Wall clock time and date at job start Fri Apr 10 2020 17:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34786 * 119.86344 * 2 1 4 4 N 1.30477 * 121.70084 * 179.70388 * 3 2 1 5 5 C 1.34164 * 121.31482 * 0.57639 * 4 3 2 6 6 N 1.38534 * 120.21482 * 179.73695 * 5 4 3 7 7 C 1.34775 * 120.00050 * 359.97438 * 6 5 4 8 8 O 1.21566 * 119.99890 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00064 * 180.02562 * 7 6 5 10 10 C 1.47063 * 136.05479 * 359.62670 * 9 7 6 11 11 C 1.53245 * 88.08095 * 207.20557 * 10 9 7 12 12 O 1.42900 * 114.01782 * 87.71689 * 11 10 9 13 13 C 1.50697 * 114.50205 * 220.45762 * 11 10 9 14 14 H 1.08010 * 120.00104 * 99.20433 * 13 11 10 15 15 C 1.37879 * 120.00326 * 279.19653 * 13 11 10 16 16 N 1.31519 * 119.99731 * 7.47562 * 15 13 11 17 17 Si 1.86803 * 120.00191 * 187.46991 * 15 13 11 18 18 H 1.48500 * 109.46821 * 84.99332 * 17 15 13 19 19 H 1.48498 * 109.46915 * 204.99494 * 17 15 13 20 20 H 1.48504 * 109.47021 * 324.99468 * 17 15 13 21 21 C 1.47069 * 136.05833 * 179.97438 * 9 7 6 22 22 C 1.38325 * 119.56602 * 359.71170 * 5 4 3 23 23 C 1.34952 * 119.86936 * 180.27064 * 2 1 3 24 24 O 1.22051 * 120.64182 * 359.97438 * 23 2 1 25 25 H 1.09005 * 109.47177 * 269.72376 * 1 2 3 26 26 H 1.08996 * 109.46567 * 149.73014 * 1 2 3 27 27 H 1.08993 * 109.47345 * 29.73046 * 1 2 3 28 28 H 1.08001 * 119.14939 * 359.97438 * 3 2 1 29 29 H 0.96998 * 119.99663 * 179.97438 * 6 5 4 30 30 H 1.09004 * 113.46872 * 321.93645 * 10 9 7 31 31 H 1.09003 * 113.46995 * 92.38083 * 10 9 7 32 32 H 0.96707 * 113.99553 * 80.59271 * 12 11 10 33 33 H 0.97001 * 119.99627 * 180.02562 * 16 15 13 34 34 H 1.08996 * 113.46798 * 267.62377 * 21 9 7 35 35 H 1.09003 * 113.46770 * 38.06471 * 21 9 7 36 36 H 1.07999 * 120.77942 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1361 1.1689 0.0000 4 7 3.4402 1.2107 0.0057 5 6 4.1740 0.0875 0.0004 6 7 5.5575 0.1585 0.0012 7 6 6.1706 1.3587 0.0068 8 8 5.5096 2.3790 0.0107 9 7 7.5166 1.4278 0.0071 10 6 8.6264 0.4629 0.0091 11 6 9.4813 1.5258 0.7076 12 8 9.3739 1.5142 2.1326 13 6 10.9043 1.6041 0.2181 14 1 11.1890 2.3633 -0.4954 15 6 11.8431 0.7066 0.6811 16 7 11.4701 -0.3057 1.4333 17 14 13.6447 0.9285 0.2399 18 1 14.2774 1.8681 1.2002 19 1 14.3353 -0.3846 0.3040 20 1 13.7534 1.4784 -1.1353 21 6 8.5219 2.5013 0.0116 22 6 3.5400 -1.1419 -0.0054 23 6 2.1371 -1.1702 -0.0055 24 8 1.5363 -2.2326 -0.0101 25 1 -0.3634 -0.0050 1.0277 26 1 -0.3632 -0.8876 -0.5180 27 1 -0.3634 0.8923 -0.5096 28 1 1.5801 2.0948 -0.0004 29 1 6.0849 -0.6555 -0.0023 30 1 8.4373 -0.4149 0.6270 31 1 8.9816 0.2076 -0.9894 32 1 9.9148 0.8374 2.5622 33 1 12.1306 -0.9368 1.7593 34 1 8.8488 2.7941 -0.9861 35 1 8.2440 3.3536 0.6317 36 1 4.1113 -2.0583 -0.0093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001562978540.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:54 Heat of formation + Delta-G solvation = -4.143337 kcal Electronic energy + Delta-G solvation = -23191.924756 eV Core-core repulsion = 19486.478299 eV Total energy + Delta-G solvation = -3705.446457 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.81158 -40.07136 -38.41034 -37.26544 -35.77514 -34.09079 -33.59947 -32.34868 -30.67855 -28.87850 -27.46399 -25.43658 -25.19875 -24.78987 -23.05046 -20.92365 -19.55226 -18.29421 -17.90545 -17.41465 -17.22840 -16.63106 -16.47361 -15.61817 -15.24715 -15.18298 -14.80256 -14.33588 -14.16845 -13.77570 -13.55212 -13.39328 -13.09731 -12.92266 -12.69428 -12.63319 -12.12590 -11.70865 -11.22528 -11.10004 -11.03767 -10.55146 -10.49135 -10.37053 -10.18915 -9.55655 -9.36710 -9.23719 -8.89430 -8.51381 -8.27047 -7.89369 -6.45107 -4.54136 0.59522 1.90600 2.32876 2.60073 3.13180 3.21233 3.23085 3.37239 3.77328 3.86359 4.14340 4.24326 4.47722 4.62318 4.79251 4.94013 5.00079 5.24223 5.39450 5.44144 5.52555 5.77428 5.92970 6.06627 6.22440 6.31963 6.45728 6.51920 6.57828 6.62191 6.94461 7.15003 7.56957 7.75737 7.83964 7.86571 8.44617 8.49751 8.89024 9.16642 9.22025 10.62209 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.038988 B = 0.003151 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.988661 B = 8882.778706 C = 9312.541435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.538 5.538 3 C 0.392 3.608 4 N -0.511 5.511 5 C 0.450 3.550 6 N -0.655 5.655 7 C 0.717 3.283 8 O -0.542 6.542 9 N -0.653 5.653 10 C 0.073 3.927 11 C 0.241 3.759 12 O -0.567 6.567 13 C -0.537 4.537 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.893 5.893 17 Si 0.906 3.094 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.133 3.867 22 C -0.370 4.370 23 C 0.535 3.465 24 O -0.555 6.555 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.208 0.792 29 H 0.419 0.581 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.388 0.612 33 H 0.272 0.728 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.845 0.527 -3.163 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.257 5.257 3 C 0.105 3.895 4 N -0.235 5.235 5 C 0.229 3.771 6 N -0.299 5.299 7 C 0.420 3.580 8 O -0.415 6.415 9 N -0.391 5.391 10 C -0.050 4.050 11 C 0.199 3.801 12 O -0.376 6.376 13 C -0.575 4.575 14 H 0.091 0.909 15 C -0.129 4.129 16 N -0.532 5.532 17 Si 0.733 3.267 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.196 1.196 21 C 0.011 3.989 22 C -0.400 4.400 23 C 0.337 3.663 24 O -0.436 6.436 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.225 0.775 29 H 0.256 0.744 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.239 0.761 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.559 1.611 -3.170 15.960 hybrid contribution 1.306 -1.714 -0.127 2.159 sum -14.253 -0.104 -3.297 14.630 Atomic orbital electron populations 1.22137 0.77019 1.05082 1.04064 1.46810 1.10446 1.08427 1.60052 1.25039 0.88600 0.89908 0.85951 1.68539 1.03322 1.28025 1.23599 1.18382 0.83951 0.89118 0.85682 1.42752 1.03478 1.10323 1.73350 1.15373 0.80822 0.83021 0.78776 1.90979 1.62788 1.32338 1.55433 1.48976 1.01081 1.14477 1.74517 1.24162 0.83710 0.95717 1.01399 1.19492 0.91553 0.89136 0.79911 1.86098 1.71426 1.61013 1.19059 1.21332 0.92766 1.16400 1.27043 0.90891 1.25068 0.99950 0.93839 0.94090 1.69655 1.35186 1.13269 1.35051 0.86378 0.83467 0.77673 0.79189 1.20130 1.21055 1.19609 1.23210 0.83348 0.92252 1.00118 1.22162 0.93351 0.97841 1.26652 1.16571 0.88171 0.82870 0.78648 1.90932 1.70307 1.28306 1.54031 0.90428 0.88829 0.89352 0.77530 0.74382 0.91806 0.89922 0.76051 0.91797 0.89465 0.91319 0.82993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.39 59.85 0.62 0.99 16 2 N -0.54 -5.61 2.97 -128.82 -0.38 -5.99 16 3 C 0.39 3.96 11.46 -90.63 -1.04 2.92 16 4 N -0.51 -7.75 7.94 -13.47 -0.11 -7.85 16 5 C 0.45 7.03 7.43 -154.25 -1.15 5.88 16 6 N -0.66 -10.77 5.37 -15.81 -0.08 -10.85 16 7 C 0.72 14.34 8.75 -86.92 -0.76 13.58 16 8 O -0.54 -12.15 15.36 5.31 0.08 -12.07 16 9 N -0.65 -13.17 3.69 -191.16 -0.71 -13.87 16 10 C 0.07 1.47 7.69 -8.64 -0.07 1.41 16 11 C 0.24 5.47 1.40 -91.38 -0.13 5.34 16 12 O -0.57 -13.82 13.51 -35.23 -0.48 -14.29 16 13 C -0.54 -12.88 8.67 -34.44 -0.30 -13.18 16 14 H 0.07 1.71 7.83 -52.48 -0.41 1.30 16 15 C 0.07 1.78 5.33 -17.82 -0.09 1.68 16 16 N -0.89 -21.75 11.64 55.43 0.65 -21.11 16 17 Si 0.91 18.89 29.54 -169.99 -5.02 13.87 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 C 0.13 2.76 8.04 -8.49 -0.07 2.69 16 22 C -0.37 -5.35 9.94 -38.77 -0.39 -5.74 16 23 C 0.53 7.74 7.42 -15.40 -0.11 7.63 16 24 O -0.55 -9.57 16.76 4.87 0.08 -9.49 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.70 7.44 -51.93 -0.39 0.31 16 27 H 0.09 0.23 8.00 -51.93 -0.42 -0.19 16 28 H 0.21 1.03 8.01 -52.49 -0.42 0.61 16 29 H 0.42 5.91 8.41 -40.82 -0.34 5.57 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 32 H 0.39 9.45 7.10 45.56 0.32 9.78 16 33 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 34 H 0.09 1.64 8.10 -51.93 -0.42 1.22 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.15 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 318.40 15.07 4.80 4.80 Total: -1.00 -32.57 318.40 -7.97 -40.54 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -3.32 Total: 13.11 kcal Atomic # 6 Polarization: 26.69 SS G_CDS: -3.48 Total: 23.21 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.63 Total: -59.68 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.31 Total: -35.86 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.57 -7.97 -40.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562978540.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.395 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds