Wall clock time and date at job start Fri Apr 10 2020 17:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 113.99886 * 2 1 4 4 C 1.50703 * 109.46702 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00430 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99927 * 180.02562 * 4 3 2 7 7 N 1.40100 * 119.99964 * 180.02562 * 6 4 3 8 8 C 1.34777 * 119.99964 * 179.97438 * 7 6 4 9 9 O 1.21578 * 120.00264 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99875 * 359.97438 * 8 7 6 11 11 C 1.39469 * 119.99770 * 185.12102 * 10 8 7 12 12 C 1.38646 * 119.64513 * 185.36995 * 11 10 8 13 13 C 1.40824 * 118.67298 * 179.70215 * 12 11 10 14 14 C 1.41542 * 120.99482 * 180.25143 * 13 12 11 15 15 H 1.08005 * 119.99396 * 153.81872 * 14 13 12 16 16 C 1.40035 * 120.00223 * 333.81481 * 14 13 12 17 17 N 1.30738 * 120.00050 * 350.11656 * 16 14 13 18 18 Si 1.86797 * 119.99783 * 170.11613 * 16 14 13 19 19 H 1.48509 * 109.47172 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46937 * 119.99999 * 18 16 14 21 21 H 1.48502 * 109.46904 * 240.00278 * 18 16 14 22 22 C 1.41159 * 118.00323 * 0.27422 * 13 12 11 23 23 C 1.36594 * 119.13142 * 0.02562 * 22 13 12 24 24 N 1.32071 * 121.25719 * 0.02562 * 23 22 13 25 25 H 1.09004 * 109.46689 * 299.99485 * 1 2 3 26 26 H 1.08999 * 109.47041 * 59.99584 * 1 2 3 27 27 H 1.08999 * 109.47481 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47285 * 60.01186 * 3 2 1 29 29 H 1.08994 * 109.47385 * 299.99902 * 3 2 1 30 30 H 0.96999 * 119.99955 * 359.97438 * 6 4 3 31 31 H 0.96999 * 120.00081 * 359.97438 * 7 6 4 32 32 H 0.97000 * 120.00537 * 5.12572 * 10 8 7 33 33 H 1.08001 * 120.66560 * 359.97438 * 12 11 10 34 34 H 0.97000 * 119.99890 * 179.97438 * 17 16 14 35 35 H 1.08001 * 120.43762 * 179.97438 * 22 13 12 36 36 H 1.07998 * 119.37254 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0015 6 7 4.2765 2.2967 -0.0002 7 7 5.6731 2.1860 -0.0014 8 6 6.4371 3.2963 -0.0015 9 8 7.6491 3.2003 -0.0029 10 7 5.8575 4.5131 -0.0010 11 6 6.6437 5.6600 -0.1089 12 6 6.0533 6.9093 0.0044 13 6 6.8674 8.0535 -0.1015 14 6 6.3171 9.3526 0.0118 15 1 6.9339 10.1728 0.3486 16 6 4.9731 9.5745 -0.3127 17 7 4.2789 8.6355 -0.9004 18 14 4.1722 11.2123 0.0943 19 1 5.1652 12.0991 0.7523 20 1 3.6902 11.8519 -1.1563 21 1 3.0247 10.9882 1.0098 22 6 8.2486 7.8659 -0.3246 23 6 8.7387 6.5951 -0.4289 24 7 7.9457 5.5441 -0.3255 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6887 1.8463 0.8901 29 1 1.6886 1.8463 -0.8899 30 1 3.8594 3.1724 0.0001 31 1 6.0902 1.3103 -0.0021 32 1 4.8936 4.5912 0.0744 33 1 4.9910 7.0031 0.1749 34 1 3.3478 8.7891 -1.1249 35 1 8.9090 8.7158 -0.4126 36 1 9.7947 6.4471 -0.6000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673999989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:39:08 Heat of formation + Delta-G solvation = -21.097354 kcal Electronic energy + Delta-G solvation = -22622.412627 eV Core-core repulsion = 18916.230989 eV Total energy + Delta-G solvation = -3706.181638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57480 -39.54817 -38.18622 -37.65134 -35.56225 -34.47756 -33.80227 -31.55651 -30.58710 -28.90015 -28.34578 -26.11567 -26.07659 -22.60044 -22.08912 -21.46324 -20.29036 -19.00645 -18.12277 -17.59374 -16.69821 -16.57873 -16.55898 -15.61692 -15.37512 -15.27143 -14.92125 -14.56726 -14.44218 -14.27866 -13.82225 -13.42139 -12.96414 -12.84705 -12.68362 -12.53422 -11.86724 -11.55566 -11.32394 -11.25424 -10.98967 -10.50628 -10.28947 -10.20833 -10.18341 -9.96319 -9.84347 -9.50631 -8.37742 -8.07234 -7.85741 -7.16940 -6.85005 -4.71625 1.64399 2.21521 2.57845 2.71310 2.96195 3.01612 3.09316 3.15111 3.49888 3.61574 3.78604 4.16336 4.61189 4.66465 4.74088 4.91908 4.94609 4.99321 5.30487 5.58814 5.77741 6.26478 6.31111 6.42935 6.59932 6.69330 6.81323 6.94435 7.04108 7.23687 7.30732 7.36718 7.63748 7.79830 8.03407 8.24726 8.35802 8.62369 8.67332 8.86320 9.58902 10.00334 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.014448 B = 0.003769 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.505962 B = 7428.007072 C = 9295.027625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.053 3.947 4 C 0.514 3.486 5 O -0.517 6.517 6 N -0.527 5.527 7 N -0.537 5.537 8 C 0.702 3.298 9 O -0.510 6.510 10 N -0.664 5.664 11 C 0.349 3.651 12 C -0.240 4.240 13 C 0.143 3.857 14 C -0.451 4.451 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.796 5.796 18 Si 0.915 3.085 19 H -0.260 1.260 20 H -0.273 1.273 21 H -0.272 1.272 22 C -0.279 4.279 23 C 0.120 3.880 24 N -0.555 5.555 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.421 0.579 31 H 0.439 0.561 32 H 0.399 0.601 33 H 0.133 0.867 34 H 0.280 0.720 35 H 0.103 0.897 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.555 -7.170 1.594 13.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.029 4.029 4 C 0.299 3.701 5 O -0.389 6.389 6 N -0.280 5.280 7 N -0.298 5.298 8 C 0.401 3.599 9 O -0.376 6.376 10 N -0.314 5.314 11 C 0.124 3.876 12 C -0.266 4.266 13 C 0.134 3.866 14 C -0.483 4.483 15 H 0.101 0.899 16 C -0.143 4.143 17 N -0.422 5.422 18 Si 0.739 3.261 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.197 1.197 22 C -0.303 4.303 23 C -0.033 4.033 24 N -0.274 5.274 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.262 0.738 31 H 0.285 0.715 32 H 0.234 0.766 33 H 0.151 0.849 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.020 -8.994 1.402 13.537 hybrid contribution -1.706 1.986 0.135 2.621 sum -11.726 -7.008 1.537 13.747 Atomic orbital electron populations 1.22871 0.79887 1.03498 1.00409 1.88007 1.20102 1.24747 1.95504 1.22063 0.89741 0.87494 1.03578 1.20395 0.88697 0.83647 0.77403 1.90767 1.74129 1.25925 1.48114 1.44723 0.96249 1.09884 1.77107 1.44946 0.92135 1.09955 1.82719 1.15926 0.85053 0.79841 0.79054 1.91127 1.09580 1.82644 1.54294 1.42544 1.09443 1.03653 1.75807 1.17928 0.88907 0.83436 0.97348 1.21603 1.01768 0.89244 1.13961 1.17590 0.90340 0.93038 0.85610 1.19636 0.94896 0.94603 1.39139 0.89918 1.25949 0.97198 0.98900 0.92204 1.69743 1.09654 1.33878 1.28932 0.86145 0.79457 0.81418 0.79059 1.18317 1.19857 1.19683 1.21717 0.96978 0.96947 1.14623 1.21481 0.97468 0.88067 0.96290 1.67126 1.03002 1.33752 1.23470 0.93552 0.93536 0.88952 0.89383 0.89342 0.73781 0.71483 0.76603 0.84903 0.90884 0.87838 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.77 10.24 -55.14 -0.56 -4.33 16 3 C 0.05 0.41 6.42 36.01 0.23 0.64 16 4 C 0.51 6.02 8.02 -10.98 -0.09 5.93 16 5 O -0.52 -8.36 16.34 -14.35 -0.23 -8.60 16 6 N -0.53 -5.86 6.25 31.22 0.20 -5.67 16 7 N -0.54 -7.95 6.26 27.63 0.17 -7.78 16 8 C 0.70 13.24 8.63 -86.92 -0.75 12.49 16 9 O -0.51 -11.89 15.47 5.30 0.08 -11.80 16 10 N -0.66 -12.26 5.35 -15.86 -0.08 -12.35 16 11 C 0.35 8.11 7.41 -154.67 -1.15 6.96 16 12 C -0.24 -5.75 8.62 -38.45 -0.33 -6.08 16 13 C 0.14 3.59 5.60 -106.55 -0.60 2.99 16 14 C -0.45 -11.08 9.14 -37.65 -0.34 -11.42 16 15 H 0.08 1.96 7.87 -52.48 -0.41 1.54 16 16 C 0.08 1.72 5.31 -17.34 -0.09 1.63 16 17 N -0.80 -18.33 10.70 55.55 0.59 -17.74 16 18 Si 0.91 17.05 29.57 -169.99 -5.03 12.03 16 19 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 20 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 22 C -0.28 -6.60 9.85 -39.07 -0.38 -6.98 16 23 C 0.12 2.81 11.10 -18.04 -0.20 2.61 16 24 N -0.55 -13.81 7.90 -12.75 -0.10 -13.91 16 25 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.42 3.48 6.72 -182.60 -1.23 2.26 16 31 H 0.44 6.57 8.10 -182.60 -1.48 5.09 16 32 H 0.40 5.69 6.64 -40.82 -0.27 5.42 16 33 H 0.13 3.10 6.11 -52.49 -0.32 2.78 16 34 H 0.28 5.78 8.29 -40.82 -0.34 5.44 16 35 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 321.05 15.07 4.84 4.84 Total: -1.00 -34.21 321.05 -8.52 -42.73 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -5.80 Total: 12.51 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -2.59 Total: 10.07 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.78 Total: -57.44 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.72 Total: -24.73 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.21 -8.52 -42.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673999989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.633 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds