Wall clock time and date at job start Fri Apr 10 2020 17:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36095 * 116.99713 * 2 1 4 4 C 1.38533 * 120.00222 * 359.72325 * 3 2 1 5 5 C 1.38211 * 120.07396 * 179.76644 * 4 3 2 6 6 C 1.38870 * 120.06698 * 0.51316 * 5 4 3 7 7 N 1.39920 * 119.99796 * 179.72224 * 6 5 4 8 8 C 1.46503 * 119.99665 * 180.02562 * 7 6 5 9 9 C 1.46496 * 120.00376 * 0.02562 * 7 6 5 10 10 C 1.50701 * 109.47040 * 89.99771 * 9 7 6 11 11 O 1.21288 * 120.00536 * 359.97438 * 10 9 7 12 12 N 1.34786 * 119.99526 * 179.97438 * 10 9 7 13 13 C 1.37092 * 119.99676 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00179 * 359.97438 * 13 12 10 15 15 C 1.38948 * 119.99939 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99989 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00238 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47016 * 59.99336 * 17 15 13 19 19 H 1.48497 * 109.47439 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.46814 * 300.00072 * 17 15 13 21 21 C 1.38823 * 119.99400 * 359.73922 * 6 5 4 22 22 C 1.38517 * 119.93481 * 0.02562 * 21 6 5 23 23 O 1.35990 * 120.03449 * 180.02562 * 22 21 6 24 24 C 1.42893 * 117.00160 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47043 * 59.99755 * 1 2 3 26 26 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47144 * 300.00156 * 1 2 3 28 28 H 1.08000 * 119.95949 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.96476 * 180.23182 * 5 4 3 30 30 H 1.09000 * 109.46907 * 89.99905 * 8 7 6 31 31 H 1.09000 * 109.47162 * 209.99621 * 8 7 6 32 32 H 1.09000 * 109.47454 * 330.00447 * 8 7 6 33 33 H 1.09000 * 109.47359 * 209.99988 * 9 7 6 34 34 H 1.09004 * 109.47016 * 329.99837 * 9 7 6 35 35 H 0.96992 * 120.00066 * 0.02562 * 12 10 9 36 36 H 0.97002 * 119.99837 * 180.02562 * 16 15 13 37 37 H 1.08006 * 120.03120 * 180.02562 * 21 6 5 38 38 H 1.08998 * 109.47180 * 180.02562 * 24 23 22 39 39 H 1.08999 * 109.47069 * 299.99970 * 24 23 22 40 40 H 1.08995 * 109.47276 * 59.99815 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 1.2923 2.3745 -0.0058 5 6 1.9181 3.6068 -0.0009 6 6 3.3047 3.6829 -0.0010 7 7 3.9368 4.9312 -0.0019 8 6 5.3996 5.0115 -0.0025 9 6 3.1359 6.1578 -0.0023 10 6 2.8618 6.5792 1.4184 11 8 3.2926 5.9195 2.3406 12 7 2.1378 7.6892 1.6643 13 6 1.8889 8.0728 2.9567 14 1 2.2725 7.4854 3.7778 15 6 1.1422 9.2168 3.2102 16 7 0.6750 9.9313 2.2111 17 14 0.8035 9.7401 4.9712 18 1 2.0901 9.9892 5.6696 19 1 -0.0080 10.9837 4.9708 20 1 0.0598 8.6632 5.6732 21 6 4.0636 2.5204 -0.0005 22 6 3.4363 1.2855 -0.0004 23 8 4.1777 0.1454 0.0006 24 6 5.5987 0.2957 0.0011 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2138 2.3172 -0.0099 29 1 1.3282 4.5114 -0.0017 30 1 5.7620 5.0308 -1.0304 31 1 5.7139 5.9204 0.5106 32 1 5.8115 4.1430 0.5115 33 1 3.6822 6.9484 -0.5168 34 1 2.1919 5.9752 -0.5157 35 1 1.7930 8.2165 0.9269 36 1 0.1540 10.7302 2.3882 37 1 5.1421 2.5790 -0.0001 38 1 6.0681 -0.6881 0.0014 39 1 5.9063 0.8443 -0.8891 40 1 5.9057 0.8455 0.8907 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076669308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:50 Heat of formation + Delta-G solvation = -63.366795 kcal Electronic energy + Delta-G solvation = -23612.503311 eV Core-core repulsion = 20008.029076 eV Total energy + Delta-G solvation = -3604.474235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.37233 -38.67651 -38.21588 -37.23358 -34.77926 -33.83403 -31.31521 -30.39489 -29.60219 -28.30158 -27.16970 -27.12179 -25.04736 -23.92562 -21.82782 -20.94496 -19.30573 -18.46496 -17.92061 -16.89375 -16.58674 -16.17216 -15.88428 -15.83988 -15.10080 -14.72801 -14.59085 -14.49835 -14.36150 -13.78070 -13.63888 -13.51195 -12.70666 -12.61620 -12.46018 -12.30786 -12.00257 -11.67639 -11.58266 -11.52120 -11.23275 -11.09118 -11.05499 -11.03999 -10.64046 -10.46868 -10.25042 -9.53520 -9.20451 -8.48946 -8.09909 -8.00583 -6.68761 -6.44057 -3.86063 1.58057 1.90126 3.17383 3.23555 3.25959 3.31512 3.43301 3.57785 3.84145 4.05907 4.16800 4.92889 5.00793 5.07978 5.14216 5.16805 5.18247 5.26609 5.31152 5.35009 5.47416 5.50046 5.53270 5.61369 5.64316 5.65886 5.78104 5.84239 5.97074 6.07972 6.24587 6.46055 6.62235 6.76719 7.21916 7.50925 7.51707 7.63556 7.89633 8.02193 8.57450 9.14482 9.49542 10.01092 10.72169 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019230 B = 0.003714 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.699573 B = 7537.408890 C = 8293.016259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.029 3.971 4 C -0.119 4.119 5 C -0.187 4.187 6 C 0.242 3.758 7 N -0.603 5.603 8 C 0.102 3.898 9 C 0.111 3.889 10 C 0.417 3.583 11 O -0.581 6.581 12 N -0.562 5.562 13 C -0.300 4.300 14 H 0.101 0.899 15 C 0.024 3.976 16 N -0.901 5.901 17 Si 0.930 3.070 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.253 4.253 22 C 0.142 3.858 23 O -0.308 6.308 24 C 0.028 3.972 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.131 0.869 29 H 0.127 0.873 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.134 0.866 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.329 -13.409 -9.140 16.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C -0.017 4.017 4 C -0.139 4.139 5 C -0.210 4.210 6 C 0.139 3.861 7 N -0.312 5.312 8 C -0.042 4.042 9 C -0.016 4.016 10 C 0.201 3.799 11 O -0.465 6.465 12 N -0.199 5.199 13 C -0.430 4.430 14 H 0.119 0.881 15 C -0.178 4.178 16 N -0.542 5.542 17 Si 0.757 3.243 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.199 1.199 21 C -0.276 4.276 22 C 0.096 3.904 23 O -0.222 6.222 24 C -0.067 4.067 25 H 0.068 0.932 26 H 0.111 0.889 27 H 0.069 0.931 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.151 0.849 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.637 -13.885 -8.519 16.937 hybrid contribution -0.468 1.187 0.591 1.406 sum 4.170 -12.698 -7.928 15.540 Atomic orbital electron populations 1.22937 0.79544 1.03145 1.00955 1.86107 1.20135 1.26161 1.90497 1.17875 0.88827 0.84928 1.10034 1.20749 0.99369 0.90926 1.02815 1.20431 0.92580 0.97705 1.10255 1.17389 0.91251 0.84751 0.92693 1.45910 1.04683 1.01934 1.78712 1.21541 0.79775 1.02818 1.00021 1.21240 0.96992 0.86901 0.96486 1.20581 0.84618 0.83828 0.90874 1.90538 1.55296 1.55163 1.45516 1.41897 1.46492 1.22619 1.08864 1.19640 1.30901 1.08092 0.84345 0.88095 1.25247 0.96753 0.96177 0.99592 1.69597 1.36220 1.17130 1.31277 0.85935 0.78566 0.77871 0.81970 1.19925 1.20915 1.19877 1.20416 0.99779 0.89926 1.17493 1.17850 0.87922 0.85161 0.99453 1.86138 1.18379 1.28595 1.89045 1.23001 0.79188 1.03307 1.01245 0.93200 0.88905 0.93060 0.85103 0.85564 0.93728 0.91374 0.91904 0.89198 0.89122 0.77462 0.91774 0.84889 0.88634 0.92917 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -4.80 10.28 -34.65 -0.36 -5.15 16 3 C 0.03 0.48 6.70 -39.14 -0.26 0.21 16 4 C -0.12 -1.85 9.03 -39.48 -0.36 -2.20 16 5 C -0.19 -3.17 9.21 -39.36 -0.36 -3.53 16 6 C 0.24 4.14 6.55 -83.72 -0.55 3.59 16 7 N -0.60 -10.05 2.50 -180.96 -0.45 -10.50 16 8 C 0.10 1.39 10.19 59.85 0.61 2.00 16 9 C 0.11 1.91 5.64 -5.20 -0.03 1.88 16 10 C 0.42 9.61 7.85 -10.98 -0.09 9.52 16 11 O -0.58 -15.77 16.01 5.55 0.09 -15.68 16 12 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 13 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 14 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 15 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 16 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 17 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 C -0.25 -3.95 8.19 -39.26 -0.32 -4.27 16 22 C 0.14 2.30 6.70 -39.14 -0.26 2.04 16 23 O -0.31 -4.60 10.28 -34.32 -0.35 -4.95 16 24 C 0.03 0.28 9.81 101.05 0.99 1.28 16 25 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.52 7.67 -51.93 -0.40 0.13 16 28 H 0.13 1.69 6.29 -52.49 -0.33 1.36 16 29 H 0.13 2.12 6.13 -52.49 -0.32 1.80 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 32 H 0.06 0.81 6.20 -51.93 -0.32 0.49 16 33 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 34 H 0.09 1.40 6.19 -51.93 -0.32 1.08 16 35 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 36 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.13 1.77 4.37 -52.48 -0.23 1.54 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 40 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 LS Contribution 336.90 15.07 5.08 5.08 Total: -1.00 -33.87 336.90 -5.29 -39.16 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.06 Total: 9.55 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 0.12 Total: 3.94 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.21 Total: -47.85 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.62 Total: -25.79 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.87 -5.29 -39.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076669308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.208 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds