Wall clock time and date at job start Fri Apr 10 2020 17:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99934 * 2 1 4 4 H 1.48503 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47265 * 299.99966 * 3 2 1 6 6 H 1.48501 * 109.46931 * 60.00140 * 3 2 1 7 7 C 1.38811 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99720 * 195.18791 * 7 2 1 9 9 N 1.36937 * 120.00375 * 15.19310 * 7 2 1 10 10 C 1.47166 * 120.70587 * 25.33786 * 9 7 2 11 11 C 1.54488 * 108.00239 * 132.63943 * 10 9 7 12 12 H 1.08998 * 112.35071 * 181.98643 * 11 10 9 13 13 C 1.54544 * 107.85842 * 306.76948 * 11 10 9 14 14 C 1.53730 * 104.95598 * 88.85524 * 13 11 10 15 15 C 1.54545 * 104.95624 * 0.02562 * 14 13 11 16 16 H 1.08999 * 112.68470 * 146.56283 * 15 14 13 17 17 C 1.47161 * 120.71225 * 205.32337 * 9 7 2 18 18 N 1.48308 * 106.89526 * 58.49150 * 11 10 9 19 19 C 1.34777 * 128.07846 * 106.80707 * 18 11 10 20 20 O 1.21286 * 120.00236 * 179.67826 * 19 18 11 21 21 C 1.50699 * 119.99888 * 359.67308 * 19 18 11 22 22 H 1.09002 * 115.55319 * 325.58696 * 21 19 18 23 23 C 1.53003 * 117.49801 * 111.25381 * 21 19 18 24 24 C 1.53005 * 117.49915 * 179.91347 * 21 19 18 25 25 H 1.08989 * 117.49724 * 0.02562 * 24 21 19 26 26 C 1.50704 * 117.49407 * 145.02464 * 24 21 19 27 27 O 1.20820 * 120.00516 * 0.02562 * 26 24 21 28 28 O 1.34227 * 119.99300 * 180.02562 * 26 24 21 29 29 H 0.97005 * 119.99676 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.75074 * 252.37134 * 10 9 7 31 31 H 1.08999 * 109.75444 * 13.11222 * 10 9 7 32 32 H 1.08992 * 110.36795 * 207.57414 * 13 11 10 33 33 H 1.09008 * 110.36151 * 329.78287 * 13 11 10 34 34 H 1.09000 * 110.41852 * 241.06856 * 14 13 11 35 35 H 1.08999 * 110.20925 * 118.82190 * 14 13 11 36 36 H 1.08997 * 109.74831 * 107.61974 * 17 9 7 37 37 H 1.09005 * 109.78674 * 346.91751 * 17 9 7 38 38 H 1.08994 * 117.49785 * 214.98093 * 23 21 19 39 39 H 1.09001 * 117.49935 * 0.02562 * 23 21 19 40 40 H 0.96709 * 116.99567 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0619 -1.2186 0.2445 9 7 1.3615 -2.3672 -0.3118 10 6 0.1552 -2.3536 -1.1548 11 6 0.3153 -3.4464 -2.2350 12 1 -0.5289 -3.4749 -2.9240 13 6 1.6629 -3.2090 -2.9533 14 6 2.6944 -4.0007 -2.1332 15 6 1.8819 -4.6494 -0.9898 16 1 2.2714 -5.6247 -0.6980 17 6 1.8557 -3.6597 0.1891 18 7 0.5003 -4.7335 -1.5219 19 6 -0.3795 -5.7463 -1.3929 20 8 -0.0696 -6.7441 -0.7770 21 6 -1.7484 -5.6389 -2.0139 22 1 -2.1837 -4.6396 -2.0224 23 6 -2.0606 -6.5555 -3.1985 24 6 -2.7007 -6.8229 -1.8339 25 1 -2.3372 -7.6792 -1.2660 26 6 -4.1688 -6.5181 -1.6825 27 8 -4.5538 -5.3731 -1.7063 28 8 -5.0487 -7.5188 -1.5212 29 1 -0.4850 0.8401 0.0004 30 1 -0.7231 -2.5626 -0.5444 31 1 0.0500 -1.3790 -1.6315 32 1 1.6211 -3.5896 -3.9737 33 1 1.9100 -2.1473 -2.9550 34 1 3.4527 -3.3310 -1.7276 35 1 3.1577 -4.7692 -2.7519 36 1 1.1899 -4.0318 0.9677 37 1 2.8616 -3.5392 0.5914 38 1 -2.7016 -6.1595 -3.9861 39 1 -1.2761 -7.2366 -3.5284 40 1 -5.9796 -7.2740 -1.4278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073443.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:21 Heat of formation + Delta-G solvation = -59.664387 kcal Electronic energy + Delta-G solvation = -24599.549730 eV Core-core repulsion = 20995.236043 eV Total energy + Delta-G solvation = -3604.313687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.75729 -40.02601 -38.30686 -36.50059 -35.63318 -34.12775 -31.51891 -30.83650 -30.35902 -26.59710 -25.83363 -24.26545 -23.64840 -22.66829 -21.13226 -20.43188 -19.74472 -18.63836 -18.03565 -17.59984 -16.63393 -15.89020 -15.83355 -15.37298 -15.14922 -14.60242 -14.53274 -13.88299 -13.47337 -13.35099 -12.92664 -12.88102 -12.50124 -12.45229 -12.00159 -11.96208 -11.74165 -11.62811 -11.17098 -10.98252 -10.88076 -10.76074 -10.67192 -10.55636 -10.49888 -10.30750 -10.04175 -9.83817 -9.69303 -9.52481 -8.59122 -8.26212 -6.74802 -5.84270 -3.26622 1.90831 2.57488 2.79949 3.32899 3.36149 3.41682 3.43072 3.71781 4.41376 4.43012 4.58079 4.69854 5.04908 5.11460 5.15710 5.30070 5.33652 5.36879 5.41515 5.56853 5.73885 5.74537 5.81461 5.84771 6.10093 6.13251 6.26669 6.31688 6.36542 6.38877 6.54312 6.70458 6.81692 6.94222 7.19477 7.48915 7.71168 7.75038 8.04642 8.32531 8.47667 9.12378 9.74753 10.31342 11.23994 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.004580 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.956707 B = 6111.582382 C = 6886.591849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.070 0.930 9 N -0.588 5.588 10 C 0.170 3.830 11 C 0.094 3.906 12 H 0.087 0.913 13 C -0.110 4.110 14 C -0.111 4.111 15 C 0.116 3.884 16 H 0.090 0.910 17 C 0.137 3.863 18 N -0.598 5.598 19 C 0.561 3.439 20 O -0.558 6.558 21 C -0.145 4.145 22 H 0.140 0.860 23 C -0.117 4.117 24 C -0.140 4.140 25 H 0.148 0.852 26 C 0.511 3.489 27 O -0.508 6.508 28 O -0.512 6.512 29 H 0.254 0.746 30 H 0.024 0.976 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.021 0.979 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 -11.797 -8.368 14.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.311 5.311 10 C 0.044 3.956 11 C -0.010 4.010 12 H 0.105 0.895 13 C -0.149 4.149 14 C -0.149 4.149 15 C 0.012 3.988 16 H 0.108 0.892 17 C 0.010 3.990 18 N -0.329 5.329 19 C 0.349 3.651 20 O -0.438 6.438 21 C -0.166 4.166 22 H 0.158 0.842 23 C -0.154 4.154 24 C -0.160 4.160 25 H 0.166 0.834 26 C 0.353 3.647 27 O -0.396 6.396 28 O -0.323 6.323 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -3.285 -12.011 -8.051 14.828 hybrid contribution -0.443 1.170 0.267 1.279 sum -3.728 -10.840 -7.784 13.857 Atomic orbital electron populations 1.70014 1.05203 1.25494 1.54363 1.25019 0.95327 0.98327 1.00963 0.86206 0.79246 0.83918 0.77303 1.20267 1.21556 1.21782 1.19234 0.92137 0.84181 1.42364 0.91265 1.44065 1.30172 1.01153 1.55693 1.21461 0.88604 0.95970 0.89581 1.23560 0.97764 0.84035 0.95668 0.89506 1.22192 0.94051 1.01922 0.96719 1.22204 0.98034 0.98556 0.96121 1.22936 0.80854 0.99163 0.95890 0.89188 1.21473 0.98318 0.86754 0.92486 1.49087 1.14569 1.16758 1.52479 1.18848 0.84317 0.81796 0.80156 1.90660 1.78586 1.30828 1.43721 1.22316 0.94112 0.97686 1.02536 0.84218 1.23076 1.01959 1.00745 0.89647 1.21606 0.86800 1.03073 1.04507 0.83386 1.22247 0.88243 0.82453 0.71784 1.90763 1.80240 1.22481 1.46081 1.84501 1.22528 1.40848 1.84467 0.93548 0.95758 0.88512 0.93037 0.89432 0.89854 0.92907 0.96160 0.91801 0.87024 0.86604 0.72992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.35 11.02 55.49 0.61 -24.74 16 2 C 0.00 0.05 4.99 -17.43 -0.09 -0.03 16 3 Si 0.90 20.87 29.58 -169.99 -5.03 15.84 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.42 9.66 -15.06 -0.15 -6.57 16 8 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 9 N -0.59 -13.81 2.29 -170.67 -0.39 -14.20 16 10 C 0.17 3.82 4.63 -2.90 -0.01 3.81 16 11 C 0.09 1.65 3.94 -65.34 -0.26 1.39 16 12 H 0.09 1.33 7.21 -51.93 -0.37 0.96 16 13 C -0.11 -1.78 6.16 -25.54 -0.16 -1.94 16 14 C -0.11 -1.76 6.15 -25.54 -0.16 -1.91 16 15 C 0.12 2.05 4.12 -65.64 -0.27 1.78 16 16 H 0.09 1.55 7.92 -51.93 -0.41 1.14 16 17 C 0.14 2.84 6.01 -3.19 -0.02 2.82 16 18 N -0.60 -10.67 2.74 -152.67 -0.42 -11.09 16 19 C 0.56 9.89 7.71 -10.99 -0.08 9.81 16 20 O -0.56 -11.16 16.57 5.55 0.09 -11.07 16 21 C -0.15 -2.10 4.87 -91.77 -0.45 -2.54 16 22 H 0.14 2.14 7.14 -51.93 -0.37 1.77 16 23 C -0.12 -1.24 9.94 -26.69 -0.27 -1.51 16 24 C -0.14 -1.77 5.82 -91.73 -0.53 -2.30 16 25 H 0.15 1.88 7.67 -51.94 -0.40 1.48 16 26 C 0.51 6.44 8.11 36.01 0.29 6.73 16 27 O -0.51 -7.99 17.02 -18.75 -0.32 -8.31 16 28 O -0.51 -4.84 13.42 -39.25 -0.53 -5.37 16 29 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 2.38 6.20 -51.93 -0.32 2.06 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.56 7.85 -51.92 -0.41 1.15 16 34 H 0.08 1.39 7.84 -51.93 -0.41 0.98 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 38 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.41 2.04 9.10 45.56 0.41 2.45 16 LS Contribution 329.98 15.07 4.97 4.97 Total: -1.00 -32.29 329.98 -7.93 -40.22 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.77 Total: 4.22 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -2.15 Total: 9.53 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.20 Total: -50.03 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.75 Total: -24.75 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.29 -7.93 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073443.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.443 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds