 0.234 0.766 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.249 0.751 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.473 -15.975 9.140 18.464 hybrid contribution -0.381 1.616 0.502 1.735 sum -1.854 -14.359 9.643 17.396 Atomic orbital electron populations 1.69650 1.06030 1.27889 1.49911 1.25086 0.95070 0.99840 0.93342 0.86325 0.80078 0.82623 0.77754 1.19556 1.20719 1.20782 1.21550 0.93781 0.89974 1.52040 0.91347 1.19521 0.86254 0.92331 0.81180 1.86119 1.49799 1.57199 1.46111 1.22822 0.97573 0.94962 1.00523 1.22649 0.93621 0.95221 0.90867 1.48703 1.47473 1.12965 1.21504 1.19561 0.81930 0.87535 0.82214 1.90726 1.40695 1.62148 1.48205 1.20445 0.79607 0.88969 0.81490 1.90699 1.38500 1.62502 1.47335 1.45746 1.53369 1.10115 1.26107 1.21862 0.99955 0.79957 0.94851 1.21836 0.98757 0.96040 0.98880 1.23251 1.00092 0.98901 0.95357 1.23151 0.99905 0.97054 0.98476 1.21621 1.01272 0.96369 0.95255 1.23269 1.02219 0.77063 0.99680 0.91996 0.76595 0.90284 0.90479 0.89491 0.91346 0.75116 0.87644 0.89936 0.90292 0.85593 0.85480 0.90177 0.89822 0.90920 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.50 10.98 55.43 0.61 -22.90 16 2 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 3 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.54 -13.87 8.12 -34.44 -0.28 -14.15 16 8 H 0.07 1.75 7.78 -52.49 -0.41 1.34 16 9 C 0.25 5.98 0.85 -89.95 -0.08 5.90 16 10 O -0.58 -14.66 13.07 -35.23 -0.46 -15.12 16 11 C -0.12 -2.47 6.23 -24.59 -0.15 -2.63 16 12 C 0.10 1.90 6.06 -2.52 -0.02 1.89 16 13 N -0.57 -12.08 3.33 -171.03 -0.57 -12.65 16 14 C 0.51 9.98 7.91 -11.59 -0.09 9.89 16 15 O -0.54 -11.58 16.81 5.49 0.09 -11.49 16 16 C 0.51 8.44 7.86 -11.59 -0.09 8.35 16 17 O -0.52 -9.07 13.42 5.49 0.07 -8.99 16 18 N -0.70 -8.87 5.15 -52.58 -0.27 -9.14 16 19 C 0.14 1.45 3.53 -66.22 -0.23 1.22 16 20 C -0.12 -1.14 6.55 -26.83 -0.18 -1.32 16 21 C -0.16 -1.26 10.78 -35.70 -0.38 -1.65 16 22 C -0.17 -1.25 10.78 -35.70 -0.38 -1.63 16 23 C -0.11 -0.87 6.54 -26.84 -0.18 -1.04 16 24 C 0.10 2.35 5.37 -3.07 -0.02 2.34 16 25 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 26 H 0.38 9.81 7.26 45.56 0.33 10.14 16 27 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 28 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 29 H 0.09 1.57 6.16 -51.93 -0.32 1.25 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.41 4.81 7.90 -40.82 -0.32 4.49 16 32 H 0.11 1.21 7.54 -51.93 -0.39 0.82 16 33 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.63 7.80 -51.93 -0.41 0.23 16 39 H 0.07 1.86 7.82 -51.93 -0.41 1.45 16 40 H 0.07 1.82 7.98 -51.93 -0.41 1.40 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -28.71 332.80 -7.55 -36.26 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -4.85 Total: 14.90 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -2.17 Total: 8.87 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.23 Total: -44.69 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.29 Total: -35.60 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.71 -7.55 -36.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329780871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.870 kcal (2) G-P(sol) polarization free energy of solvation -28.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds