Wall clock time and date at job start Fri Apr 10 2020 17:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 119.99831 * 2 1 4 4 H 1.48496 * 109.47689 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47204 * 120.00551 * 3 2 1 6 6 H 1.48509 * 109.47031 * 239.99867 * 3 2 1 7 7 C 1.37879 * 119.99946 * 180.27525 * 2 1 3 8 8 H 1.07997 * 120.00418 * 179.71911 * 7 2 1 9 9 C 1.50706 * 119.99992 * 359.72514 * 7 2 1 10 10 N 1.46498 * 109.47028 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97661 * 124.71590 * 10 9 7 12 12 C 1.35239 * 107.85733 * 179.89417 * 11 10 9 13 13 C 1.40394 * 107.86963 * 0.36872 * 12 11 10 14 14 N 1.40199 * 125.97490 * 179.80828 * 13 12 11 15 15 C 1.34772 * 119.99913 * 359.97438 * 14 13 12 16 16 O 1.21597 * 120.00040 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00211 * 179.97438 * 15 14 13 18 18 C 1.46507 * 119.99877 * 174.97778 * 17 15 14 19 19 C 1.52997 * 112.84973 * 293.95948 * 18 17 15 20 20 O 1.42904 * 109.47370 * 304.07480 * 19 18 17 21 21 C 1.53779 * 113.61057 * 162.66077 * 18 17 15 22 22 C 1.53784 * 87.08080 * 270.88187 * 21 18 17 23 23 C 1.53775 * 113.61543 * 65.16366 * 18 17 15 24 24 N 1.31208 * 108.05786 * 359.77027 * 13 12 11 25 25 H 0.97006 * 119.99809 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46768 * 299.99793 * 9 7 2 27 27 H 1.09001 * 109.47031 * 59.99955 * 9 7 2 28 28 H 1.07998 * 126.06657 * 0.02562 * 11 10 9 29 29 H 1.08006 * 126.06658 * 180.11405 * 12 11 10 30 30 H 0.96996 * 120.00076 * 179.97438 * 14 13 12 31 31 H 0.96994 * 120.00186 * 354.98028 * 17 15 14 32 32 H 1.09005 * 109.46565 * 64.07258 * 19 18 17 33 33 H 1.09003 * 109.47118 * 184.07009 * 19 18 17 34 34 H 0.96700 * 113.99442 * 180.02562 * 20 19 18 35 35 H 1.08998 * 113.61922 * 25.42463 * 21 18 17 36 36 H 1.09004 * 113.61632 * 156.33948 * 21 18 17 37 37 H 1.08997 * 113.61633 * 220.02309 * 22 21 18 38 38 H 1.08997 * 113.61722 * 89.11488 * 22 21 18 39 39 H 1.09005 * 113.61432 * 203.66559 * 23 18 17 40 40 H 1.09003 * 113.61633 * 334.56057 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6963 -1.2126 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0057 10 7 2.2030 -3.6127 -0.0130 11 6 2.2495 -4.6219 0.8820 12 6 3.2637 -5.4435 0.5281 13 6 3.8667 -4.9125 -0.6232 14 7 4.9597 -5.4616 -1.3083 15 6 5.5265 -6.6026 -0.8686 16 8 5.0896 -7.1560 0.1220 17 7 6.5769 -7.1308 -1.5275 18 6 7.2622 -8.3084 -0.9892 19 6 7.9784 -8.0263 0.3331 20 8 8.8904 -6.9401 0.1586 21 6 8.1372 -9.0378 -2.0223 22 6 6.8893 -9.8619 -2.3808 23 6 6.3849 -9.5709 -0.9575 24 7 3.2280 -3.8129 -0.9465 25 1 -0.4850 -0.8401 0.0004 26 1 0.6281 -2.5591 0.8867 27 1 0.6206 -2.5548 -0.8933 28 1 1.5920 -4.7515 1.7289 29 1 3.5602 -6.3458 1.0426 30 1 5.3080 -5.0204 -2.0988 31 1 6.8791 -6.7312 -2.3581 32 1 7.2442 -7.7655 1.0954 33 1 8.5270 -8.9148 0.6459 34 1 9.3809 -6.7061 0.9584 35 1 8.4837 -8.3957 -2.8321 36 1 8.9376 -9.6288 -1.5772 37 1 7.0994 -10.9159 -2.5626 38 1 6.2773 -9.4105 -3.1616 39 1 6.7062 -10.3076 -0.2212 40 1 5.3167 -9.3593 -0.9075 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178168326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:07 Heat of formation + Delta-G solvation = 29.525544 kcal Electronic energy + Delta-G solvation = -23407.690783 eV Core-core repulsion = 19839.537413 eV Total energy + Delta-G solvation = -3568.153370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.01101 -40.26406 -38.52426 -36.34728 -34.70480 -33.76412 -33.08094 -30.66570 -29.32384 -28.19742 -26.22862 -26.02858 -23.54982 -22.80486 -21.84285 -20.61920 -19.85514 -19.30883 -18.01706 -17.42491 -17.15471 -16.68727 -16.12690 -15.73687 -15.16028 -14.86362 -14.60451 -14.29251 -14.04956 -13.98184 -13.76104 -13.14534 -12.70519 -12.61364 -12.40707 -12.23263 -11.92707 -11.79508 -11.25904 -11.15484 -11.09892 -10.79463 -10.69477 -10.37809 -10.25229 -10.14594 -9.95337 -9.61001 -9.15560 -8.95138 -8.56196 -8.14122 -7.43499 -6.56125 -4.29932 2.34605 2.63127 3.09623 3.39135 3.40941 3.51779 3.60661 3.81015 3.82796 4.17410 4.25048 4.42717 4.43807 4.58594 4.77144 5.11276 5.17282 5.19416 5.35860 5.36653 5.47216 5.54777 5.57971 5.73903 5.78458 5.88179 5.95138 6.20991 6.41917 6.49538 6.51748 6.70131 6.80592 7.02321 7.42073 7.46752 7.66452 7.88173 7.96581 8.37280 8.59230 8.62460 8.66959 9.38260 10.81351 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.028491 B = 0.003041 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.520792 B = 9204.807114 C = 9616.625457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.022 3.978 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.607 4.607 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.320 5.320 11 C 0.049 3.951 12 C -0.283 4.283 13 C 0.279 3.721 14 N -0.644 5.644 15 C 0.719 3.281 16 O -0.567 6.567 17 N -0.716 5.716 18 C 0.178 3.822 19 C 0.073 3.927 20 O -0.568 6.568 21 C -0.131 4.131 22 C -0.142 4.142 23 C -0.136 4.136 24 N -0.306 5.306 25 H 0.267 0.733 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.167 0.833 29 H 0.162 0.838 30 H 0.406 0.594 31 H 0.399 0.601 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.377 0.623 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.924 -19.348 -2.209 25.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.645 4.645 8 H 0.082 0.918 9 C 0.132 3.868 10 N -0.101 5.101 11 C -0.100 4.100 12 C -0.315 4.315 13 C 0.025 3.975 14 N -0.294 5.294 15 C 0.418 3.582 16 O -0.443 6.443 17 N -0.371 5.371 18 C 0.090 3.910 19 C -0.007 4.007 20 O -0.373 6.373 21 C -0.169 4.169 22 C -0.179 4.179 23 C -0.175 4.175 24 N -0.137 5.137 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.184 0.816 29 H 0.180 0.820 30 H 0.241 0.759 31 H 0.233 0.767 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.224 0.776 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.924 -17.165 -2.722 22.908 hybrid contribution 0.749 -1.825 0.391 2.011 sum 15.674 -18.990 -2.331 24.733 Atomic orbital electron populations 1.70852 1.06777 1.30416 1.46065 1.25923 0.96319 1.02805 0.93167 0.83419 0.74796 0.74559 0.76845 1.20540 1.21248 1.21140 1.22117 0.95399 0.90476 1.56556 0.91847 1.19736 0.86325 0.82860 0.97905 1.48749 1.23499 1.19561 1.18324 1.22548 1.00529 0.90242 0.96731 1.21514 1.02062 1.06327 1.01570 1.18785 0.90658 0.93864 0.94195 1.41398 1.31750 1.24833 1.31377 1.15558 0.79744 0.79977 0.82885 1.90834 1.64461 1.62122 1.26843 1.44517 1.33020 1.31961 1.27635 1.21054 0.92577 0.84521 0.92874 1.22526 0.91646 0.89176 0.97309 1.86463 1.58033 1.53379 1.39409 1.23181 0.96965 0.98344 0.98398 1.22879 0.97198 1.00400 0.97453 1.23224 1.01537 0.95664 0.97054 1.77348 1.03788 1.16340 1.16212 0.92282 0.93665 0.94849 0.81618 0.82042 0.75895 0.76680 0.91972 0.92955 0.77617 0.90727 0.88660 0.91021 0.90011 0.89215 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.63 13.65 55.43 0.76 -25.87 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 25.19 29.90 -169.99 -5.08 20.11 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.61 -17.34 9.24 -34.44 -0.32 -17.66 16 8 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.25 6.44 5.57 -5.19 -0.03 6.41 16 10 N -0.32 -7.63 3.67 -62.56 -0.23 -7.86 16 11 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 12 C -0.28 -5.76 9.60 -39.84 -0.38 -6.14 16 13 C 0.28 5.79 8.11 -154.36 -1.25 4.54 16 14 N -0.64 -10.44 5.46 -15.51 -0.08 -10.52 16 15 C 0.72 10.84 8.09 -86.92 -0.70 10.14 16 16 O -0.57 -9.97 11.36 5.28 0.06 -9.91 16 17 N -0.72 -7.91 5.04 -51.66 -0.26 -8.17 16 18 C 0.18 1.72 0.74 -131.01 -0.10 1.62 16 19 C 0.07 0.72 6.27 37.16 0.23 0.95 16 20 O -0.57 -5.79 13.55 -35.23 -0.48 -6.26 16 21 C -0.13 -0.93 7.37 -25.92 -0.19 -1.12 16 22 C -0.14 -1.02 7.99 -25.92 -0.21 -1.23 16 23 C -0.14 -1.25 6.95 -25.92 -0.18 -1.43 16 24 N -0.31 -7.26 12.42 31.44 0.39 -6.87 16 25 H 0.27 7.67 7.22 -40.82 -0.29 7.38 16 26 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 27 H 0.03 0.89 8.00 -51.93 -0.42 0.48 16 28 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 29 H 0.16 3.19 5.91 -52.48 -0.31 2.88 16 30 H 0.41 5.48 8.84 -40.82 -0.36 5.12 16 31 H 0.40 3.50 8.68 -40.82 -0.35 3.15 16 32 H 0.06 0.76 7.17 -51.93 -0.37 0.39 16 33 H 0.05 0.39 8.10 -51.93 -0.42 -0.03 16 34 H 0.38 2.40 9.12 45.56 0.42 2.81 16 35 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 36 H 0.09 0.56 8.07 -51.93 -0.42 0.14 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.08 1.01 7.18 -51.93 -0.37 0.63 16 LS Contribution 337.78 15.07 5.09 5.09 Total: -1.00 -35.09 337.78 -7.89 -42.98 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -4.63 Total: 9.87 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -3.42 Total: -2.58 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.57 Total: -59.30 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.42 Total: -16.17 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.09 -7.89 -42.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178168326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.504 kcal (2) G-P(sol) polarization free energy of solvation -35.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds