Wall clock time and date at job start Fri Apr 10 2020 17:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35995 * 116.99587 * 2 1 4 4 C 1.38565 * 120.07439 * 359.72507 * 3 2 1 5 5 C 1.38248 * 119.99552 * 179.74455 * 4 3 2 6 6 C 1.50700 * 119.92374 * 180.25225 * 5 4 3 7 7 N 1.46898 * 109.47526 * 270.25810 * 6 5 4 8 8 C 1.46893 * 111.00086 * 66.04194 * 7 6 5 9 9 C 1.46896 * 111.00046 * 190.00299 * 7 6 5 10 10 C 1.50704 * 109.47172 * 169.99729 * 9 7 6 11 11 O 1.21294 * 119.99791 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00008 * 179.97438 * 10 9 7 13 13 C 1.37105 * 119.99963 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99791 * 359.97438 * 13 12 10 15 15 C 1.38947 * 120.00171 * 180.02562 * 13 12 10 16 16 N 1.31405 * 120.00074 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99819 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47177 * 90.00527 * 17 15 13 19 19 H 1.48502 * 109.47292 * 210.00181 * 17 15 13 20 20 H 1.48502 * 109.47262 * 330.00475 * 17 15 13 21 21 C 1.38246 * 120.14817 * 0.50974 * 5 4 3 22 22 C 1.38242 * 120.14884 * 359.76851 * 21 5 4 23 23 C 1.38565 * 119.99815 * 359.97438 * 22 21 5 24 24 O 1.35996 * 120.07637 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.47382 * 60.00075 * 1 2 3 26 26 H 1.09001 * 109.46938 * 300.00061 * 1 2 3 27 27 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.07994 * 119.99980 * 359.97438 * 4 3 2 29 29 H 1.09000 * 109.47412 * 30.25759 * 6 5 4 30 30 H 1.09000 * 109.47112 * 150.25577 * 6 5 4 31 31 H 1.09004 * 109.47435 * 60.00809 * 8 7 6 32 32 H 1.09005 * 109.47452 * 179.97438 * 8 7 6 33 33 H 1.08992 * 109.47709 * 300.00239 * 8 7 6 34 34 H 1.09005 * 109.47079 * 289.99443 * 9 7 6 35 35 H 1.09002 * 109.47344 * 49.99669 * 9 7 6 36 36 H 0.97003 * 120.00172 * 0.02562 * 12 10 9 37 37 H 0.97006 * 119.99915 * 179.97438 * 16 15 13 38 38 H 1.08004 * 119.92680 * 179.74146 * 21 5 4 39 39 H 1.07997 * 120.00411 * 179.97438 * 22 21 5 40 40 H 0.96704 * 113.99800 * 270.02241 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 -0.0058 5 6 1.9223 3.6058 -0.0004 6 6 1.1015 4.8696 -0.0009 7 7 0.8352 5.2801 -1.3860 8 6 -0.0252 4.3043 -2.0681 9 6 0.2458 6.6248 -1.4325 10 6 0.2139 7.1103 -2.8589 11 8 0.6406 6.4054 -3.7491 12 7 -0.2888 8.3275 -3.1454 13 6 -0.3183 8.7689 -4.4431 14 1 0.0617 8.1413 -5.2357 15 6 -0.8360 10.0240 -4.7384 16 7 -0.8648 10.4469 -5.9823 17 14 -1.4925 11.1097 -3.3674 18 1 -0.3950 11.9604 -2.8411 19 1 -2.5780 11.9738 -3.8969 20 1 -2.0265 10.2582 -2.2742 21 6 3.3028 3.6799 0.0000 22 6 4.0602 2.5235 0.0000 23 6 3.4359 1.2864 0.0000 24 8 4.1795 0.1478 -0.0006 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2146 2.3196 -0.0107 29 1 0.1570 4.6897 0.5126 30 1 1.6498 5.6592 0.5130 31 1 -0.9747 4.2244 -1.5387 32 1 -0.2070 4.6327 -3.0915 33 1 0.4668 3.3318 -2.0803 34 1 -0.7696 6.5904 -1.0377 35 1 0.8470 7.3061 -0.8303 36 1 -0.6297 8.8913 -2.4334 37 1 -1.2266 11.3230 -6.1885 38 1 3.7906 4.6435 0.0000 39 1 5.1385 2.5841 -0.0001 40 1 4.3944 -0.1812 -0.8842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174542547.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:47 Heat of formation + Delta-G solvation = -98.757773 kcal Electronic energy + Delta-G solvation = -23195.524389 eV Core-core repulsion = 19589.515486 eV Total energy + Delta-G solvation = -3606.008903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.45828 -40.45634 -38.90133 -38.42784 -36.84281 -35.84081 -33.73546 -31.93449 -31.13585 -29.40800 -28.70229 -27.37241 -26.32756 -23.81939 -23.29658 -22.01881 -21.22840 -20.16034 -19.56276 -18.33658 -17.79129 -17.42664 -16.97035 -16.80826 -16.55546 -16.14726 -16.14379 -15.61147 -15.30349 -15.15494 -14.91561 -14.87588 -14.52527 -14.16413 -13.73526 -13.36281 -13.21050 -13.07189 -12.90848 -12.66933 -12.57620 -12.41449 -12.38208 -12.10338 -11.95983 -11.91879 -11.51540 -11.45029 -10.35364 -10.21249 -9.78422 -9.20282 -9.04835 -8.39408 -6.00047 0.17067 0.41103 1.31454 1.37485 1.46000 1.99454 2.24810 2.31290 2.44090 2.86867 3.16873 3.28508 3.35182 3.74253 3.87262 4.10385 4.13957 4.30297 4.34855 4.35263 4.37342 4.44810 4.51929 4.56168 4.61789 4.70756 4.72012 4.74890 4.94668 5.13922 5.17862 5.32583 5.55093 5.61240 5.73143 5.91689 6.03086 6.16479 6.27774 6.62502 6.86692 6.91391 7.42982 8.01185 8.78455 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.030683 B = 0.002924 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.345811 B = 9573.250511 C = 9743.798812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.085 3.915 4 C -0.187 4.187 5 C -0.051 4.051 6 C 0.094 3.906 7 N -0.535 5.535 8 C 0.027 3.973 9 C 0.054 3.946 10 C 0.451 3.549 11 O -0.606 6.606 12 N -0.593 5.593 13 C -0.326 4.326 14 H 0.054 0.946 15 C -0.017 4.017 16 N -0.937 5.937 17 Si 0.965 3.035 18 H -0.257 1.257 19 H -0.277 1.277 20 H -0.229 1.229 21 C -0.124 4.124 22 C -0.111 4.111 23 C 0.056 3.944 24 O -0.501 6.501 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.142 0.858 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.390 0.610 37 H 0.278 0.722 38 H 0.141 0.859 39 H 0.151 0.849 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 -14.984 19.897 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.039 3.961 4 C -0.206 4.206 5 C -0.052 4.052 6 C -0.032 4.032 7 N -0.259 5.259 8 C -0.121 4.121 9 C -0.076 4.076 10 C 0.239 3.761 11 O -0.490 6.490 12 N -0.235 5.235 13 C -0.455 4.455 14 H 0.072 0.928 15 C -0.215 4.215 16 N -0.578 5.578 17 Si 0.785 3.215 18 H -0.181 1.181 19 H -0.203 1.203 20 H -0.153 1.153 21 C -0.143 4.143 22 C -0.130 4.130 23 C 0.010 3.990 24 O -0.312 6.312 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.160 0.840 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.143 0.857 36 H 0.225 0.775 37 H 0.088 0.912 38 H 0.159 0.841 39 H 0.169 0.831 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 2.858 -15.439 19.507 25.041 hybrid contribution -1.270 0.750 -0.415 1.532 sum 1.588 -14.690 19.092 24.142 Atomic orbital electron populations 1.23333 0.76803 1.05521 1.02029 1.86103 1.23052 1.26258 1.88798 1.19587 0.92073 0.85249 0.99180 1.21204 1.00629 0.91139 1.07629 1.19687 0.94233 0.93951 0.97304 1.21184 0.98929 0.94937 0.88156 1.61465 1.47713 1.01055 1.15698 1.22426 0.94390 0.95904 0.99387 1.21862 1.01195 0.92018 0.92570 1.20932 0.81221 0.81810 0.92124 1.90528 1.51218 1.56777 1.50508 1.42033 1.57385 1.16532 1.07544 1.18989 1.40420 1.01604 0.84529 0.92806 1.26121 0.97235 0.98213 0.99917 1.69810 1.46549 1.20888 1.20555 0.85358 0.78982 0.78729 0.78388 1.18128 1.20252 1.15268 1.21082 0.93080 0.98920 1.01191 1.21448 1.01495 0.90451 0.99556 1.17984 0.86473 0.87123 1.07377 1.84811 1.71718 1.39800 1.34913 0.92275 0.91709 0.86254 0.83990 0.92076 0.87649 0.94504 0.93000 0.91336 0.90127 0.85667 0.77477 0.91216 0.84079 0.83100 0.74114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -7.31 10.28 -79.63 -0.82 -8.13 16 3 C 0.08 1.99 6.70 22.57 0.15 2.14 16 4 C -0.19 -3.99 6.94 22.35 0.16 -3.83 16 5 C -0.05 -1.12 4.89 -19.86 -0.10 -1.21 16 6 C 0.09 1.91 5.11 85.56 0.44 2.35 16 7 N -0.53 -15.44 4.49 -931.67 -4.18 -19.63 16 8 C 0.03 0.81 8.76 127.69 1.12 1.93 16 9 C 0.05 1.58 5.45 85.56 0.47 2.05 16 10 C 0.45 19.95 7.47 87.66 0.66 20.60 16 11 O -0.61 -33.21 13.91 -3.07 -0.04 -33.26 16 12 N -0.59 -27.44 5.09 -306.98 -1.56 -29.00 16 13 C -0.33 -18.98 10.16 84.04 0.85 -18.13 16 14 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 15 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 16 N -0.94 -56.50 13.96 21.66 0.30 -56.19 16 17 Si 0.97 38.23 27.74 68.60 1.90 40.13 16 18 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 19 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.23 -7.53 6.52 99.48 0.65 -6.88 16 21 C -0.12 -2.66 9.69 22.27 0.22 -2.44 16 22 C -0.11 -2.33 9.98 22.35 0.22 -2.11 16 23 C 0.06 1.30 6.72 22.57 0.15 1.45 16 24 O -0.50 -10.74 13.29 -79.64 -1.06 -11.80 16 25 H 0.06 0.80 7.65 -2.39 -0.02 0.78 16 26 H 0.06 0.77 7.68 -2.39 -0.02 0.75 16 27 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.14 2.53 6.25 -2.91 -0.02 2.52 16 29 H 0.06 1.02 8.07 -2.39 -0.02 1.00 16 30 H 0.11 1.74 7.87 -2.39 -0.02 1.72 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 2.05 5.83 -2.38 -0.01 2.03 16 33 H 0.07 1.95 6.15 -2.39 -0.01 1.93 16 34 H 0.08 1.90 8.12 -2.38 -0.02 1.88 16 35 H 0.13 2.84 7.93 -2.39 -0.02 2.82 16 36 H 0.39 14.74 5.76 -92.71 -0.53 14.21 16 37 H 0.28 15.33 8.31 -92.70 -0.77 14.56 16 38 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 40 H 0.40 5.21 9.06 -74.05 -0.67 4.54 16 Total: -1.00 -80.89 335.15 0.27 -80.62 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -0.18 Total: 33.55 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 5.91 Total: 3.70 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -5.44 Total: -104.82 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -1.92 Total: -53.19 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.13 kcal Total: -80.89 0.27 -80.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174542547.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.133 kcal (2) G-P(sol) polarization free energy of solvation -80.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds