Wall clock time and date at job start Fri Apr 10 2020 17:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48496 * 109.46681 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99727 * 3 2 1 6 6 H 1.48501 * 109.47100 * 60.00176 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 N 1.46496 * 114.34784 * 272.36633 * 15 14 13 17 17 C 1.34775 * 120.00454 * 248.92569 * 16 15 14 18 18 O 1.21560 * 119.99638 * 359.97438 * 17 16 15 19 19 C 1.47872 * 120.00414 * 179.97438 * 17 16 15 20 20 N 1.34551 * 126.04565 * 179.97438 * 19 17 16 21 21 C 1.30871 * 107.26451 * 180.02562 * 20 19 17 22 22 N 1.34584 * 107.62848 * 0.02562 * 21 20 19 23 23 H 0.97000 * 125.75425 * 180.02562 * 22 21 20 24 24 N 1.28855 * 108.50264 * 359.73255 * 22 21 20 25 25 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 26 26 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 27 27 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 29 29 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 30 30 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 31 31 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 32 32 H 1.09001 * 114.17484 * 139.66861 * 15 14 13 33 33 H 0.96999 * 120.00355 * 68.91972 * 16 15 14 34 34 H 1.07999 * 126.18669 * 179.97438 * 21 20 19 35 35 H 1.09005 * 113.47182 * 253.47069 * 25 13 12 36 36 H 1.08997 * 113.47572 * 23.87318 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 7 3.6880 -8.3884 -0.3500 17 6 4.3324 -9.3645 -1.0197 18 8 3.8508 -9.8234 -2.0371 19 6 5.6251 -9.8771 -0.5170 20 7 6.3684 -10.8439 -1.0854 21 6 7.4315 -11.0057 -0.3395 22 7 7.3441 -10.1406 0.6878 23 1 7.9946 -10.0389 1.4001 24 7 6.2536 -9.4657 0.5624 25 6 1.5119 -7.2629 0.2349 26 1 -0.4850 0.8401 -0.0004 27 1 0.3532 -2.3906 0.0016 28 1 0.6209 -4.9225 0.8949 29 1 0.6128 -4.9187 -0.8850 30 1 1.6587 -6.2059 -2.0786 31 1 3.4443 -6.1531 -1.7540 32 1 1.8936 -8.5804 -1.5068 33 1 4.0722 -8.0224 0.4620 34 1 8.2335 -11.7071 -0.5159 35 1 1.6894 -7.6711 1.2299 36 1 0.4551 -7.2465 -0.0315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692245374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:11 Heat of formation + Delta-G solvation = 68.283149 kcal Electronic energy + Delta-G solvation = -22426.668604 eV Core-core repulsion = 18756.655547 eV Total energy + Delta-G solvation = -3670.013057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.123 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.78560 -40.59225 -38.90342 -37.66296 -34.17551 -33.79022 -33.71221 -31.83550 -31.21035 -29.72057 -25.98886 -25.87363 -24.80009 -23.52393 -23.12360 -20.87689 -19.87357 -19.23839 -19.13308 -17.92126 -17.57701 -16.67339 -16.28171 -15.98567 -15.54361 -15.16020 -15.00172 -14.65872 -14.44905 -14.23038 -13.70171 -13.27229 -13.08749 -12.63263 -12.53276 -12.07048 -11.58195 -11.43334 -11.17498 -11.05932 -11.03881 -10.83973 -10.66970 -10.37092 -10.32837 -10.19921 -10.08100 -9.48681 -9.14300 -8.79318 -8.18155 -7.93439 -6.39477 -3.79973 1.05106 1.81669 2.25428 2.71364 3.16396 3.17681 3.27884 3.35339 3.92803 3.94867 4.03979 4.13848 4.25284 4.42466 4.57269 4.86444 5.03194 5.21477 5.39236 5.41866 5.53397 5.63534 5.68481 5.68991 5.73621 5.90155 6.03904 6.28007 6.31850 6.41412 6.53499 7.12654 7.29031 7.57572 7.68820 8.02555 8.08940 8.64974 9.21259 9.57646 10.10205 10.78586 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.026624 B = 0.002734 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.431864 B =10239.037806 C =10933.932837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.568 5.568 10 C 0.447 3.553 11 O -0.575 6.575 12 C 0.007 3.993 13 N -0.440 5.440 14 C -0.008 4.008 15 C 0.117 3.883 16 N -0.682 5.682 17 C 0.617 3.383 18 O -0.513 6.513 19 C 0.153 3.847 20 N -0.462 5.462 21 C 0.195 3.805 22 N -0.398 5.398 23 H 0.453 0.547 24 N -0.270 5.270 25 C -0.013 4.013 26 H 0.270 0.730 27 H 0.391 0.609 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.416 0.584 34 H 0.231 0.769 35 H 0.091 0.909 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.350 -21.004 2.657 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.120 0.880 9 N -0.205 5.205 10 C 0.232 3.768 11 O -0.458 6.458 12 C -0.125 4.125 13 N -0.162 5.162 14 C -0.139 4.139 15 C 0.011 3.989 16 N -0.334 5.334 17 C 0.398 3.602 18 O -0.384 6.384 19 C -0.128 4.128 20 N -0.187 5.187 21 C -0.103 4.103 22 N -0.121 5.121 23 H 0.299 0.701 24 N -0.111 5.111 25 C -0.143 4.143 26 H 0.080 0.920 27 H 0.224 0.776 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.253 0.747 34 H 0.247 0.753 35 H 0.109 0.891 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.758 -20.604 2.324 22.508 hybrid contribution -0.043 0.926 0.423 1.019 sum 8.715 -19.678 2.747 21.696 Atomic orbital electron populations 1.69620 1.05913 1.27970 1.51011 1.25249 0.95636 0.99670 0.97497 0.85810 0.79711 0.81213 0.77677 1.19253 1.20784 1.20780 1.19736 0.93351 0.82241 1.47274 0.87958 1.41880 1.09134 1.04602 1.64935 1.19675 0.88390 0.84393 0.84337 1.90527 1.13675 1.86972 1.54609 1.22512 0.94708 0.93067 1.02174 1.68850 1.30623 1.00099 1.16654 1.24389 1.03875 0.93197 0.92395 1.22026 0.84306 0.95478 0.97085 1.45232 1.21943 1.37121 1.29104 1.16258 0.81109 0.79523 0.83282 1.90832 1.65640 1.58543 1.23433 1.23815 0.99076 0.97559 0.92323 1.71312 1.03327 1.16310 1.27727 1.26757 0.99747 0.97266 0.86533 1.45156 1.17213 1.26671 1.23031 0.70071 1.74334 0.97651 1.18659 1.20483 1.24300 0.97731 0.91899 1.00357 0.91985 0.77562 0.89293 0.92030 0.90177 0.89012 0.86778 0.74708 0.75262 0.89113 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 9 N -0.57 -14.54 5.29 -10.96 -0.06 -14.60 16 10 C 0.45 10.69 7.85 -10.98 -0.09 10.61 16 11 O -0.57 -15.99 16.01 5.54 0.09 -15.90 16 12 C 0.01 0.13 5.30 -4.98 -0.03 0.10 16 13 N -0.44 -7.07 5.82 -246.13 -1.43 -8.50 16 14 C -0.01 -0.12 7.53 -7.56 -0.06 -0.18 16 15 C 0.12 1.45 4.59 -67.72 -0.31 1.14 16 16 N -0.68 -8.75 5.39 -54.48 -0.29 -9.05 16 17 C 0.62 8.93 7.83 -12.32 -0.10 8.83 16 18 O -0.51 -8.87 16.68 5.31 0.09 -8.79 16 19 C 0.15 1.99 7.96 -156.35 -1.24 0.74 16 20 N -0.46 -5.57 11.41 -12.36 -0.14 -5.71 16 21 C 0.19 1.24 13.14 -90.48 -1.19 0.05 16 22 N -0.40 -2.40 6.93 29.56 0.20 -2.19 16 23 H 0.45 0.70 8.96 -190.21 -1.70 -1.00 16 24 N -0.27 -2.84 11.98 32.07 0.38 -2.46 16 25 C -0.01 -0.15 7.45 -7.55 -0.06 -0.21 16 26 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 27 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 28 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 29 H 0.06 0.95 7.30 -51.93 -0.38 0.57 16 30 H 0.08 1.06 7.42 -51.93 -0.39 0.68 16 31 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 32 H 0.11 1.34 7.45 -51.93 -0.39 0.96 16 33 H 0.42 5.16 8.46 -40.82 -0.35 4.81 16 34 H 0.23 0.18 8.06 -52.49 -0.42 -0.25 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.80 7.91 -51.93 -0.41 0.39 16 LS Contribution 323.55 15.07 4.88 4.88 Total: -1.00 -38.39 323.55 -9.02 -47.41 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -5.13 Total: 9.67 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: -3.31 Total: 13.03 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: -0.61 Total: -66.56 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: 0.18 Total: -24.69 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -38.39 -9.02 -47.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692245374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.695 kcal (2) G-P(sol) polarization free energy of solvation -38.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds