Wall clock time and date at job start Fri Apr 10 2020 17:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 117.00360 * 2 1 4 4 O 1.20823 * 119.99856 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00121 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47070 * 179.97438 * 5 3 2 7 7 C 1.37091 * 120.00266 * 269.99988 * 6 5 3 8 8 H 1.08004 * 120.00393 * 203.01194 * 7 6 5 9 9 C 1.38955 * 119.99958 * 23.00131 * 7 6 5 10 10 N 1.31408 * 119.99797 * 351.40169 * 9 7 6 11 11 Si 1.86800 * 120.00011 * 171.39400 * 9 7 6 12 12 H 1.48501 * 109.46899 * 90.00349 * 11 9 7 13 13 H 1.48498 * 109.46952 * 210.00339 * 11 9 7 14 14 H 1.48501 * 109.47274 * 330.00485 * 11 9 7 15 15 C 1.34781 * 120.00142 * 89.99238 * 6 5 3 16 16 O 1.21300 * 119.99670 * 5.13403 * 15 6 5 17 17 C 1.50697 * 120.00376 * 185.12453 * 15 6 5 18 18 H 1.09000 * 110.16525 * 34.48480 * 17 15 6 19 19 N 1.48021 * 110.26255 * 156.32564 * 17 15 6 20 20 C 1.48027 * 104.14878 * 147.00790 * 19 17 15 21 21 C 1.51190 * 105.74537 * 332.09246 * 20 19 17 22 22 N 1.30719 * 143.91392 * 197.60343 * 21 20 19 23 23 N 1.40105 * 108.25230 * 180.02562 * 22 21 20 24 24 H 0.97004 * 126.03191 * 179.97438 * 23 22 21 25 25 C 1.34968 * 107.93115 * 359.97438 * 23 22 21 26 26 C 1.35147 * 107.77305 * 0.02562 * 25 23 22 27 27 H 1.09001 * 109.47266 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47305 * 300.00528 * 1 2 3 29 29 H 1.09001 * 109.46634 * 60.00168 * 1 2 3 30 30 H 1.08992 * 109.47123 * 59.99500 * 5 3 2 31 31 H 1.09005 * 109.46777 * 299.99320 * 5 3 2 32 32 H 0.97005 * 119.99949 * 185.01103 * 10 9 7 33 33 H 1.00897 * 111.00357 * 266.51914 * 19 17 15 34 34 H 1.09000 * 110.19458 * 213.02849 * 20 19 17 35 35 H 1.08993 * 110.25616 * 91.19462 * 20 19 17 36 36 H 1.07995 * 126.11613 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 4.1758 3.3367 -1.1885 8 1 4.8144 4.2069 -1.2262 9 6 3.5509 2.8830 -2.3438 10 7 2.9133 1.7340 -2.3379 11 14 3.6170 3.9066 -3.9050 12 1 4.8121 3.5225 -4.6983 13 1 2.3913 3.6647 -4.7077 14 1 3.7002 5.3461 -3.5500 15 6 4.1732 3.3262 1.1659 16 8 4.0927 2.7217 2.2145 17 6 4.4875 4.8001 1.1681 18 1 3.9631 5.2973 0.3521 19 7 4.1050 5.4038 2.4643 20 6 5.1070 6.4728 2.6752 21 6 6.3502 6.0200 1.9436 22 7 7.6390 6.2086 1.8339 23 7 8.1291 5.3323 0.8567 24 1 9.0526 5.2567 0.5695 25 6 7.0895 4.6121 0.3853 26 6 5.9777 5.0161 1.0389 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.9557 0.7808 -0.8907 31 1 3.9564 0.7805 0.8893 32 1 2.5396 1.3824 -3.1612 33 1 3.1720 5.7858 2.4241 34 1 5.3170 6.5872 3.7387 35 1 4.7477 7.4142 2.2597 36 1 7.1375 3.8493 -0.3776 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578812035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:58 Heat of formation + Delta-G solvation = -17.492900 kcal Electronic energy + Delta-G solvation = -24559.656639 eV Core-core repulsion = 20853.631302 eV Total energy + Delta-G solvation = -3706.025337 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.66874 -41.21567 -40.05307 -37.85471 -37.06273 -36.38494 -33.40204 -32.31192 -31.27637 -30.22653 -28.66972 -27.71072 -26.45597 -25.13049 -22.68685 -21.54174 -20.77282 -20.76612 -18.79201 -18.53642 -18.22994 -18.18360 -17.22718 -17.11267 -16.85715 -16.28210 -16.08981 -15.52277 -15.40223 -14.92259 -14.67124 -14.23647 -14.10420 -14.00198 -13.84862 -13.30630 -13.20109 -13.03074 -12.91906 -12.81835 -12.60463 -12.32565 -12.14450 -11.59223 -11.53185 -11.40802 -10.86995 -10.62465 -10.49099 -9.90937 -9.80123 -9.11549 -8.27426 -5.94180 0.84324 1.40467 1.49111 1.58006 1.59273 1.72952 1.81683 1.89998 2.27980 2.39457 2.83102 2.99415 3.19676 3.49290 3.84365 4.24755 4.30125 4.37817 4.40061 4.42950 4.43918 4.49751 4.61954 4.68652 4.76362 4.88847 5.01071 5.03682 5.35548 5.46321 5.58424 5.70250 5.81813 6.29688 6.41578 6.43579 6.64751 7.13867 7.28837 7.57321 7.97414 8.73947 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.006524 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.540997 B = 4290.752437 C = 5353.265446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.492 3.508 4 O -0.548 6.548 5 C 0.154 3.846 6 N -0.444 5.444 7 C -0.331 4.331 8 H 0.115 0.885 9 C 0.002 3.998 10 N -0.905 5.905 11 Si 0.989 3.011 12 H -0.263 1.263 13 H -0.295 1.295 14 H -0.265 1.265 15 C 0.479 3.521 16 O -0.613 6.613 17 C 0.159 3.841 18 H 0.077 0.923 19 N -0.653 5.653 20 C 0.138 3.862 21 C 0.042 3.958 22 N -0.289 5.289 23 N -0.460 5.460 24 H 0.459 0.541 25 C 0.103 3.897 26 C -0.275 4.275 27 H 0.132 0.868 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.136 0.864 31 H 0.075 0.925 32 H 0.270 0.730 33 H 0.359 0.641 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.201 3.696 -0.066 5.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.335 3.665 4 O -0.438 6.438 5 C 0.028 3.972 6 N -0.163 5.163 7 C -0.458 4.458 8 H 0.132 0.868 9 C -0.199 4.199 10 N -0.545 5.545 11 Si 0.814 3.186 12 H -0.188 1.188 13 H -0.222 1.222 14 H -0.189 1.189 15 C 0.268 3.732 16 O -0.498 6.498 17 C 0.045 3.955 18 H 0.095 0.905 19 N -0.284 5.284 20 C 0.007 3.993 21 C -0.126 4.126 22 N -0.112 5.112 23 N -0.171 5.171 24 H 0.307 0.693 25 C -0.045 4.045 26 C -0.287 4.287 27 H 0.150 0.850 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.154 0.846 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.177 0.823 34 H 0.128 0.872 35 H 0.113 0.887 36 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.069 3.744 1.194 6.413 hybrid contribution -1.065 0.232 -2.149 2.410 sum 4.004 3.976 -0.956 5.723 Atomic orbital electron populations 1.23267 0.76444 1.04734 1.01082 1.86431 1.23891 1.34009 1.85008 1.24100 0.92690 0.80614 0.69047 1.90456 1.67497 1.37647 1.48164 1.20621 0.86825 0.86091 1.03646 1.43511 1.58645 1.08470 1.05708 1.19960 1.27872 1.13069 0.84873 0.86751 1.26035 0.94051 0.97030 1.02739 1.69696 1.36965 1.19047 1.28835 0.84966 0.77494 0.78811 0.77359 1.18846 1.22159 1.18919 1.20574 0.80306 0.89643 0.82698 1.90496 1.57556 1.69014 1.32765 1.19783 0.91292 0.92431 0.91982 0.90529 1.62990 1.06452 1.28499 1.30493 1.20880 0.84264 0.93331 1.00792 1.23477 0.93193 0.97598 0.98356 1.76761 1.09140 1.15281 1.10049 1.46389 1.10469 1.29532 1.30743 0.69270 1.21883 0.86452 0.97006 0.99151 1.20545 0.95595 1.06435 1.06168 0.84985 0.93133 0.93714 0.84648 0.90692 0.91924 0.82269 0.87218 0.88725 0.78359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 10.56 113.37 1.20 2.50 16 2 O -0.38 -16.32 10.57 -51.44 -0.54 -16.87 16 3 C 0.49 24.61 5.91 71.24 0.42 25.03 16 4 O -0.55 -30.45 15.93 21.97 0.35 -30.10 16 5 C 0.15 7.47 5.29 85.63 0.45 7.93 16 6 N -0.44 -21.72 2.11 -639.59 -1.35 -23.07 16 7 C -0.33 -15.48 8.71 84.04 0.73 -14.75 16 8 H 0.11 4.93 6.05 -2.91 -0.02 4.91 16 9 C 0.00 0.09 5.41 84.93 0.46 0.55 16 10 N -0.90 -44.82 8.21 21.66 0.18 -44.65 16 11 Si 0.99 38.04 29.56 68.60 2.03 40.07 16 12 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 13 H -0.30 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 15 C 0.48 23.41 6.89 87.66 0.60 24.01 16 16 O -0.61 -33.77 16.20 -3.09 -0.05 -33.82 16 17 C 0.16 6.42 2.71 43.35 0.12 6.54 16 18 H 0.08 3.13 7.10 -2.39 -0.02 3.11 16 19 N -0.65 -23.23 6.98 -496.51 -3.46 -26.70 16 20 C 0.14 3.91 7.45 85.50 0.64 4.55 16 21 C 0.04 1.41 8.24 43.35 0.36 1.77 16 22 N -0.29 -9.09 12.69 -46.86 -0.59 -9.69 16 23 N -0.46 -11.96 7.36 -57.68 -0.42 -12.38 16 24 H 0.46 7.86 8.96 -213.31 -1.91 5.95 16 25 C 0.10 3.14 11.74 83.50 0.98 4.12 16 26 C -0.27 -9.97 5.72 -19.97 -0.11 -10.08 16 27 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 28 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 29 H 0.04 1.59 8.13 -2.39 -0.02 1.57 16 30 H 0.14 6.55 6.28 -2.39 -0.02 6.53 16 31 H 0.08 3.57 7.36 -2.38 -0.02 3.55 16 32 H 0.27 12.99 8.32 -92.70 -0.77 12.22 16 33 H 0.36 11.17 8.91 -89.70 -0.80 10.37 16 34 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.20 5.32 8.06 -2.91 -0.02 5.30 16 Total: -1.00 -71.44 311.29 0.42 -71.02 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -1.55 Total: 34.03 kcal Atomic # 6 Polarization: 46.31 SS G_CDS: 5.84 Total: 52.16 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -5.66 Total: -116.49 kcal Atomic # 8 Polarization: -80.54 SS G_CDS: -0.24 Total: -80.79 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -71.44 0.42 -71.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578812035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.524 kcal (2) G-P(sol) polarization free energy of solvation -71.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds