Wall clock time and date at job start Fri Apr 10 2020 17:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35976 * 117.00045 * 2 1 4 4 C 1.38722 * 120.00350 * 0.02562 * 3 2 1 5 5 C 1.38108 * 120.00185 * 179.97438 * 4 3 2 6 6 C 1.38720 * 120.00034 * 0.02562 * 5 4 3 7 7 O 1.35981 * 119.99818 * 180.02562 * 6 5 4 8 8 C 1.38681 * 120.00126 * 359.97438 * 6 5 4 9 9 C 1.50692 * 120.00190 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47142 * 40.00212 * 9 8 6 11 11 C 1.52993 * 109.47298 * 280.00044 * 9 8 6 12 12 N 1.46901 * 109.46945 * 159.99865 * 9 8 6 13 13 C 1.46905 * 110.99870 * 205.00102 * 12 9 8 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 9 15 15 O 1.21297 * 120.00124 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00196 * 180.02562 * 14 13 12 17 17 C 1.37100 * 120.00290 * 180.02562 * 16 14 13 18 18 H 1.07990 * 119.99768 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99812 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99431 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00178 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46962 * 90.00013 * 21 19 17 23 23 H 1.48492 * 109.47027 * 209.99821 * 21 19 17 24 24 H 1.48499 * 109.47203 * 329.99939 * 21 19 17 25 25 C 1.38158 * 119.99528 * 0.27438 * 8 6 5 26 26 H 1.09007 * 109.46839 * 300.00019 * 1 2 3 27 27 H 1.09003 * 109.47320 * 59.99276 * 1 2 3 28 28 H 1.09000 * 109.47757 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.99839 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.99922 * 179.97438 * 5 4 3 31 31 H 0.96691 * 114.00266 * 269.97817 * 7 6 5 32 32 H 1.09004 * 109.47587 * 180.02562 * 11 9 8 33 33 H 1.09000 * 109.47161 * 300.00156 * 11 9 8 34 34 H 1.09006 * 109.47343 * 60.00098 * 11 9 8 35 35 H 1.00901 * 111.00067 * 328.95277 * 12 9 8 36 36 H 1.09001 * 109.46798 * 300.00327 * 13 12 9 37 37 H 1.08998 * 109.46961 * 60.00043 * 13 12 9 38 38 H 0.97009 * 119.99629 * 359.97438 * 16 14 13 39 39 H 0.96997 * 119.99251 * 180.02562 * 20 19 17 40 40 H 1.07999 * 119.99735 * 179.69811 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6055 0.0011 6 6 3.3032 3.6781 0.0005 7 8 3.9206 4.8897 0.0016 8 6 4.0585 2.5150 0.0000 9 6 5.5634 2.5938 0.0000 10 1 5.8851 3.3987 0.6609 11 6 6.0596 2.8713 -1.4204 12 7 6.1204 1.3195 0.4731 13 6 7.4596 1.5107 1.0459 14 6 7.9977 0.1849 1.5188 15 8 7.3314 -0.8205 1.3907 16 7 9.2193 0.1162 2.0839 17 6 9.7091 -1.0901 2.5136 18 1 9.1158 -1.9852 2.3996 19 6 10.9684 -1.1606 3.0967 20 7 11.4376 -2.3169 3.5090 21 14 11.9943 0.3879 3.2945 22 1 11.6950 1.0156 4.6066 23 1 13.4360 0.0380 3.2306 24 1 11.6673 1.3410 2.2037 25 6 3.4312 1.2841 -0.0057 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 0.2123 2.3185 0.0005 30 1 1.3298 4.5113 0.0011 31 1 4.0991 5.2410 -0.8814 32 1 7.1482 2.9278 -1.4205 33 1 5.7379 2.0664 -2.0813 34 1 5.6463 3.8169 -1.7715 35 1 5.5022 0.8793 1.1381 36 1 8.1243 1.9222 0.2863 37 1 7.3995 2.2001 1.8881 38 1 9.7524 0.9203 2.1859 39 1 12.3165 -2.3660 3.9164 40 1 4.0194 0.3783 -0.0111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182434515.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:11 Heat of formation + Delta-G solvation = -79.012078 kcal Electronic energy + Delta-G solvation = -23150.374639 eV Core-core repulsion = 19545.221974 eV Total energy + Delta-G solvation = -3605.152665 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.63630 -38.92520 -38.37048 -36.59558 -35.56929 -33.91531 -31.77597 -31.45937 -30.26285 -28.72369 -27.32220 -26.62960 -24.14194 -23.39834 -22.17759 -20.42633 -19.40593 -18.63433 -18.27606 -17.85962 -16.77888 -16.11018 -15.96105 -15.52112 -15.42767 -15.03021 -14.64074 -14.46447 -14.00139 -13.77525 -13.50253 -13.26219 -12.93357 -12.70715 -12.63022 -12.50638 -12.15912 -11.99748 -11.92179 -11.73012 -11.61230 -11.19922 -10.99969 -10.98454 -10.56592 -10.43134 -9.94268 -9.53687 -9.05770 -8.54807 -8.22078 -8.15622 -8.10602 -6.27834 -3.79014 1.05574 1.15161 3.05655 3.08578 3.09603 3.17586 3.40663 3.78427 4.03217 4.11851 4.14157 4.49480 4.58660 4.84142 4.87390 4.90394 4.94873 5.22136 5.23204 5.24876 5.29309 5.39006 5.40979 5.62684 5.69157 5.82177 5.86041 5.88932 5.96371 5.98829 6.14089 6.25280 6.31704 6.43081 7.13259 7.19360 7.50151 7.58347 7.62135 8.18293 8.63532 8.98592 9.46136 9.86753 10.85414 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.003304 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.768250 B = 8473.026036 C = 9466.379147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.122 3.878 4 C -0.199 4.199 5 C -0.106 4.106 6 C 0.069 3.931 7 O -0.493 6.493 8 C -0.068 4.068 9 C 0.125 3.875 10 H 0.062 0.938 11 C -0.132 4.132 12 N -0.664 5.664 13 C 0.047 3.953 14 C 0.451 3.549 15 O -0.563 6.563 16 N -0.591 5.591 17 C -0.304 4.304 18 H 0.120 0.880 19 C 0.041 3.959 20 N -0.882 5.882 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.123 4.123 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.384 0.616 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.354 0.646 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.017 15.466 -9.127 26.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.077 3.923 4 C -0.218 4.218 5 C -0.125 4.125 6 C 0.024 3.976 7 O -0.303 6.303 8 C -0.069 4.069 9 C 0.015 3.985 10 H 0.080 0.920 11 C -0.190 4.190 12 N -0.298 5.298 13 C -0.086 4.086 14 C 0.237 3.763 15 O -0.445 6.445 16 N -0.231 5.231 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.522 5.522 21 Si 0.706 3.294 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.142 4.142 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.239 0.761 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.175 0.825 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.203 0.797 39 H 0.083 0.917 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -19.003 14.198 -9.105 25.408 hybrid contribution 0.509 1.818 0.592 1.979 sum -18.493 16.017 -8.513 25.904 Atomic orbital electron populations 1.23061 0.78558 1.04053 1.01118 1.86159 1.21180 1.26609 1.88564 1.19038 0.92310 0.84221 0.96744 1.21092 1.00011 0.91845 1.08813 1.21100 0.93652 0.97677 1.00072 1.18105 0.89968 0.84432 1.05080 1.84862 1.79906 1.32318 1.33181 1.20087 0.95797 0.91932 0.99055 1.20340 0.88371 0.92028 0.97731 0.92023 1.21730 1.01377 1.00781 0.95115 1.60288 1.03394 1.21351 1.44797 1.21767 0.91887 0.96521 0.98404 1.19694 0.83064 0.90065 0.83500 1.90568 1.58484 1.36619 1.58834 1.42202 1.15708 1.09697 1.55475 1.19440 1.01130 0.86961 1.35752 0.86275 1.25038 0.96821 0.97050 0.97280 1.69626 1.18843 1.23662 1.40118 0.86668 0.80871 0.82978 0.78863 1.19680 1.20209 1.19443 1.20421 0.91247 0.98978 1.03531 0.92719 0.92776 0.88145 0.85249 0.85284 0.76140 0.91950 0.91619 0.93061 0.82498 0.89356 0.93600 0.79694 0.91654 0.82952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.76 10.50 -19.66 -0.21 -3.97 16 3 C 0.12 1.50 6.69 -39.24 -0.26 1.23 16 4 C -0.20 -1.99 9.03 -39.45 -0.36 -2.35 16 5 C -0.11 -1.05 9.98 -39.45 -0.39 -1.45 16 6 C 0.07 0.77 6.67 -39.24 -0.26 0.51 16 7 O -0.49 -4.80 12.66 -19.68 -0.25 -5.05 16 8 C -0.07 -0.85 5.00 -104.49 -0.52 -1.37 16 9 C 0.13 1.61 2.49 -68.87 -0.17 1.44 16 10 H 0.06 0.80 7.51 -51.93 -0.39 0.41 16 11 C -0.13 -1.47 9.39 37.15 0.35 -1.12 16 12 N -0.66 -10.72 5.23 -109.23 -0.57 -11.29 16 13 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 14 C 0.45 10.45 7.82 -10.99 -0.09 10.37 16 15 O -0.56 -15.39 15.78 5.54 0.09 -15.30 16 16 N -0.59 -14.34 5.09 -10.96 -0.06 -14.39 16 17 C -0.30 -8.74 10.16 -14.93 -0.15 -8.89 16 18 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 19 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 20 N -0.88 -26.10 13.96 55.50 0.77 -25.32 16 21 Si 0.88 19.63 27.74 -169.99 -4.71 14.91 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 25 C -0.12 -1.66 8.80 -39.45 -0.35 -2.01 16 26 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 27 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.13 0.96 6.29 -52.48 -0.33 0.63 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.38 2.04 8.63 45.56 0.39 2.44 16 32 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.43 7.63 -51.93 -0.40 0.04 16 35 H 0.35 6.09 6.69 -39.29 -0.26 5.83 16 36 H 0.09 1.35 7.44 -51.93 -0.39 0.96 16 37 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 38 H 0.37 7.88 5.76 -40.82 -0.24 7.65 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 40 H 0.15 2.30 6.72 -52.49 -0.35 1.95 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -34.74 336.52 -5.59 -40.32 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -4.38 Total: 15.66 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -1.34 Total: -0.63 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.15 Total: -51.01 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.37 Total: -24.32 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.91 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.74 -5.59 -40.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182434515.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.691 kcal (2) G-P(sol) polarization free energy of solvation -34.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds