Wall clock time and date at job start Fri Apr 10 2020 17:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35975 * 116.99993 * 2 1 4 4 C 1.38716 * 119.97526 * 0.02690 * 3 2 1 5 5 C 1.38236 * 120.11965 * 179.97438 * 4 3 2 6 6 C 1.38508 * 120.06718 * 359.97438 * 5 4 3 7 7 O 1.36065 * 120.02877 * 180.27681 * 6 5 4 8 8 C 1.42902 * 116.99421 * 359.72606 * 7 6 5 9 9 C 1.39265 * 119.94801 * 0.02562 * 6 5 4 10 10 N 1.40159 * 120.05757 * 180.02562 * 9 6 5 11 11 C 1.34782 * 119.99715 * 145.31452 * 10 9 6 12 12 O 1.21583 * 120.00109 * 4.43611 * 11 10 9 13 13 N 1.34780 * 119.99455 * 184.43753 * 11 10 9 14 14 C 1.46492 * 120.00368 * 359.97438 * 13 11 10 15 15 C 1.46502 * 119.99592 * 179.97438 * 13 11 10 16 16 C 1.50696 * 109.47227 * 89.99760 * 15 13 11 17 17 H 1.08006 * 120.00152 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00407 * 179.97438 * 16 15 13 19 19 N 1.31509 * 120.00196 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99589 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47305 * 90.00018 * 20 18 16 22 22 H 1.48502 * 109.47064 * 209.99930 * 20 18 16 23 23 H 1.48497 * 109.47399 * 329.99701 * 20 18 16 24 24 C 1.38630 * 119.97535 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47390 * 299.99768 * 1 2 3 26 26 H 1.09000 * 109.46931 * 59.99846 * 1 2 3 27 27 H 1.09000 * 109.46889 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.93741 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.96449 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.47346 * 299.99787 * 8 7 6 31 31 H 1.09007 * 109.47272 * 60.00216 * 8 7 6 32 32 H 1.09004 * 109.46674 * 179.97438 * 8 7 6 33 33 H 0.96998 * 120.00465 * 325.31154 * 10 9 6 34 34 H 1.09006 * 109.47399 * 90.00082 * 14 13 11 35 35 H 1.09006 * 109.47254 * 209.99984 * 14 13 11 36 36 H 1.09002 * 109.47469 * 330.00224 * 14 13 11 37 37 H 1.09002 * 109.47364 * 210.00020 * 15 13 11 38 38 H 1.08996 * 109.47159 * 329.99993 * 15 13 11 39 39 H 0.97002 * 120.00139 * 180.02562 * 19 18 16 40 40 H 1.08010 * 120.03386 * 0.05162 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2903 2.3746 0.0006 5 6 1.9148 3.6079 0.0011 6 6 3.2977 3.6855 0.0016 7 8 3.9115 4.8998 0.0078 8 6 3.0678 6.0531 0.0075 9 6 4.0594 2.5196 0.0010 10 7 5.4590 2.5955 0.0021 11 6 6.1833 1.6729 0.6660 12 8 5.6279 0.7301 1.1960 13 7 7.5233 1.7955 0.7423 14 6 8.1926 2.9311 0.1032 15 6 8.3106 0.7930 1.4644 16 6 8.7177 -0.3048 0.5157 17 1 8.4201 -0.2601 -0.5216 18 6 9.4709 -1.3659 0.9715 19 7 9.8265 -2.3237 0.1434 20 14 9.9862 -1.4430 2.7653 21 1 8.9501 -2.1640 3.5475 22 1 11.2809 -2.1617 2.8780 23 1 10.1375 -0.0646 3.2966 24 6 3.4307 1.2835 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2119 2.3164 0.0006 29 1 1.3237 4.5118 0.0011 30 1 2.4425 6.0456 -0.8852 31 1 2.4347 6.0404 0.8948 32 1 3.6828 6.9531 0.0133 33 1 5.9063 3.3118 -0.4750 34 1 8.2594 3.7583 0.8100 35 1 9.1952 2.6352 -0.2056 36 1 7.6212 3.2451 -0.7703 37 1 9.2020 1.2621 1.8811 38 1 7.7107 0.3720 2.2712 39 1 10.3561 -3.0704 0.4642 40 1 4.0192 0.3778 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001752544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:18 Heat of formation + Delta-G solvation = -79.503288 kcal Electronic energy + Delta-G solvation = -23777.996751 eV Core-core repulsion = 20172.822785 eV Total energy + Delta-G solvation = -3605.173966 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.98988 -40.78823 -39.87033 -37.65518 -36.61246 -35.61854 -34.58373 -31.50723 -30.72634 -29.75764 -28.12540 -27.70887 -27.39477 -24.95543 -23.47230 -22.74653 -20.97372 -19.89165 -19.14380 -18.78329 -18.63939 -17.58479 -17.43458 -16.82092 -16.53155 -16.46084 -16.34419 -15.64515 -15.56493 -15.11998 -15.02280 -14.50928 -14.41607 -13.99983 -13.68657 -13.63376 -13.58105 -13.35877 -13.19234 -12.81234 -12.46481 -12.44332 -12.42414 -12.04656 -11.94190 -11.73892 -11.63186 -11.15824 -10.95596 -10.81640 -9.65960 -9.29248 -8.56468 -8.32713 -6.38072 0.18907 0.42301 1.33581 1.39224 1.46996 1.63237 2.11599 2.30888 2.32660 2.47266 2.75793 3.00537 3.05920 3.78122 3.98607 4.14018 4.26352 4.28438 4.43770 4.44587 4.51434 4.51929 4.58003 4.63875 4.73958 4.78818 4.82366 4.85570 4.89329 4.93428 5.16094 5.25056 5.37622 5.45465 5.54486 5.68274 5.94933 6.26768 6.38041 6.56826 6.62781 6.96205 7.23420 7.56066 8.84570 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.016552 B = 0.004370 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.252540 B = 6405.660413 C = 7696.783924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.347 6.347 3 C 0.100 3.900 4 C -0.178 4.178 5 C -0.139 4.139 6 C 0.065 3.935 7 O -0.332 6.332 8 C 0.019 3.981 9 C 0.160 3.840 10 N -0.668 5.668 11 C 0.693 3.307 12 O -0.617 6.617 13 N -0.616 5.616 14 C 0.078 3.922 15 C 0.240 3.760 16 C -0.538 4.538 17 H 0.025 0.975 18 C 0.011 3.989 19 N -0.947 5.947 20 Si 0.950 3.050 21 H -0.278 1.278 22 H -0.273 1.273 23 H -0.235 1.235 24 C -0.154 4.154 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.111 0.889 28 H 0.167 0.833 29 H 0.176 0.824 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.420 0.580 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.020 0.980 39 H 0.269 0.731 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.757 20.127 -0.380 27.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.261 6.261 3 C 0.055 3.945 4 C -0.197 4.197 5 C -0.158 4.158 6 C 0.017 3.983 7 O -0.247 6.247 8 C -0.075 4.075 9 C 0.064 3.936 10 N -0.319 5.319 11 C 0.395 3.605 12 O -0.497 6.497 13 N -0.351 5.351 14 C -0.064 4.064 15 C 0.118 3.882 16 C -0.577 4.577 17 H 0.044 0.956 18 C -0.187 4.187 19 N -0.587 5.587 20 Si 0.772 3.228 21 H -0.204 1.204 22 H -0.198 1.198 23 H -0.158 1.158 24 C -0.176 4.176 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.130 0.870 28 H 0.185 0.815 29 H 0.193 0.807 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.135 0.865 33 H 0.260 0.740 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.637 19.188 0.001 26.749 hybrid contribution 0.446 -0.547 0.080 0.710 sum -18.192 18.640 0.081 26.046 Atomic orbital electron populations 1.23372 0.76103 1.05432 1.02682 1.86101 1.23861 1.27063 1.89115 1.18780 0.90966 0.85610 0.99188 1.21305 1.01382 0.90311 1.06721 1.21189 0.91480 0.99670 1.03416 1.18573 0.91446 0.84160 1.04073 1.86033 1.36865 1.12234 1.89534 1.23372 0.96375 0.85333 1.02469 1.16671 0.81824 0.91220 1.03918 1.42397 1.03981 1.31339 1.54213 1.16105 0.82359 0.82317 0.79719 1.90857 1.70875 1.34327 1.53629 1.47105 1.03711 1.27602 1.56648 1.21925 0.99032 0.87620 0.97819 1.19304 0.90692 0.86658 0.91565 1.21581 1.33061 1.06791 0.96220 0.95614 1.25859 0.95380 0.94398 1.03046 1.70056 1.39113 1.11735 1.37763 0.85688 0.77837 0.80423 0.78805 1.20383 1.19842 1.15761 1.20284 0.93086 0.97314 1.06886 0.91238 0.90828 0.87050 0.81520 0.80696 0.91097 0.91665 0.86467 0.73987 0.90034 0.90465 0.90473 0.92322 0.96229 0.92250 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.35 -10.68 10.50 -93.27 -0.98 -11.66 16 3 C 0.10 3.16 6.68 22.48 0.15 3.31 16 4 C -0.18 -3.87 9.03 22.38 0.20 -3.67 16 5 C -0.14 -2.75 9.03 22.33 0.20 -2.55 16 6 C 0.06 1.70 6.70 22.58 0.15 1.85 16 7 O -0.33 -7.23 10.05 -94.29 -0.95 -8.18 16 8 C 0.02 0.20 9.81 113.37 1.11 1.31 16 9 C 0.16 5.61 6.32 38.16 0.24 5.85 16 10 N -0.67 -24.31 5.07 -316.84 -1.61 -25.91 16 11 C 0.69 32.00 8.13 179.05 1.45 33.45 16 12 O -0.62 -34.35 13.34 -3.98 -0.05 -34.40 16 13 N -0.62 -26.99 2.86 -869.32 -2.48 -29.47 16 14 C 0.08 2.39 10.24 127.77 1.31 3.70 16 15 C 0.24 12.22 4.23 85.63 0.36 12.59 16 16 C -0.54 -32.85 9.94 25.60 0.25 -32.60 16 17 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 18 C 0.01 0.67 5.47 84.66 0.46 1.13 16 19 N -0.95 -61.48 13.96 21.45 0.30 -61.18 16 20 Si 0.95 45.58 27.47 68.60 1.88 47.47 16 21 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.23 -10.01 6.54 99.48 0.65 -9.36 16 24 C -0.15 -6.08 8.63 22.47 0.19 -5.89 16 25 H 0.07 0.94 7.66 -2.39 -0.02 0.92 16 26 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 27 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.17 2.26 6.28 -2.91 -0.02 2.25 16 29 H 0.18 1.90 6.29 -2.91 -0.02 1.88 16 30 H 0.07 0.54 7.67 -2.39 -0.02 0.52 16 31 H 0.06 0.57 7.65 -2.38 -0.02 0.55 16 32 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.42 12.32 6.26 -92.71 -0.58 11.74 16 34 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.08 2.42 8.07 -2.38 -0.02 2.40 16 36 H 0.08 1.96 6.30 -2.39 -0.02 1.94 16 37 H 0.06 2.67 7.13 -2.39 -0.02 2.65 16 38 H 0.02 1.07 6.85 -2.39 -0.02 1.06 16 39 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 40 H 0.11 5.45 6.19 -2.91 -0.02 5.44 16 Total: -1.00 -87.47 332.83 3.76 -83.71 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.44 Total: 19.72 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 7.21 Total: 19.91 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -3.79 Total: -116.57 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -1.98 Total: -54.25 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.88 Total: 47.47 kcal Total: -87.47 3.76 -83.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001752544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.207 kcal (2) G-P(sol) polarization free energy of solvation -87.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds