Wall clock time and date at job start Fri Apr 10 2020 17:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35975 * 116.99993 * 2 1 4 4 C 1.38716 * 119.97526 * 0.02690 * 3 2 1 5 5 C 1.38236 * 120.11965 * 179.97438 * 4 3 2 6 6 C 1.38508 * 120.06718 * 359.97438 * 5 4 3 7 7 O 1.36065 * 120.02877 * 180.27681 * 6 5 4 8 8 C 1.42902 * 116.99421 * 359.72606 * 7 6 5 9 9 C 1.39265 * 119.94801 * 0.02562 * 6 5 4 10 10 N 1.40159 * 120.05757 * 180.02562 * 9 6 5 11 11 C 1.34782 * 119.99715 * 145.31452 * 10 9 6 12 12 O 1.21583 * 120.00109 * 4.43611 * 11 10 9 13 13 N 1.34780 * 119.99455 * 184.43753 * 11 10 9 14 14 C 1.46492 * 120.00368 * 359.97438 * 13 11 10 15 15 C 1.46502 * 119.99592 * 179.97438 * 13 11 10 16 16 C 1.50696 * 109.47227 * 89.99760 * 15 13 11 17 17 H 1.08006 * 120.00152 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00407 * 179.97438 * 16 15 13 19 19 N 1.31509 * 120.00196 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99589 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47305 * 90.00018 * 20 18 16 22 22 H 1.48502 * 109.47064 * 209.99930 * 20 18 16 23 23 H 1.48497 * 109.47399 * 329.99701 * 20 18 16 24 24 C 1.38630 * 119.97535 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47390 * 299.99768 * 1 2 3 26 26 H 1.09000 * 109.46931 * 59.99846 * 1 2 3 27 27 H 1.09000 * 109.46889 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.93741 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.96449 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.47346 * 299.99787 * 8 7 6 31 31 H 1.09007 * 109.47272 * 60.00216 * 8 7 6 32 32 H 1.09004 * 109.46674 * 179.97438 * 8 7 6 33 33 H 0.96998 * 120.00465 * 325.31154 * 10 9 6 34 34 H 1.09006 * 109.47399 * 90.00082 * 14 13 11 35 35 H 1.09006 * 109.47254 * 209.99984 * 14 13 11 36 36 H 1.09002 * 109.47469 * 330.00224 * 14 13 11 37 37 H 1.09002 * 109.47364 * 210.00020 * 15 13 11 38 38 H 1.08996 * 109.47159 * 329.99993 * 15 13 11 39 39 H 0.97002 * 120.00139 * 180.02562 * 19 18 16 40 40 H 1.08010 * 120.03386 * 0.05162 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2903 2.3746 0.0006 5 6 1.9148 3.6079 0.0011 6 6 3.2977 3.6855 0.0016 7 8 3.9115 4.8998 0.0078 8 6 3.0678 6.0531 0.0075 9 6 4.0594 2.5196 0.0010 10 7 5.4590 2.5955 0.0021 11 6 6.1833 1.6729 0.6660 12 8 5.6279 0.7301 1.1960 13 7 7.5233 1.7955 0.7423 14 6 8.1926 2.9311 0.1032 15 6 8.3106 0.7930 1.4644 16 6 8.7177 -0.3048 0.5157 17 1 8.4201 -0.2601 -0.5216 18 6 9.4709 -1.3659 0.9715 19 7 9.8265 -2.3237 0.1434 20 14 9.9862 -1.4430 2.7653 21 1 8.9501 -2.1640 3.5475 22 1 11.2809 -2.1617 2.8780 23 1 10.1375 -0.0646 3.2966 24 6 3.4307 1.2835 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2119 2.3164 0.0006 29 1 1.3237 4.5118 0.0011 30 1 2.4425 6.0456 -0.8852 31 1 2.4347 6.0404 0.8948 32 1 3.6828 6.9531 0.0133 33 1 5.9063 3.3118 -0.4750 34 1 8.2594 3.7583 0.8100 35 1 9.1952 2.6352 -0.2056 36 1 7.6212 3.2451 -0.7703 37 1 9.2020 1.2621 1.8811 38 1 7.7107 0.3720 2.2712 39 1 10.3561 -3.0704 0.4642 40 1 4.0192 0.3778 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001752544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:19 Heat of formation + Delta-G solvation = -52.014584 kcal Electronic energy + Delta-G solvation = -23776.804751 eV Core-core repulsion = 20172.822785 eV Total energy + Delta-G solvation = -3603.981966 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74354 -39.39129 -38.88768 -36.47452 -34.94411 -34.16378 -32.43642 -30.29596 -29.41639 -28.18506 -27.28799 -26.90891 -25.86524 -23.25237 -22.14709 -21.48750 -19.41402 -18.65478 -17.69331 -17.37078 -16.92028 -16.45131 -16.06292 -15.85889 -15.53750 -14.91524 -14.76673 -14.64798 -13.90866 -13.88598 -13.36344 -13.28679 -12.82245 -12.77369 -12.51455 -12.39883 -12.30893 -12.00416 -11.69020 -11.66072 -11.45409 -10.98454 -10.90170 -10.57102 -10.47914 -10.15455 -9.95187 -9.52354 -9.25830 -8.54258 -8.24429 -7.73169 -7.42995 -6.04013 -4.02570 1.33817 1.52231 3.03992 3.18746 3.33652 3.39352 3.41621 3.49440 3.64089 4.02194 4.43366 4.46307 4.69762 4.87767 5.00172 5.01806 5.02698 5.09792 5.21395 5.28670 5.31462 5.41136 5.51159 5.54391 5.82228 5.88995 5.94531 6.12817 6.17258 6.44211 6.48539 6.60220 6.90336 6.97626 7.26939 7.34546 7.51492 7.58109 7.66789 8.49658 8.52418 8.99364 9.19170 9.56331 11.09461 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.016552 B = 0.004370 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.252540 B = 6405.660413 C = 7696.783924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.114 3.886 4 C -0.197 4.197 5 C -0.152 4.152 6 C 0.056 3.944 7 O -0.318 6.318 8 C 0.031 3.969 9 C 0.194 3.806 10 N -0.685 5.685 11 C 0.701 3.299 12 O -0.567 6.567 13 N -0.607 5.607 14 C 0.084 3.916 15 C 0.230 3.770 16 C -0.529 4.529 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.876 3.124 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 C -0.119 4.119 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.407 0.593 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.032 0.968 38 H 0.039 0.961 39 H 0.264 0.736 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.878 16.489 -1.462 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.068 3.932 4 C -0.217 4.217 5 C -0.172 4.172 6 C 0.009 3.991 7 O -0.232 6.232 8 C -0.064 4.064 9 C 0.096 3.904 10 N -0.335 5.335 11 C 0.402 3.598 12 O -0.443 6.443 13 N -0.342 5.342 14 C -0.060 4.060 15 C 0.110 3.890 16 C -0.568 4.568 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.140 4.140 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.116 0.884 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.115 0.885 33 H 0.245 0.755 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.739 15.459 -1.035 22.809 hybrid contribution 0.036 0.516 0.552 0.757 sum -16.703 15.974 -0.483 23.117 Atomic orbital electron populations 1.23006 0.78961 1.03710 1.00925 1.86143 1.20773 1.26639 1.89006 1.18689 0.91748 0.84117 0.98598 1.20892 0.99682 0.91581 1.09553 1.20674 0.92255 0.98235 1.06013 1.18599 0.90893 0.84306 1.05295 1.86041 1.35306 1.11975 1.89893 1.22976 0.95774 0.86652 1.01001 1.16459 0.82278 0.90180 1.01454 1.42726 1.03521 1.32178 1.55045 1.15857 0.82070 0.82175 0.79657 1.90893 1.69751 1.32143 1.51476 1.47105 1.03730 1.26909 1.56439 1.21619 0.99418 0.88685 0.96276 1.19621 0.89894 0.86731 0.92796 1.21362 1.33095 1.04767 0.97539 0.90726 1.24841 0.95487 0.95129 0.97511 1.69898 1.37951 1.10751 1.35038 0.86853 0.78277 0.78759 0.85796 1.19860 1.21126 1.19061 1.20532 0.91581 0.98355 1.03540 0.92920 0.92947 0.88436 0.85475 0.85175 0.92958 0.92952 0.88502 0.75516 0.93481 0.90074 0.92809 0.94993 0.94333 0.92594 0.82004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.69 10.50 -19.66 -0.21 -4.89 16 3 C 0.11 1.78 6.68 -39.26 -0.26 1.52 16 4 C -0.20 -2.44 9.03 -39.41 -0.36 -2.80 16 5 C -0.15 -1.81 9.03 -39.48 -0.36 -2.16 16 6 C 0.06 0.79 6.70 -39.10 -0.26 0.53 16 7 O -0.32 -3.93 10.05 -19.95 -0.20 -4.14 16 8 C 0.03 0.24 9.81 101.05 0.99 1.23 16 9 C 0.19 3.31 6.32 -83.50 -0.53 2.79 16 10 N -0.68 -12.08 5.07 -14.12 -0.07 -12.15 16 11 C 0.70 15.38 8.13 -86.91 -0.71 14.68 16 12 O -0.57 -14.62 13.34 5.29 0.07 -14.55 16 13 N -0.61 -13.00 2.86 -188.74 -0.54 -13.54 16 14 C 0.08 1.33 10.24 59.84 0.61 1.94 16 15 C 0.23 5.75 4.23 -5.19 -0.02 5.73 16 16 C -0.53 -15.42 9.94 -34.44 -0.34 -15.77 16 17 H 0.07 2.39 8.06 -52.48 -0.42 1.97 16 18 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 19 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 20 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 21 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 24 C -0.12 -2.18 8.63 -39.27 -0.34 -2.52 16 25 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 26 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.13 1.19 6.28 -52.49 -0.33 0.86 16 29 H 0.13 1.12 6.29 -52.49 -0.33 0.79 16 30 H 0.05 0.33 7.67 -51.93 -0.40 -0.06 16 31 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.41 6.02 6.26 -40.82 -0.26 5.76 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 36 H 0.05 0.71 6.30 -51.93 -0.33 0.38 16 37 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 38 H 0.04 1.03 6.85 -51.93 -0.36 0.67 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 40 H 0.16 3.50 6.19 -52.48 -0.33 3.18 16 LS Contribution 332.83 15.07 5.02 5.02 Total: -1.00 -36.25 332.83 -5.66 -41.91 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.16 Total: 3.95 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -0.68 Total: 8.47 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.16 Total: -52.94 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.34 Total: -23.57 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.25 -5.66 -41.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001752544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.104 kcal (2) G-P(sol) polarization free energy of solvation -36.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds