Wall clock time and date at job start Fri Apr 10 2020 17:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48502 * 109.46980 * 355.31954 * 3 2 1 5 5 H 1.48501 * 109.46832 * 115.31660 * 3 2 1 6 6 H 1.48495 * 109.47214 * 235.31903 * 3 2 1 7 7 C 1.38808 * 119.99758 * 180.27956 * 2 1 3 8 8 H 1.08004 * 120.00239 * 352.36434 * 7 2 1 9 9 N 1.36944 * 119.99887 * 172.36849 * 7 2 1 10 10 C 1.47058 * 136.05788 * 6.52764 * 9 7 2 11 11 C 1.53749 * 87.89054 * 152.96179 * 10 9 7 12 12 O 1.42899 * 114.39541 * 272.67544 * 11 10 9 13 13 C 1.53007 * 114.08694 * 139.77849 * 11 10 9 14 14 N 1.46494 * 109.46928 * 86.56529 * 13 11 10 15 15 C 1.34781 * 119.99862 * 179.97438 * 14 13 11 16 16 O 1.21280 * 119.99746 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00044 * 179.97438 * 15 14 13 18 18 O 1.42899 * 109.46904 * 180.02562 * 17 15 14 19 19 C 1.42900 * 113.99773 * 180.02562 * 18 17 15 20 20 C 1.53001 * 109.47324 * 179.97438 * 19 18 17 21 21 F 1.39904 * 109.47267 * 300.00399 * 20 19 18 22 22 F 1.39906 * 109.46833 * 59.99768 * 20 19 18 23 23 C 1.47066 * 136.05683 * 186.89762 * 9 7 2 24 24 H 0.96999 * 119.99710 * 185.10483 * 1 2 3 25 25 H 1.09001 * 113.46851 * 267.69866 * 10 9 7 26 26 H 1.09001 * 113.47037 * 38.13172 * 10 9 7 27 27 H 0.96703 * 113.99848 * 273.58159 * 12 11 10 28 28 H 1.09001 * 109.46510 * 206.56068 * 13 11 10 29 29 H 1.08998 * 109.47097 * 326.55971 * 13 11 10 30 30 H 0.96997 * 120.00500 * 359.97438 * 14 13 11 31 31 H 1.09004 * 109.46965 * 299.99944 * 17 15 14 32 32 H 1.08998 * 109.47319 * 60.00120 * 17 15 14 33 33 H 1.09000 * 109.47348 * 299.99432 * 19 18 17 34 34 H 1.09000 * 109.47309 * 59.99935 * 19 18 17 35 35 H 1.08995 * 109.47872 * 179.97438 * 20 19 18 36 36 H 1.09007 * 113.46852 * 321.86298 * 23 9 7 37 37 H 1.08998 * 113.47074 * 92.24182 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2893 2.7441 -0.1142 5 1 3.0162 1.7470 1.2656 6 1 3.1876 1.6481 -1.1513 7 6 2.0102 -1.2021 -0.0059 8 1 1.4774 -2.1339 0.1139 9 7 3.3705 -1.2066 -0.1634 10 6 4.4319 -0.1910 -0.2326 11 6 5.4053 -1.2538 0.3029 12 8 5.4631 -1.3365 1.7283 13 6 6.7836 -1.2293 -0.3611 14 7 7.6440 -0.2695 0.3351 15 6 8.9127 -0.0789 -0.0777 16 8 9.3420 -0.7017 -1.0258 17 6 9.7977 0.9089 0.6380 18 8 11.0849 0.9316 0.0179 19 6 12.0059 1.8407 0.6240 20 6 13.3433 1.7813 -0.1168 21 9 13.8572 0.4819 -0.0483 22 9 13.1506 2.1365 -1.4563 23 6 4.4122 -2.2289 -0.3444 24 1 -0.4850 -0.8367 0.0747 25 1 4.6580 0.1320 -1.2487 26 1 4.2791 0.6438 0.4515 27 1 6.0897 -0.7211 2.1329 28 1 7.2300 -2.2223 -0.3082 29 1 6.6788 -0.9331 -1.4048 30 1 7.3006 0.2288 1.0931 31 1 9.3513 1.9019 0.5844 32 1 9.9020 0.6133 1.6819 33 1 11.6055 2.8531 0.5708 34 1 12.1564 1.5638 1.6674 35 1 14.0458 2.4750 0.3451 36 1 4.2426 -3.1304 0.2445 37 1 4.6324 -2.4440 -1.3900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672100012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:56 Heat of formation + Delta-G solvation = -155.551416 kcal Electronic energy + Delta-G solvation = -23561.526032 eV Core-core repulsion = 19398.824842 eV Total energy + Delta-G solvation = -4162.701190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.23769 -47.27646 -40.26798 -39.23834 -37.91886 -35.35124 -34.24283 -32.32144 -31.11724 -29.48232 -27.75503 -25.58410 -25.51444 -23.39588 -21.61052 -20.91918 -19.69643 -18.41695 -18.19889 -17.87420 -17.53993 -16.94653 -16.63739 -16.56311 -16.14096 -15.63058 -15.17638 -14.92897 -14.47323 -14.15791 -13.98865 -13.80539 -13.62702 -13.38076 -13.23891 -13.18393 -12.75104 -12.63902 -12.42676 -12.07338 -11.67050 -11.40954 -11.06081 -10.59035 -10.38496 -10.37587 -10.14371 -9.96468 -9.34588 -9.24297 -8.98520 -8.89916 -7.19610 -6.34727 -3.25123 2.31339 2.39356 3.20181 3.32617 3.38098 3.53745 3.59575 3.73949 3.99562 4.17172 4.33870 4.51176 4.55408 4.56658 4.63765 4.67080 4.70824 4.74588 4.92466 4.98260 5.44981 5.49233 5.76906 5.97749 6.07072 6.08903 6.20042 6.29644 6.33388 6.48260 7.03785 7.18871 7.77851 7.99590 8.21187 8.94839 9.46356 10.30315 11.18207 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.031547 B = 0.002887 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.352709 B = 9696.795936 C =10132.876784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.027 4.027 3 Si 1.074 2.926 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.300 4.300 8 H 0.084 0.916 9 N -0.618 5.618 10 C 0.077 3.923 11 C 0.070 3.930 12 O -0.518 6.518 13 C 0.108 3.892 14 N -0.726 5.726 15 C 0.514 3.486 16 O -0.514 6.514 17 C 0.043 3.957 18 O -0.351 6.351 19 C 0.006 3.994 20 C 0.273 3.727 21 F -0.198 7.198 22 F -0.198 7.198 23 C 0.139 3.861 24 H 0.261 0.739 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.362 0.638 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.397 0.603 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.057 0.943 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.777 6.420 5.005 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.225 4.225 3 Si 0.907 3.093 4 H -0.222 1.222 5 H -0.223 1.223 6 H -0.215 1.215 7 C -0.426 4.426 8 H 0.102 0.898 9 N -0.345 5.345 10 C -0.049 4.049 11 C 0.027 3.973 12 O -0.321 6.321 13 C -0.017 4.017 14 N -0.382 5.382 15 C 0.299 3.701 16 O -0.387 6.387 17 C -0.036 4.036 18 O -0.269 6.269 19 C -0.072 4.072 20 C 0.219 3.781 21 F -0.180 7.180 22 F -0.179 7.179 23 C 0.012 3.988 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.208 0.792 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.232 0.768 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.143 0.857 36 H 0.076 0.924 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 26.186 6.975 3.967 27.388 hybrid contribution 0.323 -0.861 0.712 1.163 sum 26.509 6.115 4.679 27.605 Atomic orbital electron populations 1.70915 1.05258 1.29491 1.52013 1.25740 0.96491 1.00960 0.99315 0.83648 0.73821 0.75991 0.75857 1.22194 1.22318 1.21488 1.20125 0.78193 0.95902 1.48392 0.89805 1.45704 1.02150 1.01415 1.85260 1.23505 0.88459 0.94236 0.98731 1.23329 0.90950 1.01257 0.81725 1.86697 1.65216 1.62760 1.17447 1.21982 0.89340 0.93063 0.97295 1.45815 1.12272 1.44508 1.35617 1.20092 0.81987 0.83445 0.84608 1.90772 1.73435 1.47356 1.27184 1.22283 0.84700 0.99579 0.97076 1.88102 1.21136 1.61906 1.55735 1.23777 0.89677 0.95832 0.97910 1.21987 0.94658 0.81487 0.79981 1.93030 1.88178 1.40549 1.96208 1.93034 1.96211 1.91641 1.37038 1.22340 0.85636 0.93743 0.97061 0.92870 0.92790 0.92690 0.79211 0.90288 0.89731 0.76781 0.89601 0.89670 0.89800 0.89849 0.85707 0.92423 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.64 13.70 55.49 0.76 -28.88 16 2 C -0.03 -0.79 5.50 -17.43 -0.10 -0.89 16 3 Si 1.07 26.51 25.13 -169.99 -4.27 22.24 16 4 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 5 H -0.29 -6.80 6.64 56.52 0.38 -6.42 16 6 H -0.29 -6.56 6.13 56.52 0.35 -6.22 16 7 C -0.30 -8.74 11.08 -15.06 -0.17 -8.91 16 8 H 0.08 2.58 8.05 -52.48 -0.42 2.15 16 9 N -0.62 -15.20 3.69 -184.62 -0.68 -15.88 16 10 C 0.08 1.55 5.13 -8.39 -0.04 1.50 16 11 C 0.07 1.15 1.74 -89.97 -0.16 0.99 16 12 O -0.52 -8.31 13.56 -35.23 -0.48 -8.79 16 13 C 0.11 1.43 5.43 -4.04 -0.02 1.41 16 14 N -0.73 -7.67 5.34 -60.29 -0.32 -7.99 16 15 C 0.51 6.18 7.91 -10.98 -0.09 6.09 16 16 O -0.51 -8.78 16.50 -14.35 -0.24 -9.02 16 17 C 0.04 0.34 6.42 36.01 0.23 0.57 16 18 O -0.35 -3.71 9.76 -55.14 -0.54 -4.25 16 19 C 0.01 0.03 6.16 37.16 0.23 0.26 16 20 C 0.27 1.75 5.63 37.16 0.21 1.96 16 21 F -0.20 -1.96 17.28 2.25 0.04 -1.92 16 22 F -0.20 -1.98 17.28 2.25 0.04 -1.94 16 23 C 0.14 2.72 8.10 -8.52 -0.07 2.65 16 24 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 25 H 0.05 1.06 7.50 -51.93 -0.39 0.67 16 26 H 0.06 1.14 4.67 -51.93 -0.24 0.89 16 27 H 0.36 3.85 7.21 45.56 0.33 4.18 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.18 7.89 -51.93 -0.41 0.77 16 30 H 0.40 2.98 6.95 -40.82 -0.28 2.69 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.13 0.19 8.14 -51.93 -0.42 -0.24 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 321.32 15.07 4.84 4.84 Total: -1.00 -40.20 321.32 -4.85 -45.05 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -4.03 Total: 0.89 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 0.03 Total: 5.64 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.24 Total: -52.75 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -1.25 Total: -22.05 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.08 Total: -3.86 kcal Atomic # 14 Polarization: 26.51 SS G_CDS: -4.27 Total: 22.24 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -40.20 -4.85 -45.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672100012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.498 kcal (2) G-P(sol) polarization free energy of solvation -40.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds