Wall clock time and date at job start Fri Apr 10 2020 17:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35771 * 116.99675 * 2 1 4 4 N 1.32148 * 120.19149 * 0.26536 * 3 2 1 5 5 N 1.28313 * 122.18112 * 180.27582 * 4 3 2 6 6 C 1.31895 * 122.44128 * 359.71677 * 5 4 3 7 7 C 1.38531 * 120.03825 * 0.02562 * 6 5 4 8 8 C 1.39322 * 117.93779 * 359.97438 * 7 6 5 9 9 N 1.39769 * 121.11398 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99493 * 33.13413 * 9 8 7 11 11 O 1.21584 * 120.00222 * 356.17025 * 10 9 8 12 12 N 1.34778 * 119.99885 * 176.16260 * 10 9 8 13 13 C 1.47070 * 136.05696 * 359.63150 * 12 10 9 14 14 C 1.53491 * 87.98508 * 207.37506 * 13 12 10 15 15 O 1.42904 * 114.20764 * 87.52091 * 14 13 12 16 16 C 1.50700 * 114.38613 * 220.33032 * 14 13 12 17 17 H 1.08005 * 119.99754 * 93.68768 * 16 14 13 18 18 C 1.37875 * 120.00523 * 273.68569 * 16 14 13 19 19 N 1.31515 * 119.99572 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00505 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46568 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47161 * 120.00029 * 20 18 16 23 23 H 1.48503 * 109.46965 * 240.00248 * 20 18 16 24 24 C 1.47068 * 136.06085 * 179.97438 * 12 10 9 25 25 H 1.09007 * 109.47211 * 60.00149 * 1 2 3 26 26 H 1.09000 * 109.47376 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47476 * 299.99670 * 1 2 3 28 28 H 1.07998 * 119.97591 * 179.97438 * 6 5 4 29 29 H 1.07998 * 121.03026 * 180.02562 * 7 6 5 30 30 H 0.97000 * 120.00560 * 213.13179 * 9 8 7 31 31 H 1.09001 * 113.47019 * 322.15407 * 13 12 10 32 32 H 1.09000 * 113.46494 * 92.59537 * 13 12 10 33 33 H 0.96698 * 113.99631 * 86.40228 * 15 14 13 34 34 H 0.96998 * 120.00131 * 179.97438 * 19 18 16 35 35 H 1.09001 * 113.46575 * 267.40831 * 24 12 10 36 36 H 1.09001 * 113.46483 * 37.84029 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 7 1.3292 2.3204 0.0053 5 7 1.8716 3.4832 0.0003 6 6 3.1794 3.6539 -0.0050 7 6 4.0223 2.5545 -0.0058 8 6 3.4425 1.2876 -0.0003 9 7 4.2301 0.1330 -0.0013 10 6 5.4202 0.1285 0.6314 11 8 5.8404 1.1482 1.1432 12 7 6.1443 -1.0063 0.6968 13 6 5.9864 -2.3917 0.2293 14 6 6.8801 -2.8305 1.3975 15 8 6.1737 -3.0790 2.6146 16 6 7.8695 -3.9133 1.0513 17 1 8.8722 -3.6515 0.7474 18 6 7.4946 -5.2382 1.1227 19 7 6.2734 -5.5570 1.4923 20 14 8.7207 -6.5804 0.6930 21 1 10.0160 -5.9633 0.3101 22 1 8.9221 -7.4625 1.8705 23 1 8.1989 -7.3823 -0.4428 24 6 7.4374 -1.4056 1.2724 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 3.5934 4.6514 -0.0095 29 1 5.0954 2.6757 -0.0097 30 1 3.9203 -0.6652 -0.4573 31 1 4.9634 -2.7608 0.3030 32 1 6.4310 -2.5729 -0.7493 33 1 5.8241 -3.9774 2.6900 34 1 6.0094 -6.4891 1.5422 35 1 8.2682 -1.3244 0.5714 36 1 7.6485 -0.9360 2.2331 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347380511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:41 Heat of formation + Delta-G solvation = -2.501944 kcal Electronic energy + Delta-G solvation = -23476.166058 eV Core-core repulsion = 19770.790778 eV Total energy + Delta-G solvation = -3705.375281 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.45451 -39.97733 -38.47565 -38.13887 -35.14880 -34.16870 -32.28804 -32.21195 -31.06811 -28.54483 -27.68414 -25.64328 -25.26242 -24.01874 -23.77644 -20.82752 -19.41706 -18.61628 -18.38279 -17.65847 -17.35041 -16.76847 -16.31271 -15.48812 -15.26439 -15.13991 -14.59431 -14.47900 -14.24212 -14.18740 -13.79467 -13.43879 -12.89375 -12.79629 -12.17374 -12.14485 -11.73345 -11.65399 -11.43833 -11.16807 -11.10665 -10.95202 -10.55459 -10.38108 -10.31792 -9.78094 -9.55833 -9.34883 -8.88148 -8.62883 -8.44110 -7.95575 -6.49420 -4.60207 0.75296 0.96810 2.56355 2.76096 3.07863 3.18122 3.21360 3.29075 3.64184 3.98313 4.08831 4.12737 4.37383 4.73602 4.84910 4.94010 5.15454 5.17426 5.41740 5.43696 5.47608 5.61255 5.76026 5.97493 6.11291 6.21170 6.28977 6.39118 6.41601 6.53647 6.93382 6.96269 7.28528 7.54283 7.70000 8.35533 8.44471 8.64424 8.72864 9.11846 9.39493 10.57478 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.026326 B = 0.003744 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.343412 B = 7476.121037 C = 8216.169879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.302 6.302 3 C 0.238 3.762 4 N -0.287 5.287 5 N -0.235 5.235 6 C 0.034 3.966 7 C -0.107 4.107 8 C 0.171 3.829 9 N -0.669 5.669 10 C 0.730 3.270 11 O -0.590 6.590 12 N -0.647 5.647 13 C 0.068 3.932 14 C 0.242 3.758 15 O -0.570 6.570 16 C -0.534 4.534 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.281 1.281 24 C 0.129 3.871 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.177 0.823 29 H 0.173 0.827 30 H 0.416 0.584 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.395 0.605 34 H 0.274 0.726 35 H 0.088 0.912 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.529 7.977 -5.597 11.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.206 6.206 3 C 0.049 3.951 4 N -0.143 5.143 5 N -0.079 5.079 6 C -0.133 4.133 7 C -0.139 4.139 8 C 0.061 3.939 9 N -0.317 5.317 10 C 0.434 3.566 11 O -0.469 6.469 12 N -0.382 5.382 13 C -0.055 4.055 14 C 0.200 3.800 15 O -0.384 6.384 16 C -0.572 4.572 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.538 5.538 20 Si 0.737 3.263 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.206 1.206 24 C 0.006 3.994 25 H 0.080 0.920 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.194 0.806 29 H 0.190 0.810 30 H 0.252 0.748 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.251 0.749 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.665 9.607 -5.047 13.286 hybrid contribution 1.326 -2.333 -0.636 2.758 sum -6.340 7.273 -5.684 11.198 Atomic orbital electron populations 1.22977 0.76488 1.03534 1.02689 1.86246 1.23419 1.23018 1.87897 1.21414 0.88957 0.87934 0.96796 1.72902 1.31348 0.93827 1.16217 1.72582 1.11841 1.13163 1.10332 1.24088 0.90459 1.00595 0.98144 1.22552 1.04056 0.89619 0.97646 1.17780 0.87039 0.88536 1.00508 1.42385 1.19359 1.13728 1.56211 1.15192 0.79612 0.82774 0.79049 1.90843 1.71354 1.31423 1.53322 1.48846 1.22729 1.08469 1.58192 1.24307 1.02253 0.77028 1.01898 1.19523 0.88496 0.90023 0.81993 1.86057 1.74715 1.39217 1.38369 1.21447 0.98779 0.90379 1.46639 0.90725 1.25087 0.95521 0.99068 0.93349 1.69266 1.17640 1.19481 1.47388 0.86239 0.80940 0.80872 0.78256 1.19355 1.20563 1.20635 1.23313 0.84262 0.94251 0.97523 0.92023 0.88085 0.91933 0.80597 0.80977 0.74754 0.91771 0.89839 0.74876 0.91534 0.89418 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.40 101.05 1.05 1.44 16 2 O -0.30 -4.20 10.13 -19.02 -0.19 -4.39 16 3 C 0.24 3.61 7.60 -16.78 -0.13 3.48 16 4 N -0.29 -4.36 10.40 30.62 0.32 -4.05 16 5 N -0.24 -3.43 11.49 30.53 0.35 -3.08 16 6 C 0.03 0.42 11.30 -17.42 -0.20 0.22 16 7 C -0.11 -1.53 8.86 -39.07 -0.35 -1.88 16 8 C 0.17 2.69 6.40 -83.20 -0.53 2.15 16 9 N -0.67 -11.00 5.24 -13.89 -0.07 -11.07 16 10 C 0.73 14.26 8.66 -86.92 -0.75 13.51 16 11 O -0.59 -12.63 14.56 5.29 0.08 -12.55 16 12 N -0.65 -12.91 3.69 -191.01 -0.70 -13.62 16 13 C 0.07 1.36 7.71 -8.51 -0.07 1.30 16 14 C 0.24 5.51 1.58 -91.25 -0.14 5.37 16 15 O -0.57 -14.27 13.54 -35.23 -0.48 -14.75 16 16 C -0.53 -12.71 8.70 -34.44 -0.30 -13.01 16 17 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 18 C 0.07 1.72 5.39 -17.82 -0.10 1.63 16 19 N -0.90 -21.86 11.01 55.43 0.61 -21.25 16 20 Si 0.91 18.63 29.54 -169.99 -5.02 13.61 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 C 0.13 2.64 8.03 -8.50 -0.07 2.57 16 25 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 26 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 28 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.17 2.51 6.27 -52.49 -0.33 2.18 16 30 H 0.42 6.21 8.33 -40.82 -0.34 5.87 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 33 H 0.39 10.00 6.32 45.56 0.29 10.29 16 34 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 35 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 36 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 317.52 15.07 4.79 4.79 Total: -1.00 -28.45 317.52 -5.21 -33.65 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -3.30 Total: 15.91 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: -1.58 Total: 16.79 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.50 Total: -53.06 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.59 Total: -31.69 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.45 -5.21 -33.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347380511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.153 kcal (2) G-P(sol) polarization free energy of solvation -28.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds