Wall clock time and date at job start Fri Apr 10 2020 17:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.50700 * 109.46939 * 153.21627 * 3 2 1 5 5 O 1.21273 * 120.00175 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99896 * 179.97438 * 4 3 2 7 7 C 1.46497 * 120.00075 * 179.97438 * 6 4 3 8 8 C 1.52994 * 109.47162 * 180.02562 * 7 6 4 9 9 N 1.46902 * 109.47050 * 179.97438 * 8 7 6 10 10 C 1.46900 * 110.99990 * 169.99570 * 9 8 7 11 11 C 1.53241 * 109.33977 * 187.25390 * 10 9 8 12 12 N 1.47074 * 108.51879 * 306.17136 * 11 10 9 13 13 C 1.34784 * 120.88239 * 231.18421 * 12 11 10 14 14 O 1.21691 * 119.99743 * 355.17259 * 13 12 11 15 15 C 1.46372 * 120.00278 * 175.17093 * 13 12 11 16 16 H 1.08007 * 119.99803 * 13.25059 * 15 13 12 17 17 C 1.40041 * 120.00304 * 193.24972 * 15 13 12 18 18 N 1.30671 * 120.00456 * 188.99135 * 17 15 13 19 19 Si 1.86805 * 119.99799 * 8.99083 * 17 15 13 20 20 H 1.48502 * 109.46874 * 274.69864 * 19 17 15 21 21 H 1.48498 * 109.47069 * 34.70172 * 19 17 15 22 22 H 1.48501 * 109.47075 * 154.70105 * 19 17 15 23 23 C 1.47074 * 118.24054 * 51.46051 * 12 11 10 24 24 C 1.46894 * 111.00097 * 294.30174 * 9 8 7 25 25 H 1.08996 * 109.47551 * 33.21321 * 3 2 1 26 26 H 1.09000 * 109.46939 * 273.21553 * 3 2 1 27 27 H 0.97001 * 119.99663 * 359.97438 * 6 4 3 28 28 H 1.09000 * 109.46608 * 59.99609 * 7 6 4 29 29 H 1.08995 * 109.46944 * 300.00362 * 7 6 4 30 30 H 1.08996 * 109.47500 * 59.99800 * 8 7 6 31 31 H 1.08999 * 109.46822 * 299.99519 * 8 7 6 32 32 H 1.08998 * 109.48928 * 67.29460 * 10 9 8 33 33 H 1.08994 * 109.51779 * 307.23057 * 10 9 8 34 34 H 1.09006 * 109.62663 * 186.46318 * 11 10 9 35 35 H 1.09003 * 109.62690 * 65.88283 * 11 10 9 36 36 H 0.96994 * 120.00332 * 180.02562 * 18 17 15 37 37 H 1.09005 * 109.62963 * 68.24497 * 23 12 11 38 38 H 1.08996 * 109.63328 * 188.82837 * 23 12 11 39 39 H 1.09004 * 109.49207 * 292.70423 * 24 9 8 40 40 H 1.08997 * 109.49271 * 52.78318 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1097 1.2693 -0.6403 5 8 2.3213 2.0916 -1.0561 6 7 4.4347 1.4900 -0.7508 7 6 4.9225 2.7229 -1.3737 8 6 6.4524 2.7237 -1.3736 9 7 6.9415 3.9598 -1.9988 10 6 8.3902 4.1093 -1.8069 11 6 8.8293 5.4883 -2.3107 12 7 8.3658 5.6483 -3.6973 13 6 9.2158 6.0301 -4.6712 14 8 10.3617 6.3321 -4.3947 15 6 8.7605 6.0814 -6.0614 16 1 7.7057 6.0249 -6.2866 17 6 9.6926 6.2037 -7.0994 18 7 9.2849 6.4258 -8.3208 19 14 11.5188 6.0494 -6.7378 20 1 12.0506 7.3666 -6.3049 21 1 11.7270 5.0521 -5.6575 22 1 12.2305 5.6070 -7.9638 23 6 6.9488 5.3868 -3.9920 24 6 6.5850 4.0062 -3.4230 25 1 2.9718 -0.8589 -0.5629 26 1 2.9713 -0.0568 1.0261 27 1 5.0653 0.8324 -0.4179 28 1 4.5582 3.5827 -0.8114 29 1 4.5595 2.7798 -2.3999 30 1 6.8163 1.8639 -1.9361 31 1 6.8157 2.6668 -0.3475 32 1 8.9131 3.3340 -2.3669 33 1 8.6288 4.0162 -0.7475 34 1 9.9164 5.5612 -2.2773 35 1 8.3880 6.2642 -1.6852 36 1 9.9304 6.5102 -9.0398 37 1 6.3301 6.1532 -3.5249 38 1 6.7918 5.3928 -5.0705 39 1 7.1331 3.2323 -3.9606 40 1 5.5139 3.8385 -3.5355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023382683.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:27 Heat of formation + Delta-G solvation = -37.152767 kcal Electronic energy + Delta-G solvation = -22916.914442 eV Core-core repulsion = 19345.869684 eV Total energy + Delta-G solvation = -3571.044758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.28757 -39.17334 -37.34428 -36.77378 -35.38017 -33.62353 -32.87536 -31.69223 -30.87328 -29.10955 -27.03047 -25.46395 -23.41499 -22.34772 -21.41266 -20.86242 -18.92500 -18.33907 -17.69872 -16.87900 -16.45853 -16.29036 -15.88425 -15.37059 -15.00307 -14.71421 -14.58513 -14.42432 -14.21279 -13.95718 -13.73726 -13.39000 -13.13005 -12.80357 -12.52917 -12.28168 -12.19672 -12.14254 -11.92744 -11.70634 -11.51791 -11.10085 -10.89762 -10.78626 -10.66512 -10.41364 -10.37171 -9.48349 -9.46441 -9.05767 -8.43342 -7.93312 -7.54782 -6.65214 -4.87115 2.05076 2.07484 2.41184 2.85416 3.41671 3.43488 3.46626 3.69726 3.87869 4.14318 4.23712 4.27859 4.53609 4.58125 4.59688 4.61486 4.81958 5.14057 5.18412 5.33068 5.41638 5.50851 5.58992 5.63674 5.70468 5.75674 5.88687 5.95358 6.07650 6.27248 6.35630 6.51868 6.89516 6.95954 7.02442 7.10750 7.17196 7.58789 7.69412 7.84576 8.28016 8.68583 9.10537 10.00077 10.35474 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.002667 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.795863 B =10495.799532 C =10979.544899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.216 3.784 3 C -0.043 4.043 4 C 0.517 3.483 5 O -0.525 6.525 6 N -0.724 5.724 7 C 0.119 3.881 8 C 0.045 3.955 9 N -0.534 5.534 10 C 0.047 3.953 11 C 0.124 3.876 12 N -0.635 5.635 13 C 0.554 3.446 14 O -0.617 6.617 15 C -0.534 4.534 16 H 0.091 0.909 17 C 0.101 3.899 18 N -0.827 5.827 19 Si 0.968 3.032 20 H -0.278 1.278 21 H -0.266 1.266 22 H -0.322 1.322 23 C 0.125 3.875 24 C 0.037 3.963 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.403 0.597 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.282 0.718 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.041 0.959 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.524 -14.510 16.442 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.103 4.103 3 C -0.085 4.085 4 C 0.301 3.699 5 O -0.401 6.401 6 N -0.377 5.377 7 C -0.004 4.004 8 C -0.084 4.084 9 N -0.259 5.259 10 C -0.082 4.082 11 C 0.000 4.000 12 N -0.370 5.370 13 C 0.363 3.637 14 O -0.510 6.510 15 C -0.569 4.569 16 H 0.109 0.891 17 C -0.117 4.117 18 N -0.457 5.457 19 Si 0.800 3.200 20 H -0.204 1.204 21 H -0.191 1.191 22 H -0.254 1.254 23 C 0.001 3.999 24 C -0.092 4.092 25 H 0.157 0.843 26 H 0.157 0.843 27 H 0.238 0.762 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.059 0.941 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.478 -13.298 16.297 22.679 hybrid contribution 1.792 -1.091 -0.156 2.104 sum -6.686 -14.389 16.141 22.634 Atomic orbital electron populations 1.81227 1.12637 1.07317 1.07701 1.28046 0.94293 0.93930 0.94037 1.19134 0.84056 0.99405 1.05943 1.19994 0.82645 0.87549 0.79755 1.90836 1.55060 1.46470 1.47695 1.45806 1.06530 1.23130 1.62191 1.21426 0.93720 0.86168 0.99101 1.22193 0.93800 0.92121 1.00266 1.61855 1.14658 1.34361 1.15030 1.22512 0.86496 0.98688 1.00475 1.21302 1.00544 0.94143 0.84058 1.47750 1.09180 1.72866 1.07154 1.18331 0.83360 0.76078 0.85886 1.90197 1.20490 1.57856 1.82415 1.20774 0.96376 1.51974 0.87791 0.89142 1.25768 1.02906 0.89138 0.93864 1.69558 1.38056 1.36893 1.01172 0.85215 0.79955 0.80552 0.74238 1.20433 1.19111 1.25384 1.21685 0.82653 0.93675 1.01901 1.22757 1.00543 0.99079 0.86815 0.84261 0.84264 0.76250 0.90078 0.90787 0.94262 0.90229 0.94464 0.90459 0.89374 0.92688 0.90776 0.92604 0.87982 0.94103 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.94 18.54 42.15 0.78 -4.15 16 2 C 0.22 1.76 14.67 -20.76 -0.30 1.46 16 3 C -0.04 -0.11 6.19 -30.67 -0.19 -0.30 16 4 C 0.52 3.61 7.81 -10.98 -0.09 3.52 16 5 O -0.53 -6.77 16.03 5.56 0.09 -6.68 16 6 N -0.72 -3.68 5.56 -60.30 -0.34 -4.02 16 7 C 0.12 0.98 5.61 -4.05 -0.02 0.95 16 8 C 0.04 0.37 5.08 -3.83 -0.02 0.35 16 9 N -0.53 -6.49 4.63 -234.03 -1.08 -7.57 16 10 C 0.05 0.62 5.62 -3.70 -0.02 0.60 16 11 C 0.12 2.15 6.58 -3.60 -0.02 2.12 16 12 N -0.63 -13.29 3.00 -173.84 -0.52 -13.81 16 13 C 0.55 14.45 7.32 -12.99 -0.10 14.35 16 14 O -0.62 -17.58 11.82 5.20 0.06 -17.51 16 15 C -0.53 -14.70 9.35 -35.64 -0.33 -15.03 16 16 H 0.09 2.46 6.02 -52.48 -0.32 2.14 16 17 C 0.10 2.85 5.52 -17.37 -0.10 2.75 16 18 N -0.83 -23.18 13.92 55.55 0.77 -22.41 16 19 Si 0.97 25.18 25.88 -169.99 -4.40 20.78 16 20 H -0.28 -7.47 7.11 56.52 0.40 -7.07 16 21 H -0.27 -7.20 6.62 56.52 0.37 -6.83 16 22 H -0.32 -7.94 7.11 56.52 0.40 -7.54 16 23 C 0.13 2.19 6.54 -3.37 -0.02 2.16 16 24 C 0.04 0.51 5.48 -3.47 -0.02 0.49 16 25 H 0.14 -0.13 8.14 -51.93 -0.42 -0.56 16 26 H 0.14 -0.16 8.14 -51.93 -0.42 -0.59 16 27 H 0.40 0.54 8.47 -40.82 -0.35 0.19 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.73 6.40 -51.93 -0.33 0.40 16 30 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 31 H 0.08 0.52 7.97 -51.93 -0.41 0.11 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.82 7.99 -51.93 -0.41 0.40 16 34 H 0.09 1.67 7.09 -51.93 -0.37 1.30 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.28 7.28 8.29 -40.82 -0.34 6.95 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.94 5.41 -51.93 -0.28 1.66 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.96 6.16 -51.93 -0.32 0.64 16 LS Contribution 334.89 15.07 5.05 5.05 Total: -1.00 -37.99 334.89 -6.15 -44.15 By element: Atomic # 1 Polarization: -1.90 SS G_CDS: -5.33 Total: -7.23 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: -1.23 Total: 13.42 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.39 Total: -51.97 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.15 Total: -24.19 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -4.40 Total: 20.78 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.99 -6.15 -44.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023382683.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.993 kcal (2) G-P(sol) polarization free energy of solvation -37.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds