Wall clock time and date at job start Fri Apr 10 2020 17:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99497 * 2 1 4 4 C 1.52998 * 109.46825 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47361 * 64.99861 * 4 3 2 6 6 C 1.46503 * 119.99726 * 269.99556 * 5 4 3 7 7 C 1.50690 * 109.47303 * 270.00284 * 6 5 4 8 8 H 1.08006 * 120.00337 * 359.97438 * 7 6 5 9 9 C 1.37885 * 120.00195 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00317 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99410 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47335 * 90.00344 * 11 9 7 13 13 H 1.48505 * 109.46903 * 210.00171 * 11 9 7 14 14 H 1.48504 * 109.47400 * 329.99810 * 11 9 7 15 15 C 1.34778 * 120.00035 * 90.00374 * 5 4 3 16 16 O 1.21273 * 119.99772 * 180.02562 * 15 5 4 17 17 C 1.50695 * 119.99864 * 359.97438 * 15 5 4 18 18 N 1.46507 * 109.47098 * 180.02562 * 17 15 5 19 19 C 1.35763 * 119.62574 * 89.99849 * 18 17 15 20 20 C 1.35346 * 120.69997 * 180.27933 * 19 18 17 21 21 C 1.40202 * 119.94860 * 359.43664 * 20 19 18 22 22 C 1.36395 * 119.26120 * 0.57668 * 21 20 19 23 23 C 1.34664 * 119.61981 * 270.02248 * 18 17 15 24 24 O 1.22055 * 119.98569 * 359.97438 * 23 18 17 25 25 H 1.09001 * 109.47112 * 60.00678 * 1 2 3 26 26 H 1.08998 * 109.46856 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46818 * 300.00007 * 1 2 3 28 28 H 1.08995 * 109.47182 * 59.99908 * 3 2 1 29 29 H 1.09008 * 109.47009 * 299.99537 * 3 2 1 30 30 H 1.09000 * 109.46883 * 304.99592 * 4 3 2 31 31 H 1.09009 * 109.47046 * 185.00246 * 4 3 2 32 32 H 1.09001 * 109.46822 * 30.00326 * 6 5 4 33 33 H 1.08998 * 109.46560 * 150.00099 * 6 5 4 34 34 H 0.97005 * 120.00006 * 179.97438 * 10 9 7 35 35 H 1.08991 * 109.47470 * 60.00573 * 17 15 5 36 36 H 1.09001 * 109.47078 * 300.00121 * 17 15 5 37 37 H 1.08002 * 119.64669 * 359.97438 * 19 18 17 38 38 H 1.07996 * 120.02410 * 179.69320 * 20 19 18 39 39 H 1.08002 * 120.36615 * 180.31976 * 21 20 19 40 40 H 1.08002 * 120.34395 * 179.74309 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1054 -0.8920 -1.3426 7 6 5.5010 -1.2976 -0.9447 8 1 6.2199 -0.5456 -0.6543 9 6 5.8608 -2.6286 -0.9524 10 7 7.0790 -2.9825 -0.6056 11 14 4.6178 -3.9291 -1.4553 12 1 4.7024 -4.1542 -2.9207 13 1 4.9125 -5.1977 -0.7418 14 1 3.2503 -3.4693 -1.1032 15 6 4.2616 1.3338 -2.3218 16 8 4.6256 0.8203 -3.3584 17 6 4.1278 2.8320 -2.2293 18 7 4.4929 3.4351 -3.5136 19 6 3.5378 3.6330 -4.4579 20 6 3.8519 4.1832 -5.6539 21 6 5.1737 4.5658 -5.9227 22 6 6.1319 4.3657 -4.9730 23 6 5.7724 3.7863 -3.7442 24 8 6.6198 3.6020 -2.8853 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8464 -0.8901 30 1 3.8514 0.5684 0.8410 31 1 3.9785 2.1767 0.0890 32 1 3.3854 -1.3628 -0.6732 33 1 3.9122 -1.2113 -2.3667 34 1 7.3320 -3.9190 -0.6106 35 1 4.7897 3.2085 -1.4496 36 1 3.0969 3.0904 -1.9870 37 1 2.5173 3.3439 -4.2543 38 1 3.0843 4.3312 -6.3990 39 1 5.4309 5.0102 -6.8729 40 1 7.1564 4.6501 -5.1631 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103215068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:03 Heat of formation + Delta-G solvation = -94.583208 kcal Electronic energy + Delta-G solvation = -24248.346702 eV Core-core repulsion = 20642.518822 eV Total energy + Delta-G solvation = -3605.827880 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.48275 -40.62958 -38.75289 -37.96522 -36.67756 -35.52863 -34.77077 -31.66665 -30.85942 -30.20580 -28.65307 -27.06278 -25.05408 -24.50366 -24.01899 -23.37361 -20.38221 -19.17508 -18.70931 -18.47200 -18.27331 -17.51383 -17.15963 -16.90450 -16.79011 -16.39237 -16.02687 -15.86908 -15.45426 -15.36319 -15.05029 -14.73691 -14.42448 -13.85044 -13.74851 -13.34781 -13.25074 -13.11391 -12.99892 -12.88051 -12.71950 -12.66552 -12.48831 -12.04073 -11.93876 -11.77739 -11.46239 -11.07997 -10.85847 -10.66699 -10.50707 -9.50034 -8.95422 -8.36660 -6.42020 -0.06466 0.96117 1.28739 1.32918 1.43565 1.49962 1.58811 2.22824 2.28811 2.74715 2.94964 2.99492 3.42874 3.65647 3.77486 3.94280 4.08040 4.14144 4.22876 4.28498 4.36190 4.42514 4.51813 4.55680 4.59343 4.66548 4.88136 4.90046 4.93955 4.96238 5.06228 5.19629 5.39505 5.43535 5.54289 5.68984 6.08600 6.19280 6.34525 6.59114 6.60318 6.99037 7.14713 7.27725 8.81126 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.005486 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.350371 B = 5102.482022 C = 6334.156708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.419 6.419 3 C 0.048 3.952 4 C 0.095 3.905 5 N -0.586 5.586 6 C 0.239 3.761 7 C -0.540 4.540 8 H 0.020 0.980 9 C 0.008 3.992 10 N -0.948 5.948 11 Si 0.951 3.049 12 H -0.276 1.276 13 H -0.272 1.272 14 H -0.236 1.236 15 C 0.485 3.515 16 O -0.586 6.586 17 C 0.079 3.921 18 N -0.481 5.481 19 C 0.132 3.868 20 C -0.229 4.229 21 C 0.010 3.990 22 C -0.287 4.287 23 C 0.493 3.507 24 O -0.617 6.617 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.012 0.988 34 H 0.268 0.732 35 H 0.121 0.879 36 H 0.177 0.823 37 H 0.201 0.799 38 H 0.189 0.811 39 H 0.173 0.827 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.278 17.853 -5.236 27.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.339 6.339 3 C -0.029 4.029 4 C -0.027 4.027 5 N -0.316 5.316 6 C 0.116 3.884 7 C -0.579 4.579 8 H 0.038 0.962 9 C -0.189 4.189 10 N -0.588 5.588 11 Si 0.773 3.227 12 H -0.202 1.202 13 H -0.197 1.197 14 H -0.159 1.159 15 C 0.272 3.728 16 O -0.467 6.467 17 C -0.046 4.046 18 N -0.190 5.190 19 C 0.006 3.994 20 C -0.251 4.251 21 C -0.011 4.011 22 C -0.308 4.308 23 C 0.298 3.702 24 O -0.505 6.505 25 H 0.070 0.930 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.136 0.864 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.139 0.861 36 H 0.194 0.806 37 H 0.218 0.782 38 H 0.206 0.794 39 H 0.190 0.810 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.365 17.140 -5.139 26.367 hybrid contribution 0.655 -0.962 0.089 1.167 sum -18.710 16.179 -5.050 25.245 Atomic orbital electron populations 1.22878 0.79709 1.03175 1.01101 1.88006 1.21365 1.28939 1.95611 1.23165 0.91847 0.85080 1.02765 1.22025 0.94395 1.00153 0.86122 1.47868 1.64296 1.07441 1.12004 1.19214 0.94751 0.77990 0.96425 1.21639 0.97703 0.92920 1.45618 0.96205 1.25913 0.97525 1.01125 0.94380 1.70076 1.20716 1.18129 1.49910 0.85664 0.80454 0.78027 0.78512 1.20182 1.19684 1.15887 1.21358 0.77308 0.90462 0.83629 1.90673 1.48250 1.75930 1.31825 1.22056 1.07055 0.88781 0.86726 1.45148 1.09445 1.48687 1.15695 1.22783 0.95168 0.92903 0.88521 1.21218 0.98367 1.07891 0.97644 1.21904 0.92036 0.88880 0.98308 1.22083 1.02884 1.11414 0.94451 1.17790 0.81323 0.80697 0.90392 1.90931 1.49186 1.60941 1.49480 0.93020 0.90126 0.92210 0.88624 0.91257 0.90553 0.86395 0.92528 0.96982 0.92266 0.86070 0.80563 0.78235 0.79363 0.80968 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.42 -11.38 9.53 -148.98 -1.42 -12.80 16 3 C 0.05 0.97 6.28 71.98 0.45 1.42 16 4 C 0.10 2.74 5.62 86.38 0.49 3.23 16 5 N -0.59 -24.18 2.42 -826.17 -2.00 -26.18 16 6 C 0.24 12.29 4.05 85.63 0.35 12.63 16 7 C -0.54 -34.13 9.94 25.60 0.25 -33.88 16 8 H 0.02 1.41 8.06 -2.91 -0.02 1.39 16 9 C 0.01 0.51 5.47 84.66 0.46 0.97 16 10 N -0.95 -63.56 13.96 21.45 0.30 -63.26 16 11 Si 0.95 47.10 27.47 68.60 1.88 48.98 16 12 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 13 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.24 -10.59 6.54 99.48 0.65 -9.94 16 15 C 0.49 19.92 7.74 87.66 0.68 20.60 16 16 O -0.59 -30.64 16.01 -3.01 -0.05 -30.69 16 17 C 0.08 2.16 4.37 85.63 0.37 2.53 16 18 N -0.48 -13.88 2.07 -655.07 -1.36 -15.24 16 19 C 0.13 2.42 10.28 83.42 0.86 3.27 16 20 C -0.23 -3.37 10.01 22.08 0.22 -3.15 16 21 C 0.01 0.19 10.10 22.32 0.23 0.41 16 22 C -0.29 -8.26 9.99 22.40 0.22 -8.04 16 23 C 0.49 18.32 7.40 84.82 0.63 18.95 16 24 O -0.62 -29.82 16.64 -5.49 -0.09 -29.91 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.03 7.30 -2.38 -0.02 1.01 16 30 H 0.08 2.55 8.07 -2.39 -0.02 2.53 16 31 H 0.12 2.55 6.44 -2.38 -0.02 2.54 16 32 H 0.06 2.78 6.17 -2.39 -0.01 2.76 16 33 H 0.01 0.67 6.85 -2.39 -0.02 0.65 16 34 H 0.27 16.63 8.31 -92.70 -0.77 15.86 16 35 H 0.12 3.51 6.65 -2.39 -0.02 3.49 16 36 H 0.18 2.38 7.13 -2.39 -0.02 2.36 16 37 H 0.20 1.79 8.04 -2.91 -0.02 1.77 16 38 H 0.19 1.10 8.06 -2.91 -0.02 1.07 16 39 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -102.92 340.85 4.71 -98.21 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.98 Total: 10.19 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 6.46 Total: 20.69 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -3.06 Total: -104.68 kcal Atomic # 8 Polarization: -71.84 SS G_CDS: -1.56 Total: -73.40 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.88 Total: 48.98 kcal Total: -102.92 4.71 -98.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103215068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.628 kcal (2) G-P(sol) polarization free energy of solvation -102.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds