Wall clock time and date at job start Fri Apr 10 2020 17:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99997 * 2 1 4 4 O 1.20826 * 119.99905 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00004 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.47216 * 59.99519 * 5 3 2 7 7 C 1.52996 * 109.46917 * 299.99844 * 5 3 2 8 8 C 1.53006 * 109.47023 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.47252 * 59.99766 * 8 7 5 10 10 C 1.52998 * 109.46932 * 300.00032 * 9 8 7 11 11 H 1.09004 * 109.47122 * 300.00117 * 10 9 8 12 12 C 1.50702 * 109.46711 * 180.02562 * 10 9 8 13 13 O 1.21287 * 119.99729 * 242.71179 * 12 10 9 14 14 N 1.34775 * 120.00088 * 62.72403 * 12 10 9 15 15 C 1.37098 * 120.00285 * 2.98688 * 14 12 10 16 16 H 1.08005 * 119.99439 * 9.46892 * 15 14 12 17 17 C 1.38946 * 120.00490 * 189.46568 * 15 14 12 18 18 N 1.31419 * 119.99402 * 28.25751 * 17 15 14 19 19 Si 1.86791 * 120.00492 * 208.25998 * 17 15 14 20 20 H 1.48504 * 109.47218 * 89.99572 * 19 17 15 21 21 H 1.48501 * 109.47389 * 209.99964 * 19 17 15 22 22 H 1.48506 * 109.47147 * 329.99901 * 19 17 15 23 23 C 1.46500 * 119.99847 * 182.99152 * 14 12 10 24 24 C 1.47202 * 109.47293 * 89.15069 * 23 14 12 25 25 N 9.70206 * 132.75759 * 20.56075 * 2 1 3 26 26 C 1.52993 * 109.47107 * 60.00090 * 10 9 8 27 27 H 1.09003 * 109.47370 * 60.00617 * 1 2 3 28 28 H 1.09008 * 109.47318 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47374 * 300.00261 * 1 2 3 30 30 H 1.08998 * 109.47259 * 299.99613 * 7 5 3 31 31 H 1.08995 * 109.47707 * 60.00087 * 7 5 3 32 32 H 1.09000 * 109.46989 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.46952 * 299.99094 * 8 7 5 34 34 H 1.08992 * 109.46978 * 60.00247 * 9 8 7 35 35 H 1.08997 * 109.46762 * 180.02562 * 9 8 7 36 36 H 0.97001 * 119.99206 * 179.97438 * 18 17 15 37 37 H 1.09002 * 109.47191 * 209.14993 * 23 14 12 38 38 H 1.09002 * 109.47337 * 329.14972 * 23 14 12 39 39 H 1.09002 * 109.47137 * 179.97438 * 26 10 9 40 40 H 1.09004 * 109.47107 * 60.00018 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7808 -0.8908 7 6 4.1138 0.5811 1.2483 8 6 5.6417 0.6617 1.2481 9 6 6.0750 2.1290 1.2484 10 6 5.5275 2.8227 -0.0005 11 1 5.9172 2.3290 -0.8907 12 6 5.9548 4.2679 -0.0004 13 8 5.1207 5.1469 0.0497 14 7 7.2639 4.5835 -0.0563 15 6 8.2036 3.5923 -0.1751 16 1 7.8951 2.5772 -0.3770 17 6 9.5528 3.8937 -0.0356 18 7 9.9259 4.9036 0.7180 19 14 10.8362 2.8635 -0.9192 20 1 11.0999 3.4446 -2.2602 21 1 12.0931 2.8532 -0.1283 22 1 10.3360 1.4736 -1.0718 23 6 7.6828 5.9858 0.0098 24 6 7.8839 6.3720 1.4160 25 7 8.0387 6.6698 2.5018 26 6 3.9997 2.7421 -0.0002 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.7244 1.0750 2.1385 31 1 3.8048 -0.4642 1.2483 32 1 6.0317 0.1670 2.1376 33 1 6.0314 0.1679 0.3579 34 1 5.6853 2.6227 2.1386 35 1 7.1635 2.1864 1.2478 36 1 10.8679 5.1137 0.8157 37 1 8.6160 6.1125 -0.5388 38 1 6.9122 6.6165 -0.4335 39 1 3.6096 3.2368 -0.8898 40 1 3.6099 3.2359 0.8900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172729406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:36 Heat of formation + Delta-G solvation = -116.408316 kcal Electronic energy + Delta-G solvation = -24313.122823 eV Core-core repulsion = 20706.348535 eV Total energy + Delta-G solvation = -3606.774288 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.82325 -40.90233 -38.65518 -37.46557 -37.29714 -36.29669 -33.51621 -32.66119 -31.77609 -29.35022 -28.48152 -26.73545 -24.84344 -24.03695 -22.01027 -21.08091 -20.62552 -19.66671 -18.55908 -18.14453 -17.89969 -17.42605 -17.19224 -16.27270 -16.02087 -15.87420 -15.61434 -15.02023 -14.84283 -14.65949 -14.37781 -14.18238 -13.95768 -13.63582 -13.51276 -13.39974 -13.14049 -13.06792 -12.87956 -12.82758 -12.37497 -12.27536 -12.14678 -12.04985 -11.86328 -11.78501 -11.67412 -11.49190 -11.32388 -11.09455 -10.93073 -10.24141 -9.94970 -8.34217 -5.80843 1.17404 1.48381 1.61352 1.69661 1.72785 1.83632 2.10081 2.27040 2.42367 3.04147 3.12038 3.59763 3.66011 3.79802 3.86565 4.11692 4.27419 4.31615 4.34743 4.35911 4.44805 4.50572 4.54022 4.57228 4.72752 4.74593 4.82584 4.88653 5.12307 5.14452 5.23366 5.28498 5.35932 5.40174 5.51977 5.56904 5.61679 5.71782 6.40191 6.74489 6.99815 7.14852 7.52361 7.93789 8.71164 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020312 B = 0.004522 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.147338 B = 6190.187800 C = 6975.609213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.543 6.543 5 C -0.072 4.072 6 H 0.141 0.859 7 C -0.104 4.104 8 C -0.104 4.104 9 C -0.116 4.116 10 C -0.074 4.074 11 H 0.115 0.885 12 C 0.453 3.547 13 O -0.632 6.632 14 N -0.447 5.447 15 C -0.351 4.351 16 H 0.133 0.867 17 C 0.004 3.996 18 N -0.890 5.890 19 Si 0.982 3.018 20 H -0.274 1.274 21 H -0.301 1.301 22 H -0.250 1.250 23 C 0.227 3.773 24 C 0.265 3.735 25 N -0.517 5.517 26 C -0.072 4.072 27 H 0.059 0.941 28 H 0.136 0.864 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.030 0.970 35 H 0.083 0.917 36 H 0.271 0.729 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.056 0.944 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.524 -14.952 -5.633 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.312 3.688 4 O -0.433 6.433 5 C -0.090 4.090 6 H 0.159 0.841 7 C -0.141 4.141 8 C -0.141 4.141 9 C -0.154 4.154 10 C -0.095 4.095 11 H 0.133 0.867 12 C 0.244 3.756 13 O -0.520 6.520 14 N -0.165 5.165 15 C -0.477 4.477 16 H 0.150 0.850 17 C -0.199 4.199 18 N -0.528 5.528 19 Si 0.807 3.193 20 H -0.200 1.200 21 H -0.228 1.228 22 H -0.174 1.174 23 C 0.100 3.900 24 C -0.052 4.052 25 N -0.198 5.198 26 C -0.110 4.110 27 H 0.078 0.922 28 H 0.154 0.846 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.049 0.951 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.144 0.856 38 H 0.121 0.879 39 H 0.075 0.925 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.745 -13.714 -3.949 16.738 hybrid contribution 0.555 0.471 -0.326 0.798 sum -8.190 -13.243 -4.274 16.147 Atomic orbital electron populations 1.23547 0.75172 1.05744 1.02238 1.86499 1.24653 1.32358 1.83648 1.24191 0.92643 0.81110 0.70893 1.90679 1.68068 1.37815 1.46735 1.21159 0.85642 0.97965 1.04259 0.84104 1.21551 0.96554 1.01520 0.94508 1.21500 0.94026 0.94367 1.04245 1.21634 1.02551 0.96443 0.94803 1.20946 0.95000 0.91757 1.01807 0.86733 1.20988 0.81870 0.92229 0.80491 1.90550 1.52445 1.51580 1.57385 1.43925 1.05288 1.04789 1.62531 1.20145 0.85863 0.92189 1.49545 0.85012 1.25948 0.99901 0.98515 0.95508 1.70092 1.18113 1.31970 1.32602 0.85076 0.76684 0.79594 0.77964 1.19982 1.22757 1.17387 1.18714 1.02564 0.84658 0.84042 1.29767 0.89005 0.90701 0.95707 1.80845 1.13465 1.11736 1.13732 1.21041 0.94033 0.93882 1.02063 0.92199 0.84603 0.92511 0.92973 0.87944 0.90011 0.89023 0.95084 0.89814 0.91856 0.85604 0.87926 0.92477 0.94028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.36 -7.52 10.47 -51.39 -0.54 -8.06 16 3 C 0.47 12.50 7.25 71.23 0.52 13.02 16 4 O -0.54 -18.90 15.73 21.96 0.35 -18.55 16 5 C -0.07 -1.70 2.63 -11.54 -0.03 -1.73 16 6 H 0.14 2.51 8.14 -2.38 -0.02 2.49 16 7 C -0.10 -2.14 5.14 30.59 0.16 -1.98 16 8 C -0.10 -2.22 5.92 30.60 0.18 -2.04 16 9 C -0.12 -3.68 4.82 30.59 0.15 -3.53 16 10 C -0.07 -2.51 1.70 -11.54 -0.02 -2.53 16 11 H 0.11 3.32 7.51 -2.38 -0.02 3.30 16 12 C 0.45 19.92 7.00 87.66 0.61 20.54 16 13 O -0.63 -31.93 15.56 -3.05 -0.05 -31.98 16 14 N -0.45 -19.79 2.59 -645.41 -1.67 -21.46 16 15 C -0.35 -14.82 7.63 84.04 0.64 -14.18 16 16 H 0.13 4.95 5.45 -2.91 -0.02 4.93 16 17 C 0.00 0.19 4.78 84.92 0.41 0.60 16 18 N -0.89 -42.51 9.44 21.66 0.20 -42.30 16 19 Si 0.98 34.49 29.64 68.60 2.03 36.53 16 20 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 21 H -0.30 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.25 -8.04 7.11 99.48 0.71 -7.33 16 23 C 0.23 9.97 5.18 84.57 0.44 10.41 16 24 C 0.27 13.10 13.58 89.44 1.21 14.32 16 25 N -0.52 -27.18 18.54 20.01 0.37 -26.81 16 26 C -0.07 -2.38 3.07 30.59 0.09 -2.28 16 27 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 28 H 0.14 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 1.57 8.11 -2.39 -0.02 1.55 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 2.96 5.43 -2.39 -0.01 2.95 16 36 H 0.27 12.69 8.31 -92.71 -0.77 11.92 16 37 H 0.13 5.36 6.42 -2.39 -0.02 5.34 16 38 H 0.10 4.21 7.41 -2.39 -0.02 4.19 16 39 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 40 H 0.04 1.63 8.03 -2.38 -0.02 1.61 16 Total: -1.00 -65.78 332.40 7.31 -58.46 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 1.06 Total: 21.98 kcal Atomic # 6 Polarization: 26.65 SS G_CDS: 5.56 Total: 32.20 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -1.09 Total: -90.57 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: -0.24 Total: -58.60 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.53 kcal Total: -65.78 7.31 -58.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172729406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.947 kcal (2) G-P(sol) polarization free energy of solvation -65.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds