Wall clock time and date at job start Fri Apr 10 2020 17:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48502 * 109.46980 * 355.31954 * 3 2 1 5 5 H 1.48501 * 109.46832 * 115.31660 * 3 2 1 6 6 H 1.48495 * 109.47214 * 235.31903 * 3 2 1 7 7 C 1.38808 * 119.99758 * 180.27956 * 2 1 3 8 8 H 1.08004 * 120.00239 * 352.36434 * 7 2 1 9 9 N 1.36944 * 119.99887 * 172.36849 * 7 2 1 10 10 C 1.47058 * 136.05788 * 6.52764 * 9 7 2 11 11 C 1.53749 * 87.89054 * 152.96179 * 10 9 7 12 12 O 1.42899 * 114.39541 * 272.67544 * 11 10 9 13 13 C 1.53007 * 114.08694 * 139.77849 * 11 10 9 14 14 N 1.46494 * 109.46928 * 86.56529 * 13 11 10 15 15 C 1.34781 * 119.99862 * 179.97438 * 14 13 11 16 16 O 1.21280 * 119.99746 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00044 * 179.97438 * 15 14 13 18 18 O 1.42899 * 109.46904 * 180.02562 * 17 15 14 19 19 C 1.42900 * 113.99773 * 180.02562 * 18 17 15 20 20 C 1.53001 * 109.47324 * 179.97438 * 19 18 17 21 21 F 1.39904 * 109.47267 * 300.00399 * 20 19 18 22 22 F 1.39906 * 109.46833 * 59.99768 * 20 19 18 23 23 C 1.47066 * 136.05683 * 186.89762 * 9 7 2 24 24 H 0.96999 * 119.99710 * 185.10483 * 1 2 3 25 25 H 1.09001 * 113.46851 * 267.69866 * 10 9 7 26 26 H 1.09001 * 113.47037 * 38.13172 * 10 9 7 27 27 H 0.96703 * 113.99848 * 273.58159 * 12 11 10 28 28 H 1.09001 * 109.46510 * 206.56068 * 13 11 10 29 29 H 1.08998 * 109.47097 * 326.55971 * 13 11 10 30 30 H 0.96997 * 120.00500 * 359.97438 * 14 13 11 31 31 H 1.09004 * 109.46965 * 299.99944 * 17 15 14 32 32 H 1.08998 * 109.47319 * 60.00120 * 17 15 14 33 33 H 1.09000 * 109.47348 * 299.99432 * 19 18 17 34 34 H 1.09000 * 109.47309 * 59.99935 * 19 18 17 35 35 H 1.08995 * 109.47872 * 179.97438 * 20 19 18 36 36 H 1.09007 * 113.46852 * 321.86298 * 23 9 7 37 37 H 1.08998 * 113.47074 * 92.24182 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2893 2.7441 -0.1142 5 1 3.0162 1.7470 1.2656 6 1 3.1876 1.6481 -1.1513 7 6 2.0102 -1.2021 -0.0059 8 1 1.4774 -2.1339 0.1139 9 7 3.3705 -1.2066 -0.1634 10 6 4.4319 -0.1910 -0.2326 11 6 5.4053 -1.2538 0.3029 12 8 5.4631 -1.3365 1.7283 13 6 6.7836 -1.2293 -0.3611 14 7 7.6440 -0.2695 0.3351 15 6 8.9127 -0.0789 -0.0777 16 8 9.3420 -0.7017 -1.0258 17 6 9.7977 0.9089 0.6380 18 8 11.0849 0.9316 0.0179 19 6 12.0059 1.8407 0.6240 20 6 13.3433 1.7813 -0.1168 21 9 13.8572 0.4819 -0.0483 22 9 13.1506 2.1365 -1.4563 23 6 4.4122 -2.2289 -0.3444 24 1 -0.4850 -0.8367 0.0747 25 1 4.6580 0.1320 -1.2487 26 1 4.2791 0.6438 0.4515 27 1 6.0897 -0.7211 2.1329 28 1 7.2300 -2.2223 -0.3082 29 1 6.6788 -0.9331 -1.4048 30 1 7.3006 0.2288 1.0931 31 1 9.3513 1.9019 0.5844 32 1 9.9020 0.6133 1.6819 33 1 11.6055 2.8531 0.5708 34 1 12.1564 1.5638 1.6674 35 1 14.0458 2.4750 0.3451 36 1 4.2426 -3.1304 0.2445 37 1 4.6324 -2.4440 -1.3900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672100012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:56 Heat of formation + Delta-G solvation = -191.071403 kcal Electronic energy + Delta-G solvation = -23563.066294 eV Core-core repulsion = 19398.824842 eV Total energy + Delta-G solvation = -4164.241452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.79898 -47.87477 -41.40853 -40.41309 -38.58880 -36.78233 -35.32562 -34.44177 -31.69348 -30.69417 -28.92783 -27.17645 -26.80989 -23.81299 -23.30367 -21.84005 -21.24567 -19.76439 -19.04365 -18.77466 -18.39377 -17.93550 -17.47347 -17.27878 -17.14491 -16.51523 -16.39426 -16.00460 -15.75816 -15.61881 -15.16743 -14.89591 -14.81078 -14.56354 -14.25248 -14.13789 -13.86616 -13.60634 -13.36417 -13.06107 -12.96494 -12.83880 -12.38171 -11.91780 -11.81560 -11.77419 -11.33930 -11.03371 -10.93063 -10.84368 -10.63520 -10.20475 -9.22915 -8.68412 -5.49126 1.35139 1.48538 1.54134 1.64747 1.68123 2.54818 2.69221 2.86979 2.95104 3.06958 3.16956 3.29512 3.44889 3.64624 3.72697 3.75885 4.16209 4.21753 4.25290 4.32460 4.38600 4.47820 4.56720 4.58964 4.63641 4.72977 4.77764 5.01719 5.14284 5.23920 5.86808 5.91982 6.42302 6.66967 6.77058 7.16802 7.29428 8.22305 8.87465 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.031547 B = 0.002887 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.352709 B = 9696.795936 C =10132.876784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.090 4.090 3 Si 1.114 2.886 4 H -0.306 1.306 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.291 4.291 8 H 0.046 0.954 9 N -0.655 5.655 10 C 0.069 3.931 11 C 0.109 3.891 12 O -0.535 6.535 13 C 0.121 3.879 14 N -0.713 5.713 15 C 0.510 3.490 16 O -0.574 6.574 17 C 0.047 3.953 18 O -0.400 6.400 19 C 0.001 3.999 20 C 0.254 3.746 21 F -0.224 7.224 22 F -0.224 7.224 23 C 0.126 3.874 24 H 0.244 0.756 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.388 0.612 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.416 0.584 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.179 0.821 36 H 0.049 0.951 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.900 8.561 6.405 31.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.281 4.281 3 Si 0.939 3.061 4 H -0.234 1.234 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.418 4.418 8 H 0.063 0.937 9 N -0.383 5.383 10 C -0.056 4.056 11 C 0.065 3.935 12 O -0.342 6.342 13 C -0.005 4.005 14 N -0.370 5.370 15 C 0.297 3.703 16 O -0.452 6.452 17 C -0.032 4.032 18 O -0.319 6.319 19 C -0.075 4.075 20 C 0.201 3.799 21 F -0.206 7.206 22 F -0.206 7.206 23 C 0.001 3.999 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.238 0.762 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.254 0.746 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.195 0.805 36 H 0.067 0.933 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 29.370 9.109 5.414 31.223 hybrid contribution -0.608 -1.649 0.321 1.787 sum 28.762 7.461 5.735 30.262 Atomic orbital electron populations 1.71033 1.06715 1.28551 1.55335 1.27267 0.96505 1.04958 0.99380 0.83228 0.73377 0.71235 0.78266 1.23410 1.19199 1.18191 1.19967 0.80968 0.94441 1.46462 0.93651 1.45780 1.01489 1.05118 1.85895 1.23773 0.87694 0.94437 0.99719 1.22674 0.91422 0.97365 0.81992 1.86657 1.66550 1.63869 1.17114 1.21638 0.87776 0.94120 0.96917 1.45639 1.11784 1.43819 1.35724 1.20961 0.82202 0.83250 0.83848 1.90752 1.74584 1.49853 1.29995 1.22434 0.83364 0.99709 0.97691 1.88037 1.22599 1.63652 1.57609 1.24088 0.88147 0.96488 0.98805 1.22877 0.96830 0.81162 0.78982 1.92971 1.88638 1.42716 1.96229 1.92973 1.96481 1.91764 1.39391 1.22643 0.85277 0.93420 0.98597 0.94649 0.91457 0.92430 0.76206 0.90094 0.90049 0.74629 0.86292 0.85960 0.87041 0.86892 0.80480 0.93292 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.70 13.70 21.65 0.30 -63.40 16 2 C -0.09 -5.46 5.50 84.86 0.47 -5.00 16 3 Si 1.11 52.24 25.13 68.60 1.72 53.96 16 4 H -0.31 -14.81 7.11 99.48 0.71 -14.10 16 5 H -0.27 -11.07 6.64 99.48 0.66 -10.41 16 6 H -0.26 -10.63 6.13 99.48 0.61 -10.02 16 7 C -0.29 -17.33 11.08 84.03 0.93 -16.40 16 8 H 0.05 2.95 8.05 -2.91 -0.02 2.93 16 9 N -0.65 -31.65 3.69 -738.49 -2.73 -34.38 16 10 C 0.07 2.55 5.13 83.26 0.43 2.98 16 11 C 0.11 3.22 1.74 -10.37 -0.02 3.20 16 12 O -0.53 -15.31 13.56 -148.98 -2.02 -17.34 16 13 C 0.12 2.83 5.43 86.38 0.47 3.30 16 14 N -0.71 -12.23 5.34 -463.06 -2.47 -14.70 16 15 C 0.51 10.72 7.91 87.66 0.69 11.41 16 16 O -0.57 -18.95 16.50 16.01 0.26 -18.68 16 17 C 0.05 0.53 6.42 71.24 0.46 0.99 16 18 O -0.40 -7.35 9.76 -129.94 -1.27 -8.61 16 19 C 0.00 0.01 6.16 71.98 0.44 0.45 16 20 C 0.25 2.66 5.63 71.98 0.41 3.07 16 21 F -0.22 -4.18 17.28 44.97 0.78 -3.41 16 22 F -0.22 -4.27 17.28 44.97 0.78 -3.49 16 23 C 0.13 4.77 8.10 83.17 0.67 5.44 16 24 H 0.24 16.18 8.73 -92.71 -0.81 15.37 16 25 H 0.07 2.37 7.50 -2.39 -0.02 2.36 16 26 H 0.06 2.13 4.67 -2.39 -0.01 2.12 16 27 H 0.39 6.43 7.21 -74.06 -0.53 5.90 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.08 2.04 7.89 -2.39 -0.02 2.02 16 30 H 0.42 4.09 6.95 -92.71 -0.64 3.44 16 31 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.18 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 Total: -1.00 -93.57 321.32 0.06 -93.51 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -0.24 Total: 7.09 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 4.95 Total: 9.45 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -4.91 Total: -112.48 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -3.03 Total: -44.63 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 1.55 Total: -6.90 kcal Atomic # 14 Polarization: 52.24 SS G_CDS: 1.72 Total: 53.96 kcal Total: -93.57 0.06 -93.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672100012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.557 kcal (2) G-P(sol) polarization free energy of solvation -93.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds