Wall clock time and date at job start Fri Apr 10 2020 17:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86794 * 120.00068 * 2 1 4 4 H 1.48501 * 109.47109 * 275.15835 * 3 2 1 5 5 H 1.48500 * 109.47134 * 35.15377 * 3 2 1 6 6 H 1.48493 * 109.47264 * 155.15269 * 3 2 1 7 7 C 1.38947 * 119.99922 * 179.72717 * 2 1 3 8 8 H 1.08005 * 120.00164 * 346.46875 * 7 2 1 9 9 N 1.37095 * 120.00244 * 166.46924 * 7 2 1 10 10 C 1.46499 * 120.00299 * 130.98359 * 9 7 2 11 11 C 1.50701 * 109.46736 * 97.00011 * 10 9 7 12 12 O 1.20827 * 120.00532 * 359.56973 * 11 10 9 13 13 O 1.34237 * 119.99785 * 179.56831 * 11 10 9 14 14 C 1.34781 * 120.00005 * 310.98627 * 9 7 2 15 15 O 1.21297 * 119.99458 * 5.64268 * 14 9 7 16 16 C 1.50694 * 119.99961 * 185.63653 * 14 9 7 17 17 H 1.08993 * 109.71642 * 36.20021 * 16 14 9 18 18 C 1.53427 * 109.71459 * 156.80056 * 16 14 9 19 19 C 1.53141 * 109.26253 * 168.29799 * 18 16 14 20 20 C 1.53303 * 109.54507 * 290.90723 * 19 18 16 21 21 N 1.46308 * 108.76759 * 50.11096 * 20 19 18 22 22 N 1.39755 * 128.30867 * 162.91199 * 21 20 19 23 23 C 1.30967 * 106.58275 * 180.14181 * 22 21 20 24 24 N 1.33476 * 109.00745 * 359.96416 * 23 22 21 25 25 C 1.30327 * 109.72530 * 359.97073 * 24 23 22 26 26 H 0.96996 * 120.00341 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47200 * 216.99933 * 10 9 7 28 28 H 1.09000 * 109.47144 * 337.00179 * 10 9 7 29 29 H 0.96695 * 117.00162 * 179.97438 * 13 11 10 30 30 H 1.08997 * 109.51210 * 288.29352 * 18 16 14 31 31 H 1.08999 * 109.50673 * 48.42500 * 18 16 14 32 32 H 1.09001 * 109.46723 * 170.86819 * 19 18 16 33 33 H 1.09003 * 109.41872 * 50.91657 * 19 18 16 34 34 H 1.09003 * 109.58561 * 290.32676 * 20 19 18 35 35 H 1.08994 * 109.59240 * 169.89473 * 20 19 18 36 36 H 1.08005 * 125.49901 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3866 2.1093 -1.3944 5 1 1.5043 2.6187 0.8061 6 1 3.5958 1.4112 0.5883 7 6 2.0089 -1.2033 0.0057 8 1 1.4913 -2.1246 0.2290 9 7 3.3513 -1.2212 -0.2720 10 6 4.2726 -1.9401 0.6115 11 6 4.5467 -3.3092 0.0445 12 8 4.0199 -3.6524 -0.9873 13 8 5.3763 -4.1474 0.6857 14 6 3.8235 -0.5773 -1.3578 15 8 3.0781 0.1021 -2.0317 16 6 5.2773 -0.7014 -1.7344 17 1 5.6283 -1.7103 -1.5182 18 6 5.4522 -0.4017 -3.2289 19 6 6.9429 -0.2421 -3.5411 20 6 7.4671 1.0458 -2.8956 21 7 7.0609 1.0671 -1.4902 22 7 7.5703 1.8530 -0.4529 23 6 6.9030 1.5265 0.6257 24 7 6.0096 0.5846 0.3158 25 6 6.0929 0.2998 -0.9533 26 1 -0.4850 0.8400 0.0004 27 1 5.2077 -1.3855 0.6902 28 1 3.8247 -2.0393 1.6003 29 1 5.5208 -5.0149 0.2837 30 1 5.0427 -1.2241 -3.8155 31 1 4.9282 0.5208 -3.4789 32 1 7.0846 -0.1910 -4.6207 33 1 7.4901 -1.0967 -3.1431 34 1 7.0470 1.9098 -3.4105 35 1 8.5547 1.0715 -2.9619 36 1 7.0516 1.9511 1.6076 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069030.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:10 Heat of formation + Delta-G solvation = -39.078120 kcal Electronic energy + Delta-G solvation = -25301.455208 eV Core-core repulsion = 21594.493866 eV Total energy + Delta-G solvation = -3706.961342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.52472 -41.58069 -40.46851 -37.87297 -37.12848 -36.34051 -34.74061 -33.88935 -31.64176 -30.87274 -29.65004 -27.30589 -25.32912 -23.96282 -23.25576 -22.94251 -21.41451 -20.28396 -19.46890 -19.11109 -18.14282 -17.98586 -17.35835 -17.21955 -16.92602 -16.52482 -16.15120 -16.04634 -15.65096 -15.29157 -14.95196 -14.81124 -14.33239 -14.01360 -13.89562 -13.44219 -13.33078 -13.18604 -13.05384 -12.72359 -12.46719 -12.34929 -12.19907 -11.98902 -11.97019 -11.70260 -11.06802 -10.89797 -10.87475 -10.68540 -10.35332 -9.73570 -8.44916 -6.32624 0.42924 1.07742 1.22238 1.33627 1.45801 1.48609 1.68077 1.82686 2.17791 2.40207 2.59569 2.88834 2.99659 3.26074 3.44625 3.57874 3.91353 3.95866 3.96985 4.15427 4.23700 4.28980 4.48363 4.56888 4.60953 4.64905 4.82808 4.89744 5.15367 5.26767 5.42610 5.61406 5.64949 5.67347 5.80667 6.59224 6.76593 7.00931 7.05494 7.20337 7.67081 8.62868 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.009056 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.571666 B = 3091.270878 C = 3924.133885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.051 3.949 3 Si 0.953 3.047 4 H -0.297 1.297 5 H -0.312 1.312 6 H -0.224 1.224 7 C -0.339 4.339 8 H 0.066 0.934 9 N -0.448 5.448 10 C 0.101 3.899 11 C 0.465 3.535 12 O -0.539 6.539 13 O -0.503 6.503 14 C 0.481 3.519 15 O -0.573 6.573 16 C -0.023 4.023 17 H 0.122 0.878 18 C -0.115 4.115 19 C -0.120 4.120 20 C 0.114 3.886 21 N -0.368 5.368 22 N -0.329 5.329 23 C 0.193 3.807 24 N -0.554 5.554 25 C 0.272 3.728 26 H 0.273 0.727 27 H 0.141 0.859 28 H 0.133 0.867 29 H 0.426 0.574 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.139 0.861 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.128 0.872 36 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.059 -2.585 -2.531 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.154 4.154 3 Si 0.782 3.218 4 H -0.225 1.225 5 H -0.241 1.241 6 H -0.146 1.146 7 C -0.466 4.466 8 H 0.083 0.917 9 N -0.169 5.169 10 C -0.024 4.024 11 C 0.307 3.693 12 O -0.428 6.428 13 O -0.316 6.316 14 C 0.270 3.730 15 O -0.456 6.456 16 C -0.047 4.047 17 H 0.140 0.860 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.006 4.006 21 N -0.160 5.160 22 N -0.157 5.157 23 C -0.109 4.109 24 N -0.282 5.282 25 C -0.005 4.005 26 H 0.083 0.917 27 H 0.158 0.842 28 H 0.151 0.849 29 H 0.288 0.712 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.146 0.854 36 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 20.731 -1.490 -2.810 20.974 hybrid contribution -0.702 0.052 -0.279 0.757 sum 20.029 -1.438 -3.089 20.317 Atomic orbital electron populations 1.69789 1.08005 1.28751 1.48268 1.25940 0.95403 1.01965 0.92093 0.85587 0.81219 0.78817 0.76166 1.22523 1.24134 1.14632 1.18642 0.82576 0.94048 1.51370 0.91661 1.43176 1.06185 1.46597 1.20926 1.21529 0.98087 0.86938 0.95822 1.24373 0.74689 0.88241 0.81991 1.90736 1.49257 1.77110 1.25732 1.84503 1.60928 1.30824 1.55342 1.20565 0.89588 0.82411 0.80421 1.90499 1.59851 1.42086 1.53190 1.20174 0.90051 0.97332 0.97161 0.85987 1.21679 0.98890 1.04323 0.90465 1.22043 0.92833 0.96406 1.04522 1.22396 1.03599 1.01101 0.73538 1.50570 1.26663 1.28150 1.10590 1.77848 1.24256 1.17529 0.96062 1.26764 0.90411 0.93705 1.00017 1.70244 1.25527 1.19920 1.12516 1.23675 0.91444 0.95295 0.90126 0.91738 0.84220 0.84901 0.71224 0.88533 0.91658 0.84264 0.88903 0.88740 0.85445 0.73371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.38 13.96 21.66 0.30 -58.08 16 2 C 0.05 3.09 4.99 84.93 0.42 3.51 16 3 Si 0.95 51.89 24.69 68.60 1.69 53.58 16 4 H -0.30 -17.55 6.45 99.48 0.64 -16.91 16 5 H -0.31 -16.67 7.11 99.48 0.71 -15.96 16 6 H -0.22 -11.19 6.32 99.48 0.63 -10.56 16 7 C -0.34 -19.81 9.61 84.04 0.81 -19.01 16 8 H 0.07 4.12 8.06 -2.91 -0.02 4.09 16 9 N -0.45 -21.59 1.63 -639.60 -1.04 -22.63 16 10 C 0.10 3.71 5.66 85.63 0.48 4.20 16 11 C 0.47 15.31 7.07 71.24 0.50 15.82 16 12 O -0.54 -21.79 16.81 21.96 0.37 -21.42 16 13 O -0.50 -11.33 13.42 -51.49 -0.69 -12.02 16 14 C 0.48 22.70 4.86 87.65 0.43 23.13 16 15 O -0.57 -32.05 11.46 -3.08 -0.04 -32.09 16 16 C -0.02 -0.79 2.10 -12.07 -0.03 -0.82 16 17 H 0.12 3.75 6.06 -2.39 -0.01 3.73 16 18 C -0.12 -3.15 5.02 30.78 0.15 -2.99 16 19 C -0.12 -1.85 5.94 30.74 0.18 -1.67 16 20 C 0.11 2.04 7.30 86.52 0.63 2.67 16 21 N -0.37 -10.35 4.04 -338.33 -1.37 -11.71 16 22 N -0.33 -9.58 12.74 -60.96 -0.78 -10.36 16 23 C 0.19 5.52 13.04 180.62 2.35 7.88 16 24 N -0.55 -19.08 8.33 -191.34 -1.59 -20.67 16 25 C 0.27 9.03 6.65 138.36 0.92 9.95 16 26 H 0.27 16.57 8.31 -92.71 -0.77 15.80 16 27 H 0.14 4.65 4.82 -2.39 -0.01 4.64 16 28 H 0.13 4.59 7.99 -2.39 -0.02 4.57 16 29 H 0.43 5.49 9.10 -74.06 -0.67 4.81 16 30 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.06 2.12 7.44 -2.39 -0.02 2.10 16 32 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.21 8.12 -2.39 -0.02 1.19 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.25 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -87.62 299.70 4.05 -83.57 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.33 Total: 9.17 kcal Atomic # 6 Polarization: 35.80 SS G_CDS: 6.86 Total: 42.67 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -4.48 Total: -123.46 kcal Atomic # 8 Polarization: -65.17 SS G_CDS: -0.36 Total: -65.53 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 1.69 Total: 53.58 kcal Total: -87.62 4.05 -83.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069030.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.489 kcal (2) G-P(sol) polarization free energy of solvation -87.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds