Wall clock time and date at job start Fri Apr 10 2020 17:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99497 * 2 1 4 4 C 1.52998 * 109.46825 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47361 * 64.99861 * 4 3 2 6 6 C 1.46503 * 119.99726 * 269.99556 * 5 4 3 7 7 C 1.50690 * 109.47303 * 270.00284 * 6 5 4 8 8 H 1.08006 * 120.00337 * 359.97438 * 7 6 5 9 9 C 1.37885 * 120.00195 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00317 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99410 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47335 * 90.00344 * 11 9 7 13 13 H 1.48505 * 109.46903 * 210.00171 * 11 9 7 14 14 H 1.48504 * 109.47400 * 329.99810 * 11 9 7 15 15 C 1.34778 * 120.00035 * 90.00374 * 5 4 3 16 16 O 1.21273 * 119.99772 * 180.02562 * 15 5 4 17 17 C 1.50695 * 119.99864 * 359.97438 * 15 5 4 18 18 N 1.46507 * 109.47098 * 180.02562 * 17 15 5 19 19 C 1.35763 * 119.62574 * 89.99849 * 18 17 15 20 20 C 1.35346 * 120.69997 * 180.27933 * 19 18 17 21 21 C 1.40202 * 119.94860 * 359.43664 * 20 19 18 22 22 C 1.36395 * 119.26120 * 0.57668 * 21 20 19 23 23 C 1.34664 * 119.61981 * 270.02248 * 18 17 15 24 24 O 1.22055 * 119.98569 * 359.97438 * 23 18 17 25 25 H 1.09001 * 109.47112 * 60.00678 * 1 2 3 26 26 H 1.08998 * 109.46856 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46818 * 300.00007 * 1 2 3 28 28 H 1.08995 * 109.47182 * 59.99908 * 3 2 1 29 29 H 1.09008 * 109.47009 * 299.99537 * 3 2 1 30 30 H 1.09000 * 109.46883 * 304.99592 * 4 3 2 31 31 H 1.09009 * 109.47046 * 185.00246 * 4 3 2 32 32 H 1.09001 * 109.46822 * 30.00326 * 6 5 4 33 33 H 1.08998 * 109.46560 * 150.00099 * 6 5 4 34 34 H 0.97005 * 120.00006 * 179.97438 * 10 9 7 35 35 H 1.08991 * 109.47470 * 60.00573 * 17 15 5 36 36 H 1.09001 * 109.47078 * 300.00121 * 17 15 5 37 37 H 1.08002 * 119.64669 * 359.97438 * 19 18 17 38 38 H 1.07996 * 120.02410 * 179.69320 * 20 19 18 39 39 H 1.08002 * 120.36615 * 180.31976 * 21 20 19 40 40 H 1.08002 * 120.34395 * 179.74309 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1054 -0.8920 -1.3426 7 6 5.5010 -1.2976 -0.9447 8 1 6.2199 -0.5456 -0.6543 9 6 5.8608 -2.6286 -0.9524 10 7 7.0790 -2.9825 -0.6056 11 14 4.6178 -3.9291 -1.4553 12 1 4.7024 -4.1542 -2.9207 13 1 4.9125 -5.1977 -0.7418 14 1 3.2503 -3.4693 -1.1032 15 6 4.2616 1.3338 -2.3218 16 8 4.6256 0.8203 -3.3584 17 6 4.1278 2.8320 -2.2293 18 7 4.4929 3.4351 -3.5136 19 6 3.5378 3.6330 -4.4579 20 6 3.8519 4.1832 -5.6539 21 6 5.1737 4.5658 -5.9227 22 6 6.1319 4.3657 -4.9730 23 6 5.7724 3.7863 -3.7442 24 8 6.6198 3.6020 -2.8853 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8464 -0.8901 30 1 3.8514 0.5684 0.8410 31 1 3.9785 2.1767 0.0890 32 1 3.3854 -1.3628 -0.6732 33 1 3.9122 -1.2113 -2.3667 34 1 7.3320 -3.9190 -0.6106 35 1 4.7897 3.2085 -1.4496 36 1 3.0969 3.0904 -1.9870 37 1 2.5173 3.3439 -4.2543 38 1 3.0843 4.3312 -6.3990 39 1 5.4309 5.0102 -6.8729 40 1 7.1564 4.6501 -5.1631 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103215068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:03 Heat of formation + Delta-G solvation = -62.267580 kcal Electronic energy + Delta-G solvation = -24246.945391 eV Core-core repulsion = 20642.518822 eV Total energy + Delta-G solvation = -3604.426570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.32910 -39.14853 -37.68597 -36.73526 -35.10825 -34.40042 -32.57144 -30.08638 -29.83523 -28.92709 -27.04895 -26.13255 -23.93197 -23.06437 -22.81585 -21.89023 -18.88415 -17.55087 -17.31302 -17.10236 -16.87703 -16.38468 -16.18471 -15.73408 -15.27146 -15.08209 -14.77841 -14.40042 -14.28200 -14.06078 -13.78108 -13.20525 -12.57385 -12.56472 -12.28512 -12.17345 -12.02585 -11.87475 -11.82215 -11.70873 -11.53673 -11.03915 -10.86229 -10.43504 -10.34643 -10.09074 -9.80081 -9.64968 -9.47500 -9.12200 -8.50657 -7.88426 -7.78139 -6.00285 -3.98627 0.88763 1.97640 2.59817 3.10682 3.35114 3.40846 3.43967 3.61480 3.82394 3.89932 4.47247 4.52110 4.61156 4.73340 4.87064 5.02467 5.10495 5.22403 5.23257 5.27800 5.31383 5.33088 5.33288 5.39485 5.43688 5.52058 5.66599 5.96596 6.06735 6.10654 6.28561 6.53433 6.84691 7.00789 7.15242 7.20245 7.29560 7.69418 8.13053 8.20400 8.52663 8.80760 9.04416 9.59532 11.13250 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.005486 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.350371 B = 5102.482022 C = 6334.156708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.043 3.957 4 C 0.106 3.894 5 N -0.579 5.579 6 C 0.222 3.778 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.898 5.898 11 Si 0.874 3.126 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.262 1.262 15 C 0.495 3.505 16 O -0.525 6.525 17 C 0.067 3.933 18 N -0.477 5.477 19 C 0.146 3.854 20 C -0.240 4.240 21 C -0.019 4.019 22 C -0.240 4.240 23 C 0.517 3.483 24 O -0.543 6.543 25 H 0.036 0.964 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.032 0.968 34 H 0.264 0.736 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.157 0.843 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.529 16.400 -3.914 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.035 4.035 4 C -0.018 4.018 5 N -0.310 5.310 6 C 0.101 3.899 7 C -0.568 4.568 8 H 0.092 0.908 9 C -0.129 4.129 10 N -0.537 5.537 11 Si 0.701 3.299 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.187 1.187 15 C 0.279 3.721 16 O -0.401 6.401 17 C -0.058 4.058 18 N -0.187 5.187 19 C 0.019 3.981 20 C -0.263 4.263 21 C -0.041 4.041 22 C -0.262 4.262 23 C 0.319 3.681 24 O -0.424 6.424 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.144 0.856 36 H 0.129 0.871 37 H 0.174 0.826 38 H 0.160 0.840 39 H 0.150 0.850 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.539 15.628 -3.832 21.686 hybrid contribution -0.811 -0.602 -0.263 1.044 sum -15.350 15.026 -4.094 21.867 Atomic orbital electron populations 1.22721 0.81811 1.02683 0.99333 1.88083 1.18934 1.27064 1.95180 1.23143 0.95118 0.85467 0.99730 1.21636 0.91133 0.99528 0.89551 1.47812 1.64341 1.09050 1.09808 1.19713 0.97893 0.74370 0.97879 1.21370 0.96107 0.93648 1.45644 0.90778 1.24832 0.95145 0.98307 0.94655 1.69907 1.18139 1.17191 1.48424 0.86878 0.82446 0.81430 0.79186 1.20128 1.21136 1.18657 1.20323 0.79022 0.87984 0.84764 1.90720 1.45670 1.74209 1.29488 1.21985 1.03534 0.93753 0.86540 1.45099 1.09516 1.49422 1.14704 1.21871 0.94150 0.93288 0.88829 1.20546 0.97931 1.10397 0.97427 1.21373 0.92430 0.92066 0.98201 1.22084 1.01635 1.08230 0.94250 1.17157 0.80764 0.80382 0.89812 1.90993 1.47064 1.57126 1.47256 0.94507 0.89786 0.94383 0.92455 0.93860 0.88177 0.89640 0.93690 0.95043 0.92656 0.85597 0.87055 0.82583 0.83978 0.85031 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.37 -5.59 9.53 -35.23 -0.34 -5.93 16 3 C 0.04 0.52 6.28 37.16 0.23 0.75 16 4 C 0.11 1.59 5.62 -4.04 -0.02 1.56 16 5 N -0.58 -11.86 2.42 -175.06 -0.42 -12.28 16 6 C 0.22 5.58 4.05 -5.20 -0.02 5.56 16 7 C -0.53 -15.84 9.94 -34.44 -0.34 -16.18 16 8 H 0.07 2.45 8.06 -52.48 -0.42 2.03 16 9 C 0.07 2.21 5.47 -17.82 -0.10 2.11 16 10 N -0.90 -28.79 13.96 55.43 0.77 -28.01 16 11 Si 0.87 22.37 27.47 -169.99 -4.67 17.70 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 15 C 0.49 10.09 7.74 -10.99 -0.09 10.01 16 16 O -0.52 -13.28 16.01 5.56 0.09 -13.19 16 17 C 0.07 0.98 4.37 -5.19 -0.02 0.95 16 18 N -0.48 -7.17 2.07 -121.07 -0.25 -7.42 16 19 C 0.15 1.63 10.28 -16.84 -0.17 1.45 16 20 C -0.24 -2.33 10.01 -39.88 -0.40 -2.73 16 21 C -0.02 -0.20 10.10 -39.51 -0.40 -0.60 16 22 C -0.24 -3.41 9.99 -39.38 -0.39 -3.80 16 23 C 0.52 9.24 7.40 -15.44 -0.11 9.13 16 24 O -0.54 -12.08 16.64 4.87 0.08 -12.00 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.44 7.30 -51.92 -0.38 0.06 16 30 H 0.10 1.64 8.07 -51.93 -0.42 1.22 16 31 H 0.09 1.00 6.44 -51.92 -0.33 0.66 16 32 H 0.05 1.11 6.17 -51.93 -0.32 0.79 16 33 H 0.03 0.85 6.85 -51.93 -0.36 0.50 16 34 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 35 H 0.13 1.83 6.65 -51.93 -0.35 1.48 16 36 H 0.11 1.03 7.13 -51.93 -0.37 0.66 16 37 H 0.16 1.18 8.04 -52.49 -0.42 0.76 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -41.39 340.85 -5.82 -47.21 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.50 Total: -0.86 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -0.72 Total: 9.65 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.10 Total: -47.71 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.17 Total: -31.12 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -41.39 -5.82 -47.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.061 kcal (2) G-P(sol) polarization free energy of solvation -41.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds