Wall clock time and date at job start Fri Apr 10 2020 17:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 115.56325 * 2 1 4 4 C 1.53005 * 117.50076 * 214.30773 * 2 1 3 5 5 C 1.53002 * 60.00158 * 252.51030 * 4 2 1 6 6 H 1.08996 * 117.49565 * 107.51063 * 5 4 2 7 7 C 1.50699 * 117.49989 * 252.50691 * 5 4 2 8 8 O 1.20832 * 119.99528 * 68.61079 * 7 5 4 9 9 O 1.34227 * 119.99985 * 248.61358 * 7 5 4 10 10 C 1.45196 * 116.99590 * 180.02562 * 9 7 5 11 11 C 1.50708 * 109.46992 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99944 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00400 * 179.97438 * 11 10 9 14 14 C 1.46491 * 120.00401 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46957 * 89.99834 * 14 13 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.46512 * 119.99637 * 359.97438 * 13 11 10 24 24 C 1.52991 * 109.47033 * 270.00069 * 23 13 11 25 25 C 1.47202 * 109.46954 * 180.02562 * 24 23 13 26 26 N 9.16080 * 158.36628 * 66.79962 * 2 1 3 27 27 H 1.09006 * 109.47136 * 274.30861 * 1 2 3 28 28 H 1.08999 * 109.47356 * 34.30948 * 1 2 3 29 29 H 1.09000 * 109.47074 * 154.31536 * 1 2 3 30 30 H 1.08998 * 117.49538 * 145.01634 * 4 2 1 31 31 H 1.09003 * 117.49599 * 0.02562 * 4 2 1 32 32 H 1.08999 * 109.47418 * 59.99879 * 10 9 7 33 33 H 1.08998 * 109.47563 * 299.99535 * 10 9 7 34 34 H 1.09004 * 109.47166 * 330.00100 * 14 13 11 35 35 H 1.08994 * 109.47507 * 209.99806 * 14 13 11 36 36 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.46695 * 30.00158 * 23 13 11 38 38 H 1.09003 * 109.46868 * 149.99786 * 23 13 11 39 39 H 1.09001 * 109.47311 * 300.00158 * 24 23 13 40 40 H 1.09003 * 109.47524 * 60.00120 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2365 -1.1210 0.7651 6 1 1.6115 -1.8587 1.2683 7 6 3.5292 -0.7811 1.4609 8 8 3.9702 0.3423 1.4013 9 8 4.1909 -1.7264 2.1468 10 6 5.4288 -1.3275 2.7922 11 6 6.0256 -2.5111 3.5092 12 8 5.4627 -3.5850 3.4795 13 7 7.1849 -2.3764 4.1833 14 6 7.7647 -3.5268 4.8807 15 6 8.6860 -4.2683 3.9466 16 1 8.8260 -3.9174 2.9348 17 6 9.3552 -5.3911 4.3856 18 7 9.1850 -5.8182 5.6178 19 14 10.5031 -6.3057 3.2302 20 1 10.5200 -5.6270 1.9095 21 1 11.8747 -6.3142 3.7994 22 1 10.0277 -7.7026 3.0633 23 6 7.8651 -1.0793 4.2187 24 6 8.8354 -0.9800 3.0400 25 6 9.5194 0.3230 3.0759 26 7 10.0455 1.3305 3.1042 27 1 -0.3634 0.0772 1.0248 28 1 -0.3634 0.8488 -0.5792 29 1 -0.3633 -0.9261 -0.4454 30 1 3.1715 -0.8751 -1.2683 31 1 1.6112 -1.8583 -1.2686 32 1 5.2247 -0.5333 3.5103 33 1 6.1305 -0.9661 2.0405 34 1 6.9666 -4.1930 5.2085 35 1 8.3277 -3.1804 5.7472 36 1 9.6555 -6.6083 5.9265 37 1 7.1271 -0.2800 4.1501 38 1 8.4178 -0.9843 5.1534 39 1 9.5734 -1.7793 3.1085 40 1 8.2827 -1.0750 2.1053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060756296.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:31 Heat of formation + Delta-G solvation = -70.758681 kcal Electronic energy + Delta-G solvation = -23076.362319 eV Core-core repulsion = 19471.567547 eV Total energy + Delta-G solvation = -3604.794771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.77999 -39.30127 -37.74358 -36.79066 -36.11628 -35.25894 -32.91777 -30.84751 -29.77092 -28.93221 -26.94392 -24.76002 -23.94858 -22.75712 -21.39359 -20.26191 -18.89462 -18.09065 -17.68972 -16.83824 -16.59370 -16.34393 -16.19008 -15.53079 -14.86407 -14.62864 -14.40703 -14.33412 -13.87661 -13.66577 -13.43442 -13.05676 -12.86877 -12.62374 -12.43045 -12.36431 -12.21171 -12.07554 -11.79610 -11.69057 -11.34338 -11.12251 -10.89557 -10.79840 -10.73395 -10.61961 -10.56611 -10.42514 -10.22494 -9.72397 -9.15419 -8.53117 -7.98668 -6.14728 -4.20188 1.96438 2.31553 2.78306 2.90226 3.12291 3.24719 3.33630 3.35264 3.42440 3.62213 4.17364 4.34763 4.35655 4.40992 4.50876 4.78787 4.83708 4.95045 4.99353 5.07193 5.16796 5.21485 5.23033 5.31532 5.39362 5.41667 5.50029 5.63233 5.69133 5.87683 5.94602 6.11431 6.29114 6.83244 7.26395 7.32824 7.65642 7.66162 7.80445 8.06938 8.10438 8.69882 8.86105 9.45656 10.93515 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.003762 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.848657 B = 7440.113622 C = 8554.786464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 H 0.119 0.881 4 C -0.144 4.144 5 C -0.166 4.166 6 H 0.138 0.862 7 C 0.492 3.508 8 O -0.512 6.512 9 O -0.323 6.323 10 C 0.045 3.955 11 C 0.510 3.490 12 O -0.508 6.508 13 N -0.593 5.593 14 C 0.245 3.755 15 C -0.532 4.532 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.891 5.891 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.118 3.882 24 C -0.054 4.054 25 C 0.218 3.782 26 N -0.449 5.449 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.039 0.961 36 H 0.264 0.736 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.133 0.867 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.680 10.266 -8.730 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.139 4.139 3 H 0.137 0.863 4 C -0.181 4.181 5 C -0.185 4.185 6 H 0.156 0.844 7 C 0.335 3.665 8 O -0.401 6.401 9 O -0.238 6.238 10 C -0.032 4.032 11 C 0.294 3.706 12 O -0.383 6.383 13 N -0.326 5.326 14 C 0.127 3.873 15 C -0.571 4.571 16 H 0.080 0.920 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.008 4.008 24 C -0.095 4.095 25 C -0.100 4.100 26 N -0.127 5.127 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.151 0.849 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.983 11.335 -8.543 18.576 hybrid contribution 0.820 -0.903 -0.499 1.318 sum -11.163 10.432 -9.043 17.754 Atomic orbital electron populations 1.21420 0.91740 1.02505 1.02507 1.22521 0.95661 0.94987 1.00771 0.86297 1.23212 1.03354 1.01305 0.90192 1.21825 0.94853 1.06025 0.95812 0.84419 1.22660 0.85028 0.82757 0.76054 1.90656 1.67794 1.22454 1.59233 1.86562 1.35304 1.40713 1.61208 1.23005 0.84724 0.97709 0.97766 1.19723 0.81877 0.88728 0.80263 1.90743 1.60496 1.27590 1.59443 1.48177 1.21102 1.11731 1.51607 1.19444 0.94123 0.81938 0.91789 1.21446 1.25764 1.11223 0.98622 0.91975 1.24926 0.96912 0.96870 0.95196 1.69931 1.42550 1.24509 1.15961 0.86475 0.80272 0.79971 0.80904 1.19671 1.20992 1.20861 1.21362 0.95066 0.86078 0.98326 1.19985 0.99877 0.87851 1.01805 1.29249 0.93319 0.94508 0.92921 1.81230 1.10192 1.12341 1.08930 0.91676 0.91463 0.92020 0.87934 0.87045 0.88590 0.88584 0.93407 0.94322 0.92627 0.90877 0.88869 0.84880 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.19 37.15 0.38 -0.36 16 2 C -0.12 -0.99 5.92 -90.62 -0.54 -1.53 16 3 H 0.12 1.09 7.67 -51.93 -0.40 0.69 16 4 C -0.14 -1.15 9.88 -26.73 -0.26 -1.42 16 5 C -0.17 -1.67 6.02 -91.77 -0.55 -2.22 16 6 H 0.14 1.22 8.14 -51.93 -0.42 0.80 16 7 C 0.49 6.65 7.74 36.00 0.28 6.92 16 8 O -0.51 -7.70 16.01 -18.75 -0.30 -8.00 16 9 O -0.32 -5.04 9.75 -45.89 -0.45 -5.49 16 10 C 0.05 0.66 4.50 36.01 0.16 0.82 16 11 C 0.51 9.51 7.75 -10.98 -0.09 9.42 16 12 O -0.51 -11.97 16.08 -14.10 -0.23 -12.20 16 13 N -0.59 -10.63 2.46 -175.06 -0.43 -11.06 16 14 C 0.25 5.64 5.20 -5.20 -0.03 5.62 16 15 C -0.53 -13.36 8.92 -34.44 -0.31 -13.67 16 16 H 0.06 1.51 7.42 -52.49 -0.39 1.12 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -24.81 13.29 55.43 0.74 -24.07 16 19 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 C 0.12 1.54 5.21 -4.04 -0.02 1.52 16 24 C -0.05 -0.66 6.03 -29.52 -0.18 -0.84 16 25 C 0.22 2.92 15.44 -20.73 -0.32 2.60 16 26 N -0.45 -7.10 18.54 42.19 0.78 -6.31 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.32 7.90 -51.93 -0.41 -0.09 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.11 0.68 8.05 -51.93 -0.42 0.26 16 32 H 0.10 1.19 7.40 -51.93 -0.38 0.80 16 33 H 0.10 1.21 7.18 -51.93 -0.37 0.83 16 34 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 35 H 0.04 0.89 7.89 -51.93 -0.41 0.48 16 36 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 38 H 0.09 1.17 7.89 -51.93 -0.41 0.76 16 39 H 0.13 1.83 7.26 -51.93 -0.38 1.45 16 40 H 0.10 1.13 7.22 -51.93 -0.38 0.75 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -32.97 355.86 -6.60 -39.57 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.49 Total: -1.66 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -1.57 Total: 8.44 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 1.09 Total: -41.45 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.97 Total: -25.69 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.97 -6.60 -39.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060756296.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.186 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds