Wall clock time and date at job start Fri Apr 10 2020 17:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 N 1.41593 * 114.00129 * 2 1 4 4 C 1.34773 * 120.00259 * 180.02562 * 3 2 1 5 5 O 1.21280 * 119.99996 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00304 * 179.97438 * 4 3 2 7 7 N 1.46497 * 109.47387 * 179.97438 * 6 4 3 8 8 C 1.34777 * 120.00152 * 179.97438 * 7 6 4 9 9 O 1.21578 * 119.99929 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99905 * 179.97438 * 8 7 6 11 11 C 1.39246 * 119.99674 * 185.63604 * 10 8 7 12 12 C 1.39684 * 119.57239 * 174.99887 * 11 10 8 13 13 C 1.38644 * 119.49313 * 180.02562 * 12 11 10 14 14 C 1.38354 * 118.67381 * 359.73271 * 13 12 11 15 15 C 1.40583 * 119.12777 * 0.53370 * 14 13 12 16 16 C 1.41331 * 119.78539 * 179.72859 * 15 14 13 17 17 H 1.07997 * 120.00366 * 6.09511 * 16 15 14 18 18 C 1.40023 * 119.99644 * 186.09085 * 16 15 14 19 19 N 1.30747 * 120.00194 * 6.11359 * 18 16 15 20 20 Si 1.86803 * 119.99889 * 186.10995 * 18 16 15 21 21 H 1.48501 * 109.47252 * 265.00384 * 20 18 16 22 22 H 1.48505 * 109.47076 * 25.00473 * 20 18 16 23 23 H 1.48507 * 109.47147 * 145.00244 * 20 18 16 24 24 N 1.31907 * 119.57661 * 355.02284 * 11 10 8 25 25 H 1.08997 * 109.47079 * 299.99968 * 1 2 3 26 26 H 1.08996 * 109.47426 * 60.00143 * 1 2 3 27 27 H 1.09006 * 109.46873 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99838 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.46977 * 59.99387 * 6 4 3 30 30 H 1.09000 * 109.46655 * 299.99781 * 6 4 3 31 31 H 0.97002 * 119.99743 * 359.97438 * 7 6 4 32 32 H 0.96998 * 120.00240 * 5.63424 * 10 8 7 33 33 H 1.07999 * 120.25476 * 0.02562 * 12 11 10 34 34 H 1.08004 * 120.66416 * 180.02562 * 13 12 11 35 35 H 1.08000 * 120.44068 * 180.25793 * 14 13 12 36 36 H 0.97002 * 119.99518 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 3.3452 1.4344 -0.0005 5 8 4.0581 0.4532 -0.0005 6 6 3.9583 2.8112 -0.0011 7 7 5.4187 2.6955 -0.0010 8 6 6.1826 3.8058 -0.0020 9 8 5.6598 4.9034 -0.0034 10 7 7.5262 3.6994 -0.0013 11 6 8.3149 4.8409 0.1161 12 6 9.7019 4.7127 0.2214 13 6 10.4856 5.8503 0.3388 14 6 9.8647 7.0867 0.3423 15 6 8.4641 7.1494 0.2387 16 6 7.8150 8.4048 0.2468 17 1 8.3976 9.3141 0.2330 18 6 6.4165 8.4696 0.2726 19 7 5.7137 7.3757 0.4099 20 14 5.5549 10.1192 0.1112 21 1 5.2511 10.6534 1.4631 22 1 6.4381 11.0705 -0.6101 23 1 4.2904 9.9450 -0.6479 24 7 7.7427 6.0293 0.1270 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.4347 2.0783 -0.0004 29 1 3.6369 3.3523 0.8888 30 1 3.6363 3.3518 -0.8912 31 1 5.8358 1.8198 -0.0002 32 1 7.9437 2.8276 -0.0826 33 1 10.1603 3.7348 0.2114 34 1 11.5597 5.7732 0.4209 35 1 10.4479 7.9916 0.4281 36 1 4.7449 7.4208 0.4281 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674526614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:04 Heat of formation + Delta-G solvation = -14.405604 kcal Electronic energy + Delta-G solvation = -22926.090395 eV Core-core repulsion = 19220.198933 eV Total energy + Delta-G solvation = -3705.891462 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.116 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.33772 -40.58264 -39.39741 -38.24716 -35.99170 -35.16688 -34.80562 -33.60296 -32.17300 -30.97191 -28.73952 -27.44079 -26.98974 -23.88151 -23.07041 -22.07912 -21.42597 -19.92313 -19.49989 -18.93025 -18.00183 -17.61911 -17.13054 -16.66806 -16.29102 -16.24076 -16.03628 -15.60750 -15.52038 -15.35656 -14.92312 -14.59376 -14.25694 -14.18204 -13.67427 -13.49903 -13.06051 -12.85550 -12.67105 -12.52285 -12.27615 -12.25130 -11.75428 -11.44556 -11.28718 -10.91768 -10.82095 -10.11527 -9.95872 -9.83429 -9.09685 -8.76320 -8.03215 -6.34658 0.69266 1.00094 1.31274 1.37484 1.44662 1.55772 1.59159 1.84755 2.32025 2.54312 3.06640 3.28562 3.36574 3.73710 4.10688 4.35483 4.36500 4.36799 4.41413 4.42499 4.72976 4.76510 4.89191 5.00678 5.09192 5.32057 5.46945 5.62751 5.70175 5.86787 5.96187 6.04428 6.15219 6.32575 6.45331 6.86268 7.07726 7.10795 7.19945 7.95103 8.39819 8.62943 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.016452 B = 0.003961 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.554638 B = 7067.979682 C = 8740.221981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 O -0.178 6.178 3 N -0.582 5.582 4 C 0.529 3.471 5 O -0.563 6.563 6 C 0.143 3.857 7 N -0.734 5.734 8 C 0.668 3.332 9 O -0.510 6.510 10 N -0.661 5.661 11 C 0.367 3.633 12 C -0.347 4.347 13 C -0.033 4.033 14 C -0.331 4.331 15 C 0.239 3.761 16 C -0.468 4.468 17 H 0.084 0.916 18 C 0.014 3.986 19 N -0.688 5.688 20 Si 0.975 3.025 21 H -0.265 1.265 22 H -0.260 1.260 23 H -0.272 1.272 24 N -0.507 5.507 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.128 0.872 28 H 0.429 0.571 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.406 0.594 32 H 0.417 0.583 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.104 0.896 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.646 -10.780 -0.761 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 O -0.181 6.181 3 N -0.287 5.287 4 C 0.317 3.683 5 O -0.440 6.440 6 C 0.015 3.985 7 N -0.398 5.398 8 C 0.366 3.634 9 O -0.378 6.378 10 N -0.312 5.312 11 C 0.127 3.873 12 C -0.373 4.373 13 C -0.058 4.058 14 C -0.354 4.354 15 C 0.113 3.887 16 C -0.499 4.499 17 H 0.102 0.898 18 C -0.212 4.212 19 N -0.307 5.307 20 Si 0.796 3.204 21 H -0.190 1.190 22 H -0.184 1.184 23 H -0.197 1.197 24 N -0.226 5.226 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.146 0.854 28 H 0.273 0.727 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.244 0.756 32 H 0.254 0.746 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.122 0.878 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.766 -10.678 -0.794 16.662 hybrid contribution 0.388 -0.021 -0.007 0.389 sum -12.379 -10.699 -0.801 16.381 Atomic orbital electron populations 1.23617 0.77734 1.06174 1.02853 1.90576 1.23175 1.06944 1.97447 1.47282 1.05150 0.99724 1.76541 1.20754 0.80675 0.91466 0.75442 1.90696 1.61269 1.41132 1.50928 1.20643 0.80333 0.91330 1.06224 1.44698 1.05115 1.08133 1.81853 1.16410 0.82061 0.84848 0.80035 1.91358 1.71317 1.24061 1.51088 1.42350 1.04485 1.08487 1.75827 1.18774 0.87566 0.87529 0.93442 1.20906 0.91614 0.99439 1.25297 1.21018 0.99179 0.91613 0.93953 1.21812 0.95593 0.97693 1.20286 1.18863 0.89230 0.92064 0.88499 1.19867 0.92630 0.92275 1.45080 0.89776 1.26970 0.98474 1.01268 0.94473 1.70442 1.06941 1.28529 1.24782 0.85320 0.77941 0.78112 0.79025 1.18987 1.18415 1.19654 1.68566 1.36792 0.95744 1.21504 0.91019 0.90978 0.85429 0.72664 0.87249 0.87084 0.75646 0.74589 0.85220 0.84563 0.87775 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.06 11.30 113.37 1.28 1.22 16 2 O -0.18 -3.55 11.47 -21.37 -0.25 -3.80 16 3 N -0.58 -10.43 6.39 -173.53 -1.11 -11.54 16 4 C 0.53 12.88 8.04 87.66 0.71 13.58 16 5 O -0.56 -18.29 16.07 14.37 0.23 -18.06 16 6 C 0.14 3.50 6.15 85.64 0.53 4.02 16 7 N -0.73 -22.52 5.53 -482.31 -2.67 -25.19 16 8 C 0.67 27.43 8.52 179.05 1.53 28.95 16 9 O -0.51 -25.78 12.23 -3.96 -0.05 -25.83 16 10 N -0.66 -26.42 5.39 -322.12 -1.74 -28.15 16 11 C 0.37 18.04 7.43 133.26 0.99 19.03 16 12 C -0.35 -15.10 9.95 22.72 0.23 -14.88 16 13 C -0.03 -1.48 10.15 22.39 0.23 -1.25 16 14 C -0.33 -16.87 9.83 22.87 0.22 -16.64 16 15 C 0.24 13.86 6.53 40.19 0.26 14.13 16 16 C -0.47 -26.60 9.13 23.46 0.21 -26.38 16 17 H 0.08 4.50 7.85 -2.91 -0.02 4.47 16 18 C 0.01 0.75 5.48 85.29 0.47 1.22 16 19 N -0.69 -38.70 9.19 21.84 0.20 -38.50 16 20 Si 0.97 39.89 29.56 68.60 2.03 41.92 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 24 N -0.51 -29.23 5.77 -186.36 -1.08 -30.30 16 25 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.13 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.43 4.18 8.54 -92.70 -0.79 3.38 16 29 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.41 11.37 7.46 -92.71 -0.69 10.68 16 32 H 0.42 12.74 8.72 -92.71 -0.81 11.94 16 33 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 34 H 0.14 4.82 8.06 -2.91 -0.02 4.79 16 35 H 0.10 4.95 8.06 -2.91 -0.02 4.92 16 36 H 0.27 14.19 8.29 -92.71 -0.77 13.43 16 Total: -1.00 -82.21 321.19 1.10 -81.11 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -1.13 Total: 35.33 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: 6.65 Total: 23.00 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -6.39 Total: -133.68 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -0.06 Total: -47.69 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -82.21 1.10 -81.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674526614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.706 kcal (2) G-P(sol) polarization free energy of solvation -82.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds