Wall clock time and date at job start Fri Apr 10 2020 17:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00130 * 2 1 4 4 H 1.48501 * 109.47124 * 90.00326 * 3 2 1 5 5 H 1.48509 * 109.46919 * 209.99974 * 3 2 1 6 6 H 1.48503 * 109.47384 * 329.99772 * 3 2 1 7 7 C 1.40054 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99966 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99975 * 354.97653 * 9 7 2 11 11 N 1.34777 * 120.00043 * 174.98237 * 9 7 2 12 12 C 1.46966 * 120.59305 * 4.93605 * 11 9 7 13 13 C 1.53814 * 108.39849 * 124.75935 * 12 11 9 14 14 N 1.46966 * 108.57810 * 49.63797 * 13 12 11 15 15 C 1.34774 * 120.59674 * 124.62713 * 14 13 12 16 16 O 1.21280 * 120.00320 * 180.02562 * 15 14 13 17 17 C 1.50701 * 119.99675 * 0.02562 * 15 14 13 18 18 N 1.46494 * 109.47214 * 180.02562 * 17 15 14 19 19 C 1.34605 * 126.43966 * 124.71168 * 18 17 15 20 20 N 1.31068 * 106.67902 * 179.87853 * 19 18 17 21 21 N 1.28839 * 107.99201 * 0.38622 * 20 19 18 22 22 N 1.28738 * 109.39800 * 359.75387 * 21 20 19 23 23 C 1.46968 * 118.81084 * 304.64938 * 14 13 12 24 24 C 1.46966 * 120.59464 * 185.21833 * 11 9 7 25 25 H 0.97000 * 119.99587 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.61294 * 244.54438 * 12 11 9 27 27 H 1.09002 * 109.60786 * 5.05936 * 12 11 9 28 28 H 1.09007 * 109.74220 * 289.85406 * 13 12 11 29 29 H 1.08995 * 109.67785 * 169.38601 * 13 12 11 30 30 H 1.09004 * 109.47093 * 300.00356 * 17 15 14 31 31 H 1.09006 * 109.47230 * 60.00331 * 17 15 14 32 32 H 1.08002 * 126.65708 * 0.02562 * 19 18 17 33 33 H 1.09002 * 109.60813 * 295.47678 * 23 14 13 34 34 H 1.08999 * 109.60718 * 174.97107 * 23 14 13 35 35 H 1.08998 * 109.61138 * 354.95013 * 24 11 9 36 36 H 1.09007 * 109.60611 * 115.45945 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0463 1.4001 5 1 3.5384 1.4400 -0.7001 6 1 1.4383 2.6527 -0.7001 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0616 -2.4824 0.0924 11 7 1.9450 -3.6455 -0.1010 12 6 3.4145 -3.6655 -0.1038 13 6 3.8894 -4.6047 1.0180 14 7 3.1635 -5.8773 0.9018 15 6 3.8334 -7.0422 0.7993 16 8 3.2235 -8.0862 0.7035 17 6 5.3404 -7.0477 0.8038 18 7 5.8242 -8.4250 0.6810 19 6 6.6731 -8.8940 -0.2523 20 7 6.8431 -10.1688 0.0004 21 7 6.1292 -10.4691 1.0300 22 7 5.5121 -9.4177 1.4438 23 6 1.6940 -5.8568 0.8988 24 6 1.2191 -4.9182 -0.2172 25 1 -0.4849 0.8401 -0.0004 26 1 3.7736 -4.0299 -1.0662 27 1 3.7943 -2.6594 0.0741 28 1 3.6829 -4.1531 1.9884 29 1 4.9599 -4.7837 0.9181 30 1 5.7084 -6.4575 -0.0355 31 1 5.7026 -6.6169 1.7373 32 1 7.1280 -8.3289 -1.0525 33 1 1.3313 -5.4944 1.8607 34 1 1.3145 -6.8623 0.7173 35 1 0.1488 -4.7395 -0.1144 36 1 1.4256 -5.3697 -1.1876 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338268067.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:20 Heat of formation + Delta-G solvation = 76.153108 kcal Electronic energy + Delta-G solvation = -23439.035735 eV Core-core repulsion = 19769.363945 eV Total energy + Delta-G solvation = -3669.671790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.123 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.34411 -40.38653 -38.24759 -36.18235 -35.62362 -33.36137 -32.65574 -32.60887 -31.50543 -29.45153 -27.52875 -26.12373 -24.02882 -23.94387 -23.29520 -22.22163 -20.32601 -18.88641 -18.18612 -17.80576 -16.92581 -16.36396 -16.21181 -15.95386 -15.66608 -15.48586 -14.71324 -14.40382 -14.28936 -13.99251 -13.92767 -13.20766 -12.83236 -12.73868 -12.33012 -12.19710 -11.81921 -11.61213 -11.40705 -11.34869 -11.32183 -11.22791 -11.11740 -10.93566 -10.58113 -10.39872 -10.27034 -10.01803 -9.09469 -8.94216 -7.81078 -7.47286 -6.38243 -4.85476 1.03464 1.57815 2.10660 2.18972 2.68768 3.00833 3.08097 3.10980 3.74523 3.91028 3.97355 3.99319 4.23848 4.33699 4.36869 4.55966 4.87976 5.02027 5.19810 5.25490 5.36721 5.39724 5.46792 5.65301 5.72398 5.78421 5.84944 6.05817 6.12782 6.31524 6.43102 7.11339 7.25543 7.30981 7.78127 7.87556 8.09458 8.43778 8.82856 9.17581 10.36491 10.55240 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.034530 B = 0.003293 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.689621 B = 8500.233527 C = 9093.256851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.558 3.442 10 O -0.573 6.573 11 N -0.644 5.644 12 C 0.109 3.891 13 C 0.083 3.917 14 N -0.596 5.596 15 C 0.501 3.499 16 O -0.520 6.520 17 C 0.095 3.905 18 N -0.299 5.299 19 C 0.160 3.840 20 N -0.309 5.309 21 N -0.081 5.081 22 N -0.062 5.062 23 C 0.101 3.899 24 C 0.107 3.893 25 H 0.271 0.729 26 H 0.049 0.951 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.136 0.864 32 H 0.235 0.765 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.943 -6.212 -0.035 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.188 1.188 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.364 3.636 10 O -0.455 6.455 11 N -0.383 5.383 12 C -0.017 4.017 13 C -0.040 4.040 14 N -0.330 5.330 15 C 0.285 3.715 16 O -0.395 6.395 17 C -0.030 4.030 18 N -0.101 5.101 19 C -0.139 4.139 20 N -0.156 5.156 21 N -0.076 5.076 22 N -0.049 5.049 23 C -0.022 4.022 24 C -0.018 4.018 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.127 0.873 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.162 0.838 31 H 0.154 0.846 32 H 0.252 0.748 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.509 -7.849 0.680 14.783 hybrid contribution 0.665 1.945 -0.542 2.126 sum 13.174 -5.905 0.138 14.438 Atomic orbital electron populations 1.69996 1.07138 1.27624 1.34511 1.25738 0.94645 1.00418 0.92521 0.86367 0.80123 0.81342 0.78934 1.19641 1.18835 1.20385 1.20918 0.93453 0.89113 1.54698 0.90856 1.18317 0.86993 0.82071 0.76198 1.90614 1.14349 1.85770 1.54747 1.48231 1.04250 1.05942 1.79838 1.21891 0.83672 1.00551 0.95575 1.22550 0.95275 0.84158 1.02046 1.48044 1.07997 1.05675 1.71274 1.20050 0.88559 0.84475 0.78412 1.90827 1.68759 1.30912 1.49004 1.22117 0.95316 0.77338 1.08267 1.48207 1.30781 1.10668 1.20436 1.27742 0.95787 0.92971 0.97412 1.74977 1.19394 1.10287 1.10947 1.78669 1.05445 1.17330 1.06109 1.79024 1.17737 0.91298 1.16802 1.22189 0.77591 1.01672 1.00747 1.21524 0.99528 0.85000 0.95711 0.91851 0.93278 0.87256 0.89882 0.90013 0.83815 0.84630 0.74840 0.90697 0.88747 0.88273 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.39 11.84 55.55 0.66 -20.73 16 2 C 0.09 2.22 5.50 -17.36 -0.10 2.13 16 3 Si 0.91 18.22 29.56 -169.99 -5.02 13.19 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.55 -13.59 8.87 -35.63 -0.32 -13.91 16 8 H 0.07 1.59 5.66 -52.49 -0.30 1.30 16 9 C 0.56 14.22 7.62 -12.99 -0.10 14.13 16 10 O -0.57 -17.15 14.45 5.20 0.08 -17.08 16 11 N -0.64 -12.47 2.94 -173.88 -0.51 -12.99 16 12 C 0.11 1.50 6.51 -3.36 -0.02 1.47 16 13 C 0.08 0.83 6.52 -3.36 -0.02 0.80 16 14 N -0.60 -7.14 2.95 -172.21 -0.51 -7.64 16 15 C 0.50 5.88 7.72 -10.99 -0.08 5.79 16 16 O -0.52 -8.54 15.10 5.56 0.08 -8.45 16 17 C 0.10 0.64 5.31 -5.20 -0.03 0.61 16 18 N -0.30 -3.02 3.19 -63.74 -0.20 -3.22 16 19 C 0.16 1.36 12.79 -90.39 -1.16 0.20 16 20 N -0.31 -3.97 12.36 29.59 0.37 -3.60 16 21 N -0.08 -1.24 13.43 60.35 0.81 -0.43 16 22 N -0.06 -0.89 12.29 60.35 0.74 -0.15 16 23 C 0.10 1.46 6.59 -3.60 -0.02 1.44 16 24 C 0.11 1.86 6.60 -3.60 -0.02 1.83 16 25 H 0.27 6.89 8.29 -40.82 -0.34 6.55 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.11 1.56 5.34 -51.93 -0.28 1.29 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.08 0.40 5.91 -51.93 -0.31 0.09 16 30 H 0.14 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.14 0.56 7.91 -51.93 -0.41 0.15 16 32 H 0.24 0.58 8.06 -52.49 -0.42 0.16 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 1.39 6.99 -51.93 -0.36 1.02 16 35 H 0.10 1.96 6.99 -51.93 -0.36 1.59 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 308.82 15.07 4.65 4.65 Total: -1.00 -38.54 308.82 -4.39 -42.93 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -3.66 Total: -0.98 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: -1.87 Total: 14.50 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 1.35 Total: -48.77 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: 0.16 Total: -25.53 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.19 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -38.54 -4.39 -42.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338268067.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.084 kcal (2) G-P(sol) polarization free energy of solvation -38.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds