Wall clock time and date at job start Fri Apr 10 2020 17:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36095 * 116.99713 * 2 1 4 4 C 1.38533 * 120.00222 * 359.72325 * 3 2 1 5 5 C 1.38211 * 120.07396 * 179.76644 * 4 3 2 6 6 C 1.38870 * 120.06698 * 0.51316 * 5 4 3 7 7 N 1.39920 * 119.99796 * 179.72224 * 6 5 4 8 8 C 1.46503 * 119.99665 * 180.02562 * 7 6 5 9 9 C 1.46496 * 120.00376 * 0.02562 * 7 6 5 10 10 C 1.50701 * 109.47040 * 89.99771 * 9 7 6 11 11 O 1.21288 * 120.00536 * 359.97438 * 10 9 7 12 12 N 1.34786 * 119.99526 * 179.97438 * 10 9 7 13 13 C 1.37092 * 119.99676 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00179 * 359.97438 * 13 12 10 15 15 C 1.38948 * 119.99939 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99989 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00238 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47016 * 59.99336 * 17 15 13 19 19 H 1.48497 * 109.47439 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.46814 * 300.00072 * 17 15 13 21 21 C 1.38823 * 119.99400 * 359.73922 * 6 5 4 22 22 C 1.38517 * 119.93481 * 0.02562 * 21 6 5 23 23 O 1.35990 * 120.03449 * 180.02562 * 22 21 6 24 24 C 1.42893 * 117.00160 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47043 * 59.99755 * 1 2 3 26 26 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47144 * 300.00156 * 1 2 3 28 28 H 1.08000 * 119.95949 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.96476 * 180.23182 * 5 4 3 30 30 H 1.09000 * 109.46907 * 89.99905 * 8 7 6 31 31 H 1.09000 * 109.47162 * 209.99621 * 8 7 6 32 32 H 1.09000 * 109.47454 * 330.00447 * 8 7 6 33 33 H 1.09000 * 109.47359 * 209.99988 * 9 7 6 34 34 H 1.09004 * 109.47016 * 329.99837 * 9 7 6 35 35 H 0.96992 * 120.00066 * 0.02562 * 12 10 9 36 36 H 0.97002 * 119.99837 * 180.02562 * 16 15 13 37 37 H 1.08006 * 120.03120 * 180.02562 * 21 6 5 38 38 H 1.08998 * 109.47180 * 180.02562 * 24 23 22 39 39 H 1.08999 * 109.47069 * 299.99970 * 24 23 22 40 40 H 1.08995 * 109.47276 * 59.99815 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2126 0.0000 4 6 1.2923 2.3745 -0.0058 5 6 1.9181 3.6068 -0.0009 6 6 3.3047 3.6829 -0.0010 7 7 3.9368 4.9312 -0.0019 8 6 5.3996 5.0115 -0.0025 9 6 3.1359 6.1578 -0.0023 10 6 2.8618 6.5792 1.4184 11 8 3.2926 5.9195 2.3406 12 7 2.1378 7.6892 1.6643 13 6 1.8889 8.0728 2.9567 14 1 2.2725 7.4854 3.7778 15 6 1.1422 9.2168 3.2102 16 7 0.6750 9.9313 2.2111 17 14 0.8035 9.7401 4.9712 18 1 2.0901 9.9892 5.6696 19 1 -0.0080 10.9837 4.9708 20 1 0.0598 8.6632 5.6732 21 6 4.0636 2.5204 -0.0005 22 6 3.4363 1.2855 -0.0004 23 8 4.1777 0.1454 0.0006 24 6 5.5987 0.2957 0.0011 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2138 2.3172 -0.0099 29 1 1.3282 4.5114 -0.0017 30 1 5.7620 5.0308 -1.0304 31 1 5.7139 5.9204 0.5106 32 1 5.8115 4.1430 0.5115 33 1 3.6822 6.9484 -0.5168 34 1 2.1919 5.9752 -0.5157 35 1 1.7930 8.2165 0.9269 36 1 0.1540 10.7302 2.3882 37 1 5.1421 2.5790 -0.0001 38 1 6.0681 -0.6881 0.0014 39 1 5.9063 0.8443 -0.8891 40 1 5.9057 0.8455 0.8907 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076669308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:50 Heat of formation + Delta-G solvation = -86.491568 kcal Electronic energy + Delta-G solvation = -23613.506076 eV Core-core repulsion = 20008.029076 eV Total energy + Delta-G solvation = -3605.477000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.53203 -40.29573 -39.28125 -38.65154 -36.18314 -35.65605 -33.29909 -31.62829 -30.75429 -29.56396 -28.29721 -27.99379 -26.75234 -25.29742 -23.01658 -22.22226 -20.98440 -19.96263 -19.53477 -18.05693 -17.89244 -17.74261 -17.09142 -16.92568 -16.57254 -16.05307 -16.03020 -15.66842 -15.45689 -15.32165 -15.23647 -15.04732 -14.00099 -13.73539 -13.66221 -13.50624 -13.45083 -13.14651 -13.00979 -12.78494 -12.63912 -12.44432 -12.21537 -12.15701 -12.13330 -11.99791 -11.80991 -11.51041 -10.66051 -10.05447 -10.01651 -9.35060 -8.47847 -7.91024 -5.95671 0.38018 0.66547 1.37889 1.40495 1.50770 2.03781 2.08114 2.31320 2.42006 2.55271 2.83738 3.19427 3.31397 3.81810 4.04410 4.12822 4.24821 4.31103 4.35402 4.42252 4.42722 4.46686 4.47518 4.50153 4.55423 4.62235 4.74149 4.75544 4.78010 4.89968 4.94109 5.22734 5.39807 5.40308 5.58933 5.95704 6.17250 6.29415 6.45379 6.60873 6.76323 7.12632 7.55833 8.11723 8.69520 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.019230 B = 0.003714 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.699573 B = 7537.408890 C = 8293.016259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.333 6.333 3 C 0.017 3.983 4 C -0.120 4.120 5 C -0.208 4.208 6 C 0.222 3.778 7 N -0.610 5.610 8 C 0.097 3.903 9 C 0.122 3.878 10 C 0.417 3.583 11 O -0.626 6.626 12 N -0.570 5.570 13 C -0.334 4.334 14 H 0.074 0.926 15 C -0.009 4.009 16 N -0.917 5.917 17 Si 0.988 3.012 18 H -0.273 1.273 19 H -0.269 1.269 20 H -0.274 1.274 21 C -0.251 4.251 22 C 0.132 3.868 23 O -0.325 6.325 24 C 0.018 3.982 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.053 0.947 28 H 0.152 0.848 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.398 0.602 36 H 0.278 0.722 37 H 0.154 0.846 38 H 0.121 0.879 39 H 0.066 0.934 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.550 -13.787 -9.899 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C -0.029 4.029 4 C -0.139 4.139 5 C -0.231 4.231 6 C 0.120 3.880 7 N -0.320 5.320 8 C -0.046 4.046 9 C -0.005 4.005 10 C 0.204 3.796 11 O -0.512 6.512 12 N -0.208 5.208 13 C -0.463 4.463 14 H 0.092 0.908 15 C -0.209 4.209 16 N -0.558 5.558 17 Si 0.812 3.188 18 H -0.198 1.198 19 H -0.193 1.193 20 H -0.200 1.200 21 C -0.274 4.274 22 C 0.085 3.915 23 O -0.239 6.239 24 C -0.076 4.076 25 H 0.081 0.919 26 H 0.136 0.864 27 H 0.072 0.928 28 H 0.169 0.831 29 H 0.139 0.861 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.140 0.860 34 H 0.127 0.873 35 H 0.232 0.768 36 H 0.088 0.912 37 H 0.171 0.829 38 H 0.140 0.860 39 H 0.085 0.915 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.864 -14.268 -9.310 17.718 hybrid contribution -0.509 1.173 0.809 1.514 sum 4.355 -13.095 -8.501 16.208 Atomic orbital electron populations 1.23236 0.77386 1.05104 1.01666 1.86080 1.22464 1.25809 1.90429 1.18141 0.89374 0.85491 1.09901 1.20951 1.00477 0.90330 1.02154 1.20554 0.92932 0.98079 1.11515 1.17637 0.91595 0.85408 0.93404 1.46080 1.05683 1.01461 1.78784 1.21728 0.78287 1.02533 1.02007 1.21199 0.98787 0.88181 0.92355 1.21716 0.82500 0.82321 0.93079 1.90503 1.56611 1.56246 1.47850 1.41948 1.47225 1.23473 1.08124 1.19563 1.32648 1.09021 0.85114 0.90781 1.25958 0.95965 0.95629 1.03331 1.69650 1.36136 1.17305 1.32718 0.85063 0.78436 0.77805 0.77489 1.19809 1.19311 1.19969 1.20596 1.00761 0.89307 1.16773 1.18101 0.88418 0.85760 0.99209 1.86118 1.20596 1.28329 1.88852 1.23324 0.76931 1.05325 1.02002 0.91906 0.86436 0.92849 0.83088 0.86112 0.90448 0.92377 0.91473 0.86015 0.87277 0.76826 0.91245 0.82912 0.86050 0.91492 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.33 -9.89 10.28 -80.66 -0.83 -10.72 16 3 C 0.02 0.54 6.70 22.56 0.15 0.69 16 4 C -0.12 -3.67 9.03 22.33 0.20 -3.46 16 5 C -0.21 -7.02 9.21 22.41 0.21 -6.82 16 6 C 0.22 7.45 6.55 38.14 0.25 7.70 16 7 N -0.61 -19.64 2.50 -726.43 -1.82 -21.45 16 8 C 0.10 2.48 10.19 127.77 1.30 3.78 16 9 C 0.12 4.07 5.64 85.63 0.48 4.55 16 10 C 0.42 19.43 7.85 87.66 0.69 20.12 16 11 O -0.63 -34.74 16.01 -3.05 -0.05 -34.79 16 12 N -0.57 -28.60 5.29 -306.98 -1.62 -30.23 16 13 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 14 H 0.07 4.51 7.16 -2.91 -0.02 4.48 16 15 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 16 N -0.92 -48.72 13.05 21.66 0.28 -48.44 16 17 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 C -0.25 -7.61 8.19 22.48 0.18 -7.42 16 22 C 0.13 4.17 6.70 22.55 0.15 4.32 16 23 O -0.33 -9.36 10.28 -79.48 -0.82 -10.18 16 24 C 0.02 0.34 9.81 113.37 1.11 1.45 16 25 H 0.06 1.07 7.65 -2.39 -0.02 1.06 16 26 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 1.03 7.67 -2.39 -0.02 1.01 16 28 H 0.15 3.77 6.29 -2.91 -0.02 3.76 16 29 H 0.12 4.08 6.13 -2.91 -0.02 4.06 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.59 8.07 -2.39 -0.02 1.57 16 32 H 0.07 1.63 6.20 -2.39 -0.01 1.62 16 33 H 0.12 3.29 8.07 -2.39 -0.02 3.27 16 34 H 0.11 3.25 6.19 -2.39 -0.01 3.23 16 35 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 36 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 37 H 0.15 3.81 4.37 -2.91 -0.01 3.80 16 38 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.04 7.66 -2.39 -0.02 1.03 16 40 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 Total: -1.00 -73.87 336.90 4.65 -69.23 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.35 Total: 33.33 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 7.12 Total: 8.44 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -3.16 Total: -100.12 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -1.69 Total: -55.68 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.87 4.65 -69.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076669308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.264 kcal (2) G-P(sol) polarization free energy of solvation -73.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds