Wall clock time and date at job start Fri Apr 10 2020 17:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34751 * 117.00469 * 2 1 4 4 O 1.21516 * 119.99531 * 359.97438 * 3 2 1 5 5 C 1.47378 * 120.00098 * 180.02562 * 3 2 1 6 6 C 1.36668 * 125.78078 * 179.97438 * 5 3 2 7 7 N 1.34781 * 106.83864 * 180.02562 * 6 5 3 8 8 C 1.46498 * 126.58576 * 180.02562 * 7 6 5 9 9 H 1.09003 * 110.88427 * 208.88171 * 8 7 6 10 10 C 1.55153 * 111.00625 * 85.00012 * 8 7 6 11 11 C 1.54323 * 103.10236 * 206.29678 * 10 8 7 12 12 N 1.47486 * 107.03754 * 22.24109 * 11 10 8 13 13 C 1.34778 * 125.59520 * 181.08732 * 12 11 10 14 14 O 1.21687 * 120.00048 * 179.97438 * 13 12 11 15 15 C 1.46376 * 119.99760 * 359.92901 * 13 12 11 16 16 H 1.07996 * 120.00006 * 0.02562 * 15 13 12 17 17 C 1.40046 * 119.99634 * 179.97438 * 15 13 12 18 18 N 1.30674 * 120.00419 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99911 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47107 * 60.00328 * 19 17 15 21 21 H 1.48498 * 109.47407 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46931 * 300.00477 * 19 17 15 23 23 C 1.47428 * 108.75727 * 1.02624 * 12 11 10 24 24 N 1.40201 * 106.82741 * 0.26350 * 7 6 5 25 25 N 1.28765 * 108.38411 * 359.55137 * 24 7 6 26 26 H 1.09006 * 109.46591 * 60.00128 * 1 2 3 27 27 H 1.09002 * 109.47310 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46964 * 300.00859 * 1 2 3 29 29 H 1.08010 * 126.57861 * 0.02562 * 6 5 3 30 30 H 1.09002 * 110.72030 * 324.74944 * 10 8 7 31 31 H 1.09003 * 110.72184 * 87.84595 * 10 8 7 32 32 H 1.09000 * 109.88693 * 141.69901 * 11 10 8 33 33 H 1.09005 * 109.88012 * 262.86516 * 11 10 8 34 34 H 0.96993 * 120.00230 * 179.97438 * 18 17 15 35 35 H 1.09000 * 110.36462 * 217.05803 * 23 12 11 36 36 H 1.08998 * 110.36847 * 94.73011 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2006 0.0000 4 8 1.4021 2.2197 -0.0005 5 6 3.5356 1.2776 -0.0006 6 6 4.2757 2.4266 -0.0011 7 7 5.5716 2.0563 -0.0021 8 6 6.7344 2.9475 -0.0024 9 1 7.5849 2.4763 -0.4951 10 6 7.0999 3.3854 1.4404 11 6 7.8025 4.7427 1.2267 12 7 7.3521 5.2616 -0.0784 13 6 7.7528 6.4178 -0.6435 14 8 7.3140 6.7484 -1.7293 15 6 8.7149 7.2762 0.0494 16 1 9.1040 6.9829 1.0132 17 6 9.1315 8.4773 -0.5380 18 7 8.6611 8.8319 -1.7044 19 14 10.3588 9.5732 0.3465 20 1 11.6221 8.8244 0.5667 21 1 10.6335 10.7762 -0.4797 22 1 9.7960 9.9904 1.6559 23 6 6.3931 4.3066 -0.6629 24 7 5.5932 0.6545 -0.0083 25 7 4.3777 0.2296 -0.0012 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 3.8950 3.4374 -0.0008 30 1 6.2016 3.5072 2.0457 31 1 7.7791 2.6679 1.9008 32 1 7.5216 5.4347 2.0206 33 1 8.8836 4.6033 1.2188 34 1 8.9494 9.6639 -2.1111 35 1 6.5270 4.2477 -1.7431 36 1 5.3713 4.5996 -0.4219 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342917256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:27 Heat of formation + Delta-G solvation = -12.051627 kcal Electronic energy + Delta-G solvation = -22862.228993 eV Core-core repulsion = 19156.439607 eV Total energy + Delta-G solvation = -3705.789386 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.44749 -40.27688 -38.85655 -36.62193 -36.26186 -33.79338 -32.66183 -31.39465 -30.15395 -28.79963 -27.99644 -26.37320 -24.45770 -23.55846 -22.41234 -21.10884 -20.84019 -19.39515 -18.44362 -17.25749 -17.12015 -16.69708 -16.37784 -15.72761 -15.57012 -15.20210 -14.61541 -14.23288 -14.08211 -13.69784 -13.54792 -13.39217 -13.27846 -12.59907 -12.23575 -12.18745 -12.02796 -11.75664 -11.59508 -11.34941 -11.26089 -11.04192 -11.00657 -10.89966 -10.88549 -10.55531 -10.42034 -10.27867 -9.51602 -9.00174 -7.89594 -7.56771 -6.37280 -4.83756 0.89663 1.36860 1.74498 2.48257 2.84874 3.05962 3.11636 3.13279 3.89363 4.02040 4.09358 4.27970 4.35660 4.42278 4.55714 4.70204 4.76148 4.88548 4.96866 5.06037 5.19925 5.25352 5.35602 5.48710 5.57015 5.65900 5.86449 5.92003 6.07755 6.13620 6.27545 6.28081 6.97805 7.27415 7.43605 7.83143 7.84692 8.15468 8.84266 9.18399 10.35509 10.55568 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.032424 B = 0.003035 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.337440 B = 9224.644002 C = 9660.738501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.341 6.341 3 C 0.560 3.440 4 O -0.504 6.504 5 C -0.099 4.099 6 C 0.112 3.888 7 N -0.338 5.338 8 C 0.128 3.872 9 H 0.131 0.869 10 C -0.139 4.139 11 C 0.122 3.878 12 N -0.642 5.642 13 C 0.570 3.430 14 O -0.571 6.571 15 C -0.536 4.536 16 H 0.071 0.929 17 C 0.086 3.914 18 N -0.765 5.765 19 Si 0.912 3.088 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.267 1.267 23 C 0.110 3.890 24 N -0.058 5.058 25 N -0.187 5.187 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.209 0.791 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.272 0.728 35 H 0.083 0.917 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.274 -13.337 6.499 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.256 6.256 3 C 0.402 3.598 4 O -0.391 6.391 5 C -0.236 4.236 6 C -0.046 4.046 7 N -0.120 5.120 8 C 0.025 3.975 9 H 0.148 0.852 10 C -0.178 4.178 11 C -0.003 4.003 12 N -0.384 5.384 13 C 0.378 3.622 14 O -0.452 6.452 15 C -0.572 4.572 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.393 5.393 19 Si 0.736 3.264 20 H -0.191 1.191 21 H -0.204 1.204 22 H -0.191 1.191 23 C -0.016 4.016 24 N -0.039 5.039 25 N -0.061 5.061 26 H 0.083 0.917 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.226 0.774 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.800 -13.840 5.676 16.870 hybrid contribution -0.117 1.459 0.515 1.552 sum -7.917 -12.381 6.191 15.947 Atomic orbital electron populations 1.23337 0.75777 1.03915 1.02744 1.86638 1.23432 1.31685 1.83893 1.19410 0.86145 0.81790 0.72418 1.90900 1.65660 1.35931 1.46568 1.20123 0.92433 0.89767 1.21310 1.23380 0.83966 1.01466 0.95811 1.50583 1.06252 1.07752 1.47450 1.23122 0.85161 0.89336 0.99851 0.85158 1.23145 1.02165 0.98447 0.94044 1.21719 0.98699 0.91758 0.88083 1.48913 1.47208 1.22489 1.19835 1.18135 0.81730 0.77335 0.84994 1.90641 1.60195 1.71902 1.22479 1.20809 1.25877 1.04708 1.05836 0.91039 1.25747 0.95766 0.97590 0.94334 1.69989 1.35346 1.20370 1.13577 0.86364 0.80874 0.79290 0.79897 1.19128 1.20423 1.19142 1.22053 0.94803 0.85354 0.99404 1.82081 1.13334 0.86276 1.22162 1.74757 0.96707 1.25731 1.08951 0.91650 0.87825 0.91695 0.77444 0.90242 0.89185 0.91537 0.91544 0.91721 0.89891 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.34 -4.06 10.57 -40.63 -0.43 -4.49 16 3 C 0.56 7.47 7.96 34.45 0.27 7.74 16 4 O -0.50 -7.38 16.65 -19.28 -0.32 -7.70 16 5 C -0.10 -1.35 7.02 -83.57 -0.59 -1.94 16 6 C 0.11 1.40 10.38 -16.82 -0.17 1.22 16 7 N -0.34 -4.37 3.69 -52.47 -0.19 -4.57 16 8 C 0.13 1.62 4.22 -65.78 -0.28 1.34 16 9 H 0.13 1.58 8.14 -51.93 -0.42 1.15 16 10 C -0.14 -1.61 6.63 -24.90 -0.17 -1.77 16 11 C 0.12 1.86 6.08 -2.81 -0.02 1.84 16 12 N -0.64 -12.95 3.34 -171.80 -0.57 -13.53 16 13 C 0.57 15.15 7.78 -12.99 -0.10 15.05 16 14 O -0.57 -17.56 15.28 5.20 0.08 -17.48 16 15 C -0.54 -14.09 9.06 -35.63 -0.32 -14.41 16 16 H 0.07 1.70 7.15 -52.49 -0.38 1.32 16 17 C 0.09 2.27 5.50 -17.37 -0.10 2.18 16 18 N -0.76 -21.88 11.83 55.55 0.66 -21.22 16 19 Si 0.91 19.03 29.56 -169.99 -5.02 14.00 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 23 C 0.11 1.80 6.28 -2.52 -0.02 1.78 16 24 N -0.06 -0.84 13.78 60.35 0.83 -0.01 16 25 N -0.19 -2.76 12.39 32.83 0.41 -2.35 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.21 2.20 6.85 -52.48 -0.36 1.84 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 35 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 36 H 0.06 0.88 6.30 -51.93 -0.33 0.55 16 LS Contribution 321.67 15.07 4.85 4.85 Total: -1.00 -34.39 321.67 -4.13 -38.52 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.00 Total: -0.41 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: -0.42 Total: 14.38 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 1.13 Total: -41.67 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.67 Total: -29.67 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.39 -4.13 -38.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342917256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.463 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds