Wall clock time and date at job start Fri Apr 10 2020 17:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99934 * 2 1 4 4 H 1.48503 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47265 * 299.99966 * 3 2 1 6 6 H 1.48501 * 109.46931 * 60.00140 * 3 2 1 7 7 C 1.38811 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99720 * 195.18791 * 7 2 1 9 9 N 1.36937 * 120.00375 * 15.19310 * 7 2 1 10 10 C 1.47166 * 120.70587 * 25.33786 * 9 7 2 11 11 C 1.54488 * 108.00239 * 132.63943 * 10 9 7 12 12 H 1.08998 * 112.35071 * 181.98643 * 11 10 9 13 13 C 1.54544 * 107.85842 * 306.76948 * 11 10 9 14 14 C 1.53730 * 104.95598 * 88.85524 * 13 11 10 15 15 C 1.54545 * 104.95624 * 0.02562 * 14 13 11 16 16 H 1.08999 * 112.68470 * 146.56283 * 15 14 13 17 17 C 1.47161 * 120.71225 * 205.32337 * 9 7 2 18 18 N 1.48308 * 106.89526 * 58.49150 * 11 10 9 19 19 C 1.34777 * 128.07846 * 106.80707 * 18 11 10 20 20 O 1.21286 * 120.00236 * 179.67826 * 19 18 11 21 21 C 1.50699 * 119.99888 * 359.67308 * 19 18 11 22 22 H 1.09002 * 115.55319 * 325.58696 * 21 19 18 23 23 C 1.53003 * 117.49801 * 111.25381 * 21 19 18 24 24 C 1.53005 * 117.49915 * 179.91347 * 21 19 18 25 25 H 1.08989 * 117.49724 * 0.02562 * 24 21 19 26 26 C 1.50704 * 117.49407 * 145.02464 * 24 21 19 27 27 O 1.20820 * 120.00516 * 0.02562 * 26 24 21 28 28 O 1.34227 * 119.99300 * 180.02562 * 26 24 21 29 29 H 0.97005 * 119.99676 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.75074 * 252.37134 * 10 9 7 31 31 H 1.08999 * 109.75444 * 13.11222 * 10 9 7 32 32 H 1.08992 * 110.36795 * 207.57414 * 13 11 10 33 33 H 1.09008 * 110.36151 * 329.78287 * 13 11 10 34 34 H 1.09000 * 110.41852 * 241.06856 * 14 13 11 35 35 H 1.08999 * 110.20925 * 118.82190 * 14 13 11 36 36 H 1.08997 * 109.74831 * 107.61974 * 17 9 7 37 37 H 1.09005 * 109.78674 * 346.91751 * 17 9 7 38 38 H 1.08994 * 117.49785 * 214.98093 * 23 21 19 39 39 H 1.09001 * 117.49935 * 0.02562 * 23 21 19 40 40 H 0.96709 * 116.99567 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0619 -1.2186 0.2445 9 7 1.3615 -2.3672 -0.3118 10 6 0.1552 -2.3536 -1.1548 11 6 0.3153 -3.4464 -2.2350 12 1 -0.5289 -3.4749 -2.9240 13 6 1.6629 -3.2090 -2.9533 14 6 2.6944 -4.0007 -2.1332 15 6 1.8819 -4.6494 -0.9898 16 1 2.2714 -5.6247 -0.6980 17 6 1.8557 -3.6597 0.1891 18 7 0.5003 -4.7335 -1.5219 19 6 -0.3795 -5.7463 -1.3929 20 8 -0.0696 -6.7441 -0.7770 21 6 -1.7484 -5.6389 -2.0139 22 1 -2.1837 -4.6396 -2.0224 23 6 -2.0606 -6.5555 -3.1985 24 6 -2.7007 -6.8229 -1.8339 25 1 -2.3372 -7.6792 -1.2660 26 6 -4.1688 -6.5181 -1.6825 27 8 -4.5538 -5.3731 -1.7063 28 8 -5.0487 -7.5188 -1.5212 29 1 -0.4850 0.8401 0.0004 30 1 -0.7231 -2.5626 -0.5444 31 1 0.0500 -1.3790 -1.6315 32 1 1.6211 -3.5896 -3.9737 33 1 1.9100 -2.1473 -2.9550 34 1 3.4527 -3.3310 -1.7276 35 1 3.1577 -4.7692 -2.7519 36 1 1.1899 -4.0318 0.9677 37 1 2.8616 -3.5392 0.5914 38 1 -2.7016 -6.1595 -3.9861 39 1 -1.2761 -7.2366 -3.5284 40 1 -5.9796 -7.2740 -1.4278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601073443.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:21 Heat of formation + Delta-G solvation = -80.605463 kcal Electronic energy + Delta-G solvation = -24600.457803 eV Core-core repulsion = 20995.236043 eV Total energy + Delta-G solvation = -3605.221760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.92869 -41.29046 -39.64364 -37.51491 -36.72410 -35.94483 -33.20969 -32.30305 -32.05130 -28.24001 -27.09158 -25.53111 -25.20005 -24.24295 -22.30713 -21.77851 -21.04463 -19.81852 -19.53471 -18.76450 -18.03723 -17.41988 -16.93028 -16.75982 -16.51300 -16.27258 -15.92413 -15.27504 -14.99068 -14.90607 -14.50446 -14.25066 -13.83199 -13.59342 -13.47251 -13.38089 -13.17054 -12.86725 -12.72380 -12.66386 -12.24624 -12.10194 -12.07916 -11.94507 -11.80678 -11.75499 -11.67952 -11.53015 -11.11496 -10.92194 -10.59568 -9.82869 -8.68273 -7.85421 -5.31291 0.91742 1.38473 1.48699 1.51122 1.60715 1.71514 2.15498 2.51923 2.65222 3.30350 3.37120 3.39091 3.52511 3.70048 3.87105 3.95659 4.09078 4.15036 4.20403 4.29690 4.39536 4.56757 4.60294 4.64126 4.79411 4.82197 4.87515 4.90446 5.06693 5.09047 5.16983 5.30193 5.39012 5.51772 5.57649 5.63819 5.67275 6.34000 6.63338 6.93052 7.08128 7.12554 7.80576 8.34145 9.20637 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.004580 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.956707 B = 6111.582382 C = 6886.591849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.050 4.050 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.300 1.300 7 C -0.252 4.252 8 H 0.075 0.925 9 N -0.598 5.598 10 C 0.179 3.821 11 C 0.107 3.893 12 H 0.113 0.887 13 C -0.104 4.104 14 C -0.102 4.102 15 C 0.119 3.881 16 H 0.100 0.900 17 C 0.135 3.865 18 N -0.602 5.602 19 C 0.559 3.441 20 O -0.585 6.585 21 C -0.170 4.170 22 H 0.127 0.873 23 C -0.078 4.078 24 C -0.144 4.144 25 H 0.147 0.853 26 C 0.519 3.481 27 O -0.546 6.546 28 O -0.501 6.501 29 H 0.249 0.751 30 H -0.019 1.019 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.084 0.916 36 H -0.010 1.010 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.864 -13.248 -10.557 17.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.244 4.244 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.228 1.228 7 C -0.382 4.382 8 H 0.092 0.908 9 N -0.322 5.322 10 C 0.052 3.948 11 C 0.003 3.997 12 H 0.131 0.869 13 C -0.143 4.143 14 C -0.140 4.140 15 C 0.015 3.985 16 H 0.118 0.882 17 C 0.008 3.992 18 N -0.333 5.333 19 C 0.349 3.651 20 O -0.467 6.467 21 C -0.191 4.191 22 H 0.145 0.855 23 C -0.115 4.115 24 C -0.164 4.164 25 H 0.165 0.835 26 C 0.362 3.638 27 O -0.437 6.437 28 O -0.315 6.315 29 H 0.058 0.942 30 H -0.001 1.001 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.008 0.992 37 H 0.092 0.908 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -2.548 -13.504 -10.248 17.142 hybrid contribution -0.739 1.529 1.066 2.005 sum -3.287 -11.975 -9.182 15.444 Atomic orbital electron populations 1.70193 1.06721 1.25705 1.56208 1.25736 0.95948 1.01314 1.01452 0.85199 0.78734 0.79931 0.76523 1.18767 1.21525 1.22805 1.19573 0.92485 0.85048 1.41071 0.90764 1.44272 1.30144 1.01606 1.56157 1.21225 0.86771 0.96699 0.90102 1.23353 1.00044 0.82055 0.94242 0.86931 1.22157 0.92614 1.00999 0.98485 1.22160 0.97397 0.98975 0.95446 1.22844 0.81655 0.98639 0.95376 0.88235 1.21568 0.97827 0.86431 0.93367 1.49160 1.14721 1.16809 1.52576 1.19375 0.85111 0.81179 0.79445 1.90638 1.79326 1.31890 1.44799 1.22142 0.92641 0.98069 1.06223 0.85534 1.23291 1.01389 0.98205 0.88624 1.21652 0.86627 1.01709 1.06376 0.83504 1.22203 0.88589 0.82148 0.70820 1.90761 1.80863 1.23982 1.48065 1.84453 1.23890 1.39590 1.83571 0.94185 1.00066 0.91028 0.89351 0.91410 0.90756 0.89713 0.99216 0.90838 0.84619 0.84819 0.70570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.73 11.02 21.65 0.24 -54.49 16 2 C -0.05 -2.68 4.99 84.86 0.42 -2.25 16 3 Si 0.97 43.51 29.58 68.60 2.03 45.54 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 7 C -0.25 -13.15 9.66 84.03 0.81 -12.34 16 8 H 0.07 3.74 7.86 -2.91 -0.02 3.71 16 9 N -0.60 -28.83 2.29 -693.88 -1.59 -30.42 16 10 C 0.18 8.31 4.63 86.76 0.40 8.71 16 11 C 0.11 3.68 3.94 45.67 0.18 3.86 16 12 H 0.11 3.29 7.21 -2.39 -0.02 3.27 16 13 C -0.10 -3.11 6.16 31.37 0.19 -2.92 16 14 C -0.10 -2.96 6.15 31.37 0.19 -2.76 16 15 C 0.12 4.10 4.12 45.49 0.19 4.28 16 16 H 0.10 3.27 7.92 -2.39 -0.02 3.25 16 17 C 0.13 5.68 6.01 86.57 0.52 6.20 16 18 N -0.60 -20.97 2.74 -755.31 -2.07 -23.04 16 19 C 0.56 19.27 7.71 87.66 0.68 19.95 16 20 O -0.58 -22.99 16.57 -3.05 -0.05 -23.04 16 21 C -0.17 -4.70 4.87 -11.54 -0.06 -4.76 16 22 H 0.13 3.89 7.14 -2.39 -0.02 3.87 16 23 C -0.08 -1.41 9.94 30.62 0.30 -1.10 16 24 C -0.14 -3.39 5.82 -11.51 -0.07 -3.46 16 25 H 0.15 3.53 7.67 -2.39 -0.02 3.51 16 26 C 0.52 12.38 8.11 71.24 0.58 12.95 16 27 O -0.55 -16.94 17.02 21.98 0.37 -16.57 16 28 O -0.50 -8.43 13.42 -51.39 -0.69 -9.12 16 29 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 30 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 31 H 0.07 3.69 6.20 -2.39 -0.01 3.67 16 32 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 2.32 7.85 -2.38 -0.02 2.31 16 34 H 0.07 2.32 7.84 -2.39 -0.02 2.30 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.07 2.89 7.96 -2.38 -0.02 2.88 16 38 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.43 3.33 9.10 -74.05 -0.67 2.66 16 Total: -1.00 -72.50 329.98 2.98 -69.51 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.39 Total: 15.27 kcal Atomic # 6 Polarization: 22.01 SS G_CDS: 4.35 Total: 26.36 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -3.42 Total: -107.95 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -0.37 Total: -48.73 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -72.50 2.98 -69.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073443.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.094 kcal (2) G-P(sol) polarization free energy of solvation -72.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds