Wall clock time and date at job start Fri Apr 10 2020 17:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35907 * 117.00309 * 2 1 4 4 C 1.38795 * 120.43550 * 0.04970 * 3 2 1 5 5 N 1.31816 * 120.83598 * 179.97438 * 4 3 2 6 6 C 1.31811 * 121.84910 * 0.02562 * 5 4 3 7 7 C 1.38878 * 120.78747 * 359.97094 * 6 5 4 8 8 N 1.39965 * 120.46044 * 180.02562 * 7 6 5 9 9 C 1.34776 * 119.99764 * 145.03157 * 8 7 6 10 10 O 1.21585 * 120.00319 * 4.67854 * 9 8 7 11 11 N 1.34781 * 119.99649 * 184.67371 * 9 8 7 12 12 C 1.46502 * 119.99777 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47203 * 180.02562 * 12 11 9 14 14 O 1.21290 * 119.99674 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00453 * 180.02562 * 13 12 11 16 16 C 1.37093 * 120.00319 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00097 * 359.97438 * 16 15 13 18 18 C 1.38948 * 119.99875 * 179.97438 * 16 15 13 19 19 N 1.31407 * 120.00323 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99834 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47037 * 60.00085 * 20 18 16 22 22 H 1.48508 * 109.47134 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47203 * 299.99800 * 20 18 16 24 24 C 1.38965 * 120.44043 * 180.02562 * 3 2 1 25 25 H 1.09003 * 109.47241 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46792 * 299.99655 * 1 2 3 27 27 H 1.09001 * 109.47505 * 59.99103 * 1 2 3 28 28 H 1.08001 * 119.58490 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.60666 * 179.97438 * 6 5 4 30 30 H 0.96999 * 119.99994 * 325.04064 * 8 7 6 31 31 H 0.96998 * 120.00328 * 0.02562 * 11 9 8 32 32 H 1.08999 * 109.47421 * 300.00433 * 12 11 9 33 33 H 1.08999 * 109.47098 * 60.00073 * 12 11 9 34 34 H 0.97006 * 119.99815 * 0.02562 * 15 13 12 35 35 H 0.96999 * 120.00322 * 180.02562 * 19 18 16 36 36 H 1.08007 * 120.84124 * 0.04865 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2990 2.3807 0.0010 5 7 1.8893 3.5593 0.0016 6 6 3.2019 3.6798 0.0006 7 6 4.0188 2.5568 -0.0004 8 7 5.4119 2.6927 -0.0008 9 6 6.1757 1.8058 0.6673 10 8 5.6623 0.8404 1.1990 11 7 7.5087 1.9890 0.7459 12 6 8.3390 1.0246 1.4717 13 6 9.7813 1.4572 1.4105 14 8 10.0857 2.4711 0.8184 15 7 10.7331 0.7171 2.0127 16 6 12.0452 1.1104 1.9565 17 1 12.3162 2.0132 1.4293 18 6 13.0263 0.3475 2.5779 19 7 12.6966 -0.7512 3.2189 20 14 14.8141 0.8838 2.5020 21 1 14.9553 2.2251 3.1234 22 1 15.6559 -0.0941 3.2371 23 1 15.2523 0.9463 1.0845 24 6 3.4332 1.2942 -0.0005 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 0.2205 2.3246 0.0014 29 1 3.6473 4.6636 0.0007 30 1 5.8275 3.4253 -0.4819 31 1 7.9182 2.7593 0.3220 32 1 8.0176 0.9790 2.5123 33 1 8.2350 0.0400 1.0159 34 1 10.4898 -0.0944 2.4853 35 1 13.3815 -1.2835 3.6530 36 1 4.0415 0.4018 -0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673992714.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:06 Heat of formation + Delta-G solvation = -58.265368 kcal Electronic energy + Delta-G solvation = -22174.256220 eV Core-core repulsion = 18466.462856 eV Total energy + Delta-G solvation = -3707.793364 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17078 -39.99001 -38.51993 -38.06977 -35.20655 -34.55420 -33.81563 -31.74637 -31.41661 -29.97121 -27.88134 -27.34956 -24.68600 -23.96751 -22.84629 -20.92901 -19.70301 -18.93712 -18.54015 -18.02147 -17.09142 -16.99427 -16.31165 -16.12669 -15.73015 -15.50392 -14.87373 -14.69924 -14.45758 -14.25043 -14.07327 -13.73131 -13.53835 -13.21276 -12.80120 -12.26993 -12.23107 -12.09907 -11.80358 -11.66456 -11.14599 -10.99860 -10.53722 -10.43163 -10.33291 -9.69426 -9.66704 -9.10648 -8.87244 -8.69397 -8.36769 -8.14593 -6.55142 -3.97539 0.86420 1.13526 2.39803 2.93135 3.08386 3.11763 3.19571 3.23211 3.63185 3.69500 4.01939 4.18694 4.32469 4.47843 4.70685 4.79557 4.81200 4.82068 4.92978 5.10179 5.13247 5.21704 5.70844 5.79672 5.81964 5.90122 5.99404 6.03275 6.49558 6.54874 6.77115 6.99147 7.42229 7.71480 7.87323 7.92285 8.39633 8.48363 9.00312 9.34374 9.81827 10.61513 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.040771 B = 0.002448 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.598664 B =11433.963865 C =12022.229836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.098 3.902 4 C -0.010 4.010 5 N -0.431 5.431 6 C 0.036 3.964 7 C 0.165 3.835 8 N -0.682 5.682 9 C 0.704 3.296 10 O -0.576 6.576 11 N -0.714 5.714 12 C 0.127 3.873 13 C 0.427 3.573 14 O -0.598 6.598 15 N -0.547 5.547 16 C -0.307 4.307 17 H 0.105 0.895 18 C 0.027 3.973 19 N -0.894 5.894 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.115 4.115 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.157 0.843 29 H 0.160 0.840 30 H 0.414 0.586 31 H 0.410 0.590 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.396 0.604 35 H 0.275 0.725 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.657 3.371 -6.182 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.049 3.951 4 C -0.168 4.168 5 N -0.139 5.139 6 C -0.126 4.126 7 C 0.067 3.933 8 N -0.330 5.330 9 C 0.403 3.597 10 O -0.454 6.454 11 N -0.371 5.371 12 C -0.001 4.001 13 C 0.212 3.788 14 O -0.485 6.485 15 N -0.181 5.181 16 C -0.436 4.436 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.198 1.198 24 C -0.144 4.144 25 H 0.121 0.879 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.174 0.826 29 H 0.178 0.822 30 H 0.250 0.750 31 H 0.248 0.752 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.230 0.770 35 H 0.085 0.915 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -21.087 3.520 -5.926 22.185 hybrid contribution 1.485 -0.271 -0.052 1.510 sum -19.603 3.248 -5.978 20.750 Atomic orbital electron populations 1.23127 0.78025 1.04367 1.01535 1.86114 1.21549 1.26028 1.88340 1.19904 0.92538 0.85640 0.96972 1.22792 1.00445 0.87170 1.06418 1.67480 1.10896 1.26230 1.09320 1.22473 0.88660 0.97680 1.03760 1.18281 0.82982 0.93793 0.98288 1.42499 1.03774 1.32237 1.54504 1.15841 0.81640 0.82693 0.79476 1.90936 1.72449 1.30336 1.51637 1.44769 1.04356 1.30007 1.57987 1.20869 0.89629 0.92152 0.97499 1.19688 0.86389 0.86887 0.85804 1.90495 1.82170 1.27367 1.48499 1.41776 1.06553 1.23585 1.46210 1.19679 0.81438 1.09684 1.32792 0.87685 1.25336 1.00860 0.95419 0.96048 1.69601 1.35375 1.14423 1.33955 0.85863 0.81030 0.78381 0.78640 1.19742 1.20828 1.19750 1.21069 0.91883 0.98930 1.02540 0.87904 0.92349 0.92404 0.82554 0.82232 0.74992 0.75219 0.89678 0.89659 0.76972 0.91462 0.82102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.82 101.05 0.99 1.14 16 2 O -0.31 -3.40 10.51 -19.45 -0.20 -3.60 16 3 C 0.10 1.17 6.71 -39.11 -0.26 0.90 16 4 C -0.01 -0.10 10.22 -17.35 -0.18 -0.28 16 5 N -0.43 -5.04 10.35 -12.96 -0.13 -5.17 16 6 C 0.04 0.39 11.12 -17.32 -0.19 0.19 16 7 C 0.17 2.01 6.32 -83.56 -0.53 1.49 16 8 N -0.68 -7.85 5.36 -14.14 -0.08 -7.93 16 9 C 0.70 10.68 8.42 -86.91 -0.73 9.95 16 10 O -0.58 -10.52 13.82 5.29 0.07 -10.45 16 11 N -0.71 -11.12 5.53 -66.41 -0.37 -11.48 16 12 C 0.13 2.23 6.15 -5.19 -0.03 2.20 16 13 C 0.43 9.45 7.85 -10.99 -0.09 9.36 16 14 O -0.60 -14.78 15.24 5.55 0.08 -14.70 16 15 N -0.55 -13.24 5.29 -10.97 -0.06 -13.29 16 16 C -0.31 -8.18 9.68 -14.94 -0.14 -8.32 16 17 H 0.11 2.91 7.16 -52.48 -0.38 2.53 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 19 N -0.89 -23.54 13.05 55.50 0.72 -22.82 16 20 Si 0.93 20.24 29.55 -169.99 -5.02 15.22 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 24 C -0.12 -1.56 8.76 -38.96 -0.34 -1.90 16 25 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.30 7.68 -51.92 -0.40 -0.10 16 27 H 0.06 0.27 7.68 -51.93 -0.40 -0.13 16 28 H 0.16 1.20 6.31 -52.49 -0.33 0.87 16 29 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.41 3.38 8.84 -40.82 -0.36 3.02 16 31 H 0.41 6.08 7.46 -40.82 -0.30 5.78 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.40 9.23 7.90 -40.82 -0.32 8.91 16 35 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.16 2.47 6.31 -52.48 -0.33 2.14 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -32.73 320.68 -5.40 -38.12 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -3.65 Total: 15.96 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: -1.60 Total: 15.32 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 0.09 Total: -60.70 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.05 Total: -28.75 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.73 -5.40 -38.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673992714.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.142 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds