Wall clock time and date at job start Fri Apr 10 2020 17:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42902 * 113.99921 * 2 1 4 4 C 1.52996 * 109.46906 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.47248 * 55.00434 * 4 3 2 6 6 O 1.42903 * 109.47164 * 294.99934 * 4 3 2 7 7 C 1.53000 * 109.46888 * 175.00390 * 4 3 2 8 8 N 1.46499 * 109.47072 * 185.00188 * 7 4 3 9 9 C 1.34786 * 119.99787 * 180.02562 * 8 7 4 10 10 O 1.21579 * 119.99815 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99681 * 179.97438 * 9 8 7 12 12 C 1.39246 * 119.99782 * 175.70803 * 11 9 8 13 13 C 1.39482 * 119.82995 * 215.02181 * 12 11 9 14 14 C 1.36375 * 120.16252 * 179.75985 * 13 12 11 15 15 C 1.40871 * 119.82878 * 0.53746 * 14 13 12 16 16 C 1.41160 * 120.16233 * 179.69106 * 15 14 13 17 17 H 1.07995 * 120.00387 * 214.80400 * 16 15 14 18 18 C 1.39901 * 119.99798 * 34.81147 * 16 15 14 19 19 N 1.30877 * 119.99849 * 355.55286 * 18 16 15 20 20 Si 1.86794 * 119.99983 * 175.55483 * 18 16 15 21 21 H 1.48498 * 109.47541 * 89.99800 * 20 18 16 22 22 H 1.48500 * 109.47090 * 210.00040 * 20 18 16 23 23 H 1.48508 * 109.47207 * 329.99714 * 20 18 16 24 24 C 1.40868 * 119.67425 * 359.71753 * 15 14 13 25 25 C 1.36373 * 119.82399 * 0.02562 * 24 15 14 26 26 H 1.08998 * 109.47107 * 60.00067 * 1 2 3 27 27 H 1.08995 * 109.47021 * 299.99423 * 1 2 3 28 28 H 1.08998 * 109.46568 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47228 * 300.00387 * 3 2 1 30 30 H 1.09002 * 109.46796 * 60.00134 * 3 2 1 31 31 H 0.96700 * 114.00217 * 299.99935 * 6 4 3 32 32 H 1.09002 * 109.46946 * 305.00144 * 7 4 3 33 33 H 1.08998 * 109.47185 * 64.99791 * 7 4 3 34 34 H 0.96996 * 120.00402 * 359.97438 * 8 7 4 35 35 H 0.97003 * 120.00376 * 355.71537 * 11 9 8 36 36 H 1.07998 * 119.91880 * 0.02562 * 13 12 11 37 37 H 1.08002 * 120.08257 * 180.25490 * 14 13 12 38 38 H 0.97001 * 119.99784 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.08552 * 179.97438 * 24 15 14 40 40 H 1.08009 * 119.91144 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8508 0.5686 -0.8427 6 8 3.9659 0.5792 1.2201 7 6 4.1573 2.5769 -0.1263 8 7 5.6120 2.4530 -0.2470 9 6 6.3746 3.5576 -0.3697 10 8 5.8551 4.6567 -0.3806 11 7 7.7130 3.4435 -0.4802 12 6 8.4927 4.5767 -0.6966 13 6 9.6330 4.4921 -1.4953 14 6 10.3989 5.5988 -1.7157 15 6 10.0420 6.8269 -1.1250 16 6 10.8334 7.9753 -1.3431 17 1 10.9547 8.7049 -0.5562 18 6 11.4604 8.1683 -2.5788 19 7 11.3854 7.2439 -3.5021 20 14 12.4047 9.7455 -2.9106 21 1 13.8209 9.5704 -2.4995 22 1 12.3456 10.0621 -4.3602 23 1 11.7983 10.8579 -2.1358 24 6 8.8919 6.9031 -0.3153 25 6 8.1330 5.7891 -0.1083 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5137 0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6886 1.8464 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 3.7192 1.0745 2.0132 32 1 3.7602 3.0736 -1.0116 33 1 3.9149 3.1644 0.7593 34 1 6.0265 1.5761 -0.2379 35 1 8.1330 2.5721 -0.4092 36 1 9.9078 3.5489 -1.9439 37 1 11.2793 5.5327 -2.3377 38 1 11.8204 7.3776 -4.3587 39 1 8.6124 7.8412 0.1412 40 1 7.2506 5.8461 0.5120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118009860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:16 Heat of formation + Delta-G solvation = -127.508407 kcal Electronic energy + Delta-G solvation = -22507.648296 eV Core-core repulsion = 18900.392672 eV Total energy + Delta-G solvation = -3607.255624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.44109 -39.73870 -39.09336 -37.71499 -36.17078 -35.34623 -34.59881 -31.75811 -31.41042 -30.52021 -28.08195 -26.80999 -25.65727 -23.42255 -22.91763 -22.61001 -21.60507 -19.47975 -19.10556 -18.59071 -17.70590 -17.59565 -17.01939 -16.98656 -16.53806 -16.11110 -15.78719 -15.61492 -15.52264 -15.12891 -14.79140 -14.49174 -14.13244 -13.99220 -13.66429 -13.51127 -13.21163 -13.01181 -12.82630 -12.75309 -12.52805 -12.46329 -11.87047 -11.81304 -11.38940 -11.26045 -11.16997 -10.98496 -10.67777 -10.64862 -10.11927 -9.44078 -8.67114 -8.47783 -6.30089 0.86337 1.16772 1.40550 1.47793 1.55050 1.68567 2.19803 2.26221 2.70164 2.83634 3.36037 3.46679 3.70868 3.86933 3.91384 4.02814 4.35798 4.41608 4.43046 4.54811 4.55088 4.57038 4.65914 4.86900 4.95209 4.99206 5.15352 5.16935 5.34927 5.42409 5.46822 5.71374 5.83362 6.05250 6.13252 6.16418 6.26658 6.42212 6.70861 6.75145 6.99334 7.03526 7.14276 7.64651 8.44884 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.047779 B = 0.002333 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.890603 B =12001.025818 C =12095.765421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.031 3.969 4 C 0.113 3.887 5 H 0.112 0.888 6 O -0.563 6.563 7 C 0.113 3.887 8 N -0.725 5.725 9 C 0.693 3.307 10 O -0.624 6.624 11 N -0.659 5.659 12 C 0.041 3.959 13 C -0.121 4.121 14 C -0.158 4.158 15 C 0.064 3.936 16 C -0.498 4.498 17 H 0.072 0.928 18 C 0.026 3.974 19 N -0.843 5.843 20 Si 0.988 3.012 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.263 1.263 24 C -0.219 4.219 25 C -0.098 4.098 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.389 0.611 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.412 0.588 35 H 0.414 0.586 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.284 0.716 39 H 0.096 0.904 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.590 -13.969 5.030 21.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C -0.046 4.046 4 C 0.053 3.947 5 H 0.130 0.870 6 O -0.370 6.370 7 C -0.012 4.012 8 N -0.382 5.382 9 C 0.394 3.606 10 O -0.504 6.504 11 N -0.307 5.307 12 C -0.053 4.053 13 C -0.141 4.141 14 C -0.178 4.178 15 C 0.062 3.938 16 C -0.529 4.529 17 H 0.090 0.910 18 C -0.185 4.185 19 N -0.471 5.471 20 Si 0.810 3.190 21 H -0.184 1.184 22 H -0.195 1.195 23 H -0.187 1.187 24 C -0.239 4.239 25 C -0.118 4.118 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.238 0.762 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.249 0.751 35 H 0.251 0.749 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.694 -13.690 4.379 21.281 hybrid contribution 0.254 0.747 0.053 0.791 sum -15.440 -12.943 4.432 20.629 Atomic orbital electron populations 1.22944 0.79445 1.03821 1.00946 1.87888 1.21369 1.27870 1.95631 1.23179 0.93354 0.85339 1.02727 1.21955 0.91597 0.92111 0.89028 0.87038 1.86603 1.81155 1.53267 1.16016 1.21793 0.78864 0.97507 1.03044 1.44727 1.06894 1.07457 1.79116 1.16157 0.81624 0.84703 0.78118 1.90885 1.73323 1.26919 1.59303 1.41888 1.04181 1.09598 1.75033 1.17096 0.96056 0.87343 1.04785 1.20536 0.96123 0.98916 0.98558 1.21165 1.01408 0.91565 1.03640 1.18042 0.91112 0.93506 0.91177 1.19701 1.27564 1.06087 0.99531 0.90985 1.26737 0.95246 1.01418 0.95135 1.69831 1.36893 1.34589 1.05771 0.85104 0.78606 0.77259 0.78079 1.18424 1.19463 1.18718 1.20927 0.97431 0.97566 1.07944 1.20525 0.98823 0.92792 0.99677 0.93140 0.93037 0.88699 0.90964 0.91099 0.76159 0.90972 0.91048 0.75085 0.74887 0.85779 0.86299 0.90548 0.88621 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -6.75 10.67 -144.34 -1.54 -8.29 16 3 C 0.03 0.40 5.57 71.98 0.40 0.80 16 4 C 0.11 1.63 3.28 30.59 0.10 1.73 16 5 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 6 O -0.56 -8.87 13.25 -144.34 -1.91 -10.79 16 7 C 0.11 2.09 5.31 86.38 0.46 2.55 16 8 N -0.72 -16.49 5.51 -478.53 -2.64 -19.12 16 9 C 0.69 23.59 8.40 179.05 1.50 25.09 16 10 O -0.62 -27.16 13.76 -3.96 -0.05 -27.21 16 11 N -0.66 -22.30 5.31 -316.78 -1.68 -23.98 16 12 C 0.04 1.83 6.31 38.56 0.24 2.08 16 13 C -0.12 -5.49 9.90 22.13 0.22 -5.27 16 14 C -0.16 -8.35 8.62 22.48 0.19 -8.15 16 15 C 0.06 3.59 5.55 -21.27 -0.12 3.47 16 16 C -0.50 -27.78 9.03 23.39 0.21 -27.57 16 17 H 0.07 3.88 7.85 -2.91 -0.02 3.86 16 18 C 0.03 1.36 5.42 85.24 0.46 1.82 16 19 N -0.84 -45.09 10.60 21.82 0.23 -44.86 16 20 Si 0.99 39.71 29.56 68.60 2.03 41.73 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 24 C -0.22 -11.61 9.74 22.48 0.22 -11.39 16 25 C -0.10 -4.82 8.61 22.13 0.19 -4.63 16 26 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.39 3.80 9.05 -74.06 -0.67 3.13 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.41 7.20 8.49 -92.71 -0.79 6.41 16 35 H 0.41 10.44 8.83 -92.71 -0.82 9.62 16 36 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 37 H 0.12 6.54 6.13 -2.91 -0.02 6.52 16 38 H 0.28 13.79 8.30 -92.71 -0.77 13.03 16 39 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 40 H 0.11 5.30 6.22 -2.91 -0.02 5.28 16 Total: -1.00 -72.83 342.82 -1.42 -74.25 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: -1.19 Total: 36.24 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 5.33 Total: -17.97 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -4.09 Total: -87.96 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -3.51 Total: -46.29 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.73 kcal Total: -72.83 -1.42 -74.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118009860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.258 kcal (2) G-P(sol) polarization free energy of solvation -72.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds