Wall clock time and date at job start Fri Apr 10 2020 17:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35771 * 116.99675 * 2 1 4 4 N 1.32148 * 120.19149 * 0.26536 * 3 2 1 5 5 N 1.28313 * 122.18112 * 180.27582 * 4 3 2 6 6 C 1.31895 * 122.44128 * 359.71677 * 5 4 3 7 7 C 1.38531 * 120.03825 * 0.02562 * 6 5 4 8 8 C 1.39322 * 117.93779 * 359.97438 * 7 6 5 9 9 N 1.39769 * 121.11398 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99493 * 33.13413 * 9 8 7 11 11 O 1.21584 * 120.00222 * 356.17025 * 10 9 8 12 12 N 1.34778 * 119.99885 * 176.16260 * 10 9 8 13 13 C 1.47070 * 136.05696 * 359.63150 * 12 10 9 14 14 C 1.53491 * 87.98508 * 207.37506 * 13 12 10 15 15 O 1.42904 * 114.20764 * 87.52091 * 14 13 12 16 16 C 1.50700 * 114.38613 * 220.33032 * 14 13 12 17 17 H 1.08005 * 119.99754 * 93.68768 * 16 14 13 18 18 C 1.37875 * 120.00523 * 273.68569 * 16 14 13 19 19 N 1.31515 * 119.99572 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00505 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46568 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47161 * 120.00029 * 20 18 16 23 23 H 1.48503 * 109.46965 * 240.00248 * 20 18 16 24 24 C 1.47068 * 136.06085 * 179.97438 * 12 10 9 25 25 H 1.09007 * 109.47211 * 60.00149 * 1 2 3 26 26 H 1.09000 * 109.47376 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47476 * 299.99670 * 1 2 3 28 28 H 1.07998 * 119.97591 * 179.97438 * 6 5 4 29 29 H 1.07998 * 121.03026 * 180.02562 * 7 6 5 30 30 H 0.97000 * 120.00560 * 213.13179 * 9 8 7 31 31 H 1.09001 * 113.47019 * 322.15407 * 13 12 10 32 32 H 1.09000 * 113.46494 * 92.59537 * 13 12 10 33 33 H 0.96698 * 113.99631 * 86.40228 * 15 14 13 34 34 H 0.96998 * 120.00131 * 179.97438 * 19 18 16 35 35 H 1.09001 * 113.46575 * 267.40831 * 24 12 10 36 36 H 1.09001 * 113.46483 * 37.84029 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 7 1.3292 2.3204 0.0053 5 7 1.8716 3.4832 0.0003 6 6 3.1794 3.6539 -0.0050 7 6 4.0223 2.5545 -0.0058 8 6 3.4425 1.2876 -0.0003 9 7 4.2301 0.1330 -0.0013 10 6 5.4202 0.1285 0.6314 11 8 5.8404 1.1482 1.1432 12 7 6.1443 -1.0063 0.6968 13 6 5.9864 -2.3917 0.2293 14 6 6.8801 -2.8305 1.3975 15 8 6.1737 -3.0790 2.6146 16 6 7.8695 -3.9133 1.0513 17 1 8.8722 -3.6515 0.7474 18 6 7.4946 -5.2382 1.1227 19 7 6.2734 -5.5570 1.4923 20 14 8.7207 -6.5804 0.6930 21 1 10.0160 -5.9633 0.3101 22 1 8.9221 -7.4625 1.8705 23 1 8.1989 -7.3823 -0.4428 24 6 7.4374 -1.4056 1.2724 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 3.5934 4.6514 -0.0095 29 1 5.0954 2.6757 -0.0097 30 1 3.9203 -0.6652 -0.4573 31 1 4.9634 -2.7608 0.3030 32 1 6.4310 -2.5729 -0.7493 33 1 5.8241 -3.9774 2.6900 34 1 6.0094 -6.4891 1.5422 35 1 8.2682 -1.3244 0.5714 36 1 7.6485 -0.9360 2.2331 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347380511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:41 Heat of formation + Delta-G solvation = -25.908941 kcal Electronic energy + Delta-G solvation = -23477.181062 eV Core-core repulsion = 19770.790778 eV Total energy + Delta-G solvation = -3706.390284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.62889 -41.47440 -39.73702 -39.48113 -36.53233 -35.94871 -34.12453 -33.35921 -32.29807 -30.13710 -28.59314 -27.31467 -26.88187 -25.23206 -24.90031 -22.37990 -20.92738 -19.83872 -19.66414 -19.29027 -18.65164 -18.16703 -17.42932 -17.15429 -16.71724 -16.69212 -15.95047 -15.71166 -15.52722 -15.28989 -15.10632 -14.92717 -14.49861 -14.46482 -13.82777 -13.41396 -12.98354 -12.83469 -12.80766 -12.76435 -12.49802 -12.22814 -12.17361 -12.13236 -11.83699 -11.20957 -10.90804 -10.69995 -10.60390 -10.29292 -9.87872 -9.43718 -8.28021 -6.44772 -0.41900 -0.11200 1.15546 1.46922 1.52872 1.62348 1.74413 1.84853 2.39776 2.48019 2.57976 2.95816 3.00946 3.31160 3.63979 3.77290 3.89912 4.08816 4.27174 4.37572 4.37594 4.41311 4.58921 4.62351 4.65441 4.70748 4.82329 4.88313 5.02360 5.21108 5.21929 5.73267 5.85223 5.89537 5.93424 6.62368 6.81681 7.21059 7.30119 7.47826 7.53934 8.78448 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.026326 B = 0.003744 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.343412 B = 7476.121037 C = 8216.169879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.314 6.314 3 C 0.237 3.763 4 N -0.297 5.297 5 N -0.249 5.249 6 C 0.047 3.953 7 C -0.104 4.104 8 C 0.146 3.854 9 N -0.660 5.660 10 C 0.728 3.272 11 O -0.612 6.612 12 N -0.649 5.649 13 C 0.084 3.916 14 C 0.218 3.782 15 O -0.587 6.587 16 C -0.549 4.549 17 H 0.079 0.921 18 C 0.033 3.967 19 N -0.918 5.918 20 Si 0.970 3.030 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.278 1.278 24 C 0.132 3.868 25 H 0.068 0.932 26 H 0.127 0.873 27 H 0.060 0.940 28 H 0.218 0.782 29 H 0.171 0.829 30 H 0.422 0.578 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.389 0.611 34 H 0.276 0.724 35 H 0.111 0.889 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.457 8.387 -6.554 12.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.218 6.218 3 C 0.048 3.952 4 N -0.153 5.153 5 N -0.092 5.092 6 C -0.119 4.119 7 C -0.136 4.136 8 C 0.037 3.963 9 N -0.307 5.307 10 C 0.432 3.568 11 O -0.493 6.493 12 N -0.385 5.385 13 C -0.039 4.039 14 C 0.176 3.824 15 O -0.400 6.400 16 C -0.587 4.587 17 H 0.097 0.903 18 C -0.168 4.168 19 N -0.559 5.559 20 Si 0.796 3.204 21 H -0.189 1.189 22 H -0.210 1.210 23 H -0.203 1.203 24 C 0.010 3.990 25 H 0.087 0.913 26 H 0.145 0.855 27 H 0.079 0.921 28 H 0.235 0.765 29 H 0.188 0.812 30 H 0.260 0.740 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.245 0.755 34 H 0.086 0.914 35 H 0.129 0.871 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.633 10.031 -6.024 13.970 hybrid contribution 1.250 -2.389 -0.316 2.715 sum -6.383 7.642 -6.339 11.804 Atomic orbital electron populations 1.23244 0.74676 1.05354 1.02928 1.86240 1.25278 1.22578 1.87708 1.21454 0.88814 0.88362 0.96593 1.72884 1.31678 0.94013 1.16710 1.72553 1.12899 1.13036 1.10678 1.24636 0.89388 1.01859 0.96032 1.22675 1.04188 0.89744 0.96974 1.18036 0.87435 0.88691 1.02090 1.42161 1.18402 1.14424 1.55754 1.15273 0.80199 0.82274 0.79037 1.90821 1.72107 1.32011 1.54336 1.48776 1.22700 1.08621 1.58407 1.24096 1.01549 0.76781 1.01486 1.19831 0.89337 0.91045 0.82160 1.86042 1.75095 1.38851 1.40005 1.21688 0.99194 0.91010 1.46815 0.90334 1.25756 0.96883 1.00826 0.93296 1.69330 1.18812 1.19874 1.47897 0.85311 0.79151 0.78320 0.77667 1.18880 1.21035 1.20348 1.23311 0.85201 0.92757 0.97758 0.91319 0.85528 0.92130 0.76511 0.81213 0.74046 0.92142 0.88243 0.75486 0.91398 0.87127 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.40 113.37 1.18 1.80 16 2 O -0.31 -8.48 10.13 -90.98 -0.92 -9.40 16 3 C 0.24 7.00 7.60 85.06 0.65 7.64 16 4 N -0.30 -8.70 10.40 -169.89 -1.77 -10.47 16 5 N -0.25 -6.82 11.49 -57.33 -0.66 -7.48 16 6 C 0.05 1.08 11.30 84.75 0.96 2.03 16 7 C -0.10 -2.83 8.86 22.60 0.20 -2.63 16 8 C 0.15 4.47 6.40 38.55 0.25 4.72 16 9 N -0.66 -21.28 5.24 -316.14 -1.66 -22.93 16 10 C 0.73 28.05 8.66 179.05 1.55 29.60 16 11 O -0.61 -25.85 14.56 -3.98 -0.06 -25.91 16 12 N -0.65 -25.51 3.69 -876.98 -3.24 -28.74 16 13 C 0.08 3.28 7.71 83.17 0.64 3.93 16 14 C 0.22 9.87 1.58 -11.20 -0.02 9.86 16 15 O -0.59 -29.73 13.54 -148.98 -2.02 -31.75 16 16 C -0.55 -25.75 8.70 25.60 0.22 -25.53 16 17 H 0.08 3.53 7.81 -2.91 -0.02 3.51 16 18 C 0.03 1.54 5.39 84.65 0.46 1.99 16 19 N -0.92 -44.58 11.01 21.45 0.24 -44.35 16 20 Si 0.97 37.56 29.54 68.60 2.03 39.59 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 24 C 0.13 5.35 8.03 83.18 0.67 6.02 16 25 H 0.07 1.21 8.12 -2.38 -0.02 1.19 16 26 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 1.18 8.11 -2.39 -0.02 1.16 16 28 H 0.22 2.93 8.06 -2.91 -0.02 2.90 16 29 H 0.17 4.75 6.27 -2.91 -0.02 4.73 16 30 H 0.42 12.35 8.33 -92.71 -0.77 11.58 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.10 3.57 8.10 -2.39 -0.02 3.55 16 33 H 0.39 20.10 6.32 -74.06 -0.47 19.63 16 34 H 0.28 12.71 8.31 -92.71 -0.77 11.94 16 35 H 0.11 3.91 8.10 -2.39 -0.02 3.89 16 36 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -59.57 317.52 -1.39 -60.96 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -0.09 Total: 41.06 kcal Atomic # 6 Polarization: 32.66 SS G_CDS: 6.75 Total: 39.41 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -7.08 Total: -113.97 kcal Atomic # 8 Polarization: -64.05 SS G_CDS: -3.00 Total: -67.05 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Total: -59.57 -1.39 -60.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347380511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.052 kcal (2) G-P(sol) polarization free energy of solvation -59.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds