Wall clock time and date at job start Fri Apr 10 2020 17:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35976 * 117.00045 * 2 1 4 4 C 1.38722 * 120.00350 * 0.02562 * 3 2 1 5 5 C 1.38108 * 120.00185 * 179.97438 * 4 3 2 6 6 C 1.38720 * 120.00034 * 0.02562 * 5 4 3 7 7 O 1.35981 * 119.99818 * 180.02562 * 6 5 4 8 8 C 1.38681 * 120.00126 * 359.97438 * 6 5 4 9 9 C 1.50692 * 120.00190 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47142 * 40.00212 * 9 8 6 11 11 C 1.52993 * 109.47298 * 280.00044 * 9 8 6 12 12 N 1.46901 * 109.46945 * 159.99865 * 9 8 6 13 13 C 1.46905 * 110.99870 * 205.00102 * 12 9 8 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 9 15 15 O 1.21297 * 120.00124 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00196 * 180.02562 * 14 13 12 17 17 C 1.37100 * 120.00290 * 180.02562 * 16 14 13 18 18 H 1.07990 * 119.99768 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99812 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99431 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00178 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46962 * 90.00013 * 21 19 17 23 23 H 1.48492 * 109.47027 * 209.99821 * 21 19 17 24 24 H 1.48499 * 109.47203 * 329.99939 * 21 19 17 25 25 C 1.38158 * 119.99528 * 0.27438 * 8 6 5 26 26 H 1.09007 * 109.46839 * 300.00019 * 1 2 3 27 27 H 1.09003 * 109.47320 * 59.99276 * 1 2 3 28 28 H 1.09000 * 109.47757 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.99839 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.99922 * 179.97438 * 5 4 3 31 31 H 0.96691 * 114.00266 * 269.97817 * 7 6 5 32 32 H 1.09004 * 109.47587 * 180.02562 * 11 9 8 33 33 H 1.09000 * 109.47161 * 300.00156 * 11 9 8 34 34 H 1.09006 * 109.47343 * 60.00098 * 11 9 8 35 35 H 1.00901 * 111.00067 * 328.95277 * 12 9 8 36 36 H 1.09001 * 109.46798 * 300.00327 * 13 12 9 37 37 H 1.08998 * 109.46961 * 60.00043 * 13 12 9 38 38 H 0.97009 * 119.99629 * 359.97438 * 16 14 13 39 39 H 0.96997 * 119.99251 * 180.02562 * 20 19 17 40 40 H 1.07999 * 119.99735 * 179.69811 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6055 0.0011 6 6 3.3032 3.6781 0.0005 7 8 3.9206 4.8897 0.0016 8 6 4.0585 2.5150 0.0000 9 6 5.5634 2.5938 0.0000 10 1 5.8851 3.3987 0.6609 11 6 6.0596 2.8713 -1.4204 12 7 6.1204 1.3195 0.4731 13 6 7.4596 1.5107 1.0459 14 6 7.9977 0.1849 1.5188 15 8 7.3314 -0.8205 1.3907 16 7 9.2193 0.1162 2.0839 17 6 9.7091 -1.0901 2.5136 18 1 9.1158 -1.9852 2.3996 19 6 10.9684 -1.1606 3.0967 20 7 11.4376 -2.3169 3.5090 21 14 11.9943 0.3879 3.2945 22 1 11.6950 1.0156 4.6066 23 1 13.4360 0.0380 3.2306 24 1 11.6673 1.3410 2.2037 25 6 3.4312 1.2841 -0.0057 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 0.2123 2.3185 0.0005 30 1 1.3298 4.5113 0.0011 31 1 4.0991 5.2410 -0.8814 32 1 7.1482 2.9278 -1.4205 33 1 5.7379 2.0664 -2.0813 34 1 5.6463 3.8169 -1.7715 35 1 5.5022 0.8793 1.1381 36 1 8.1243 1.9222 0.2863 37 1 7.3995 2.2001 1.8881 38 1 9.7524 0.9203 2.1859 39 1 12.3165 -2.3660 3.9164 40 1 4.0194 0.3783 -0.0111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182434515.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:11 Heat of formation + Delta-G solvation = -108.185265 kcal Electronic energy + Delta-G solvation = -23151.639684 eV Core-core repulsion = 19545.221974 eV Total energy + Delta-G solvation = -3606.417710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47641 -40.33287 -39.60282 -37.64525 -36.49569 -35.94414 -33.77448 -32.70025 -31.13232 -29.56442 -28.33556 -27.88609 -25.81836 -24.37418 -23.09742 -21.36405 -21.31124 -20.36344 -19.21575 -18.87462 -17.77036 -17.53037 -17.03785 -16.71353 -16.61779 -16.25452 -15.87676 -15.61908 -15.28830 -15.04701 -14.71690 -14.59098 -14.43056 -13.97140 -13.68828 -13.66665 -13.34573 -13.19789 -12.99122 -12.85118 -12.70737 -12.41827 -12.33414 -12.02850 -11.97809 -11.73489 -11.52018 -11.23491 -10.46007 -10.25712 -9.91291 -9.41654 -8.99475 -8.41786 -6.02916 0.22001 0.32107 1.30478 1.35645 1.44867 1.94304 2.23067 2.36890 2.58016 2.68646 3.14468 3.32225 3.39335 3.60834 3.83784 4.12097 4.14001 4.26874 4.32093 4.37272 4.40056 4.47823 4.49746 4.54482 4.59904 4.72858 4.85117 4.98365 5.02417 5.15447 5.30635 5.37484 5.41938 5.52678 5.61384 5.90808 6.06182 6.28992 6.42878 6.59108 6.87109 6.91131 7.38575 7.95315 8.76027 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.003304 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.768250 B = 8473.026036 C = 9466.379147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.107 3.893 4 C -0.191 4.191 5 C -0.103 4.103 6 C 0.072 3.928 7 O -0.498 6.498 8 C -0.079 4.079 9 C 0.129 3.871 10 H 0.070 0.930 11 C -0.129 4.129 12 N -0.680 5.680 13 C 0.061 3.939 14 C 0.449 3.551 15 O -0.614 6.614 16 N -0.589 5.589 17 C -0.330 4.330 18 H 0.054 0.946 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.966 3.034 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.230 1.230 25 C -0.148 4.148 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.405 0.595 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.343 0.657 36 H 0.117 0.883 37 H 0.076 0.924 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.519 20.132 -9.719 29.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.062 3.938 4 C -0.209 4.209 5 C -0.121 4.121 6 C 0.027 3.973 7 O -0.311 6.311 8 C -0.080 4.080 9 C 0.020 3.980 10 H 0.088 0.912 11 C -0.187 4.187 12 N -0.314 5.314 13 C -0.071 4.071 14 C 0.236 3.764 15 O -0.498 6.498 16 N -0.231 5.231 17 C -0.460 4.460 18 H 0.072 0.928 19 C -0.214 4.214 20 N -0.575 5.575 21 Si 0.786 3.214 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.153 1.153 25 C -0.168 4.168 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.131 0.869 29 H 0.176 0.824 30 H 0.176 0.824 31 H 0.263 0.737 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.163 0.837 36 H 0.135 0.865 37 H 0.093 0.907 38 H 0.226 0.774 39 H 0.089 0.911 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.521 18.900 -9.731 28.862 hybrid contribution 0.517 0.267 0.746 0.946 sum -19.004 19.168 -8.985 28.448 Atomic orbital electron populations 1.23361 0.76298 1.05475 1.02509 1.86119 1.23691 1.27124 1.88720 1.19182 0.92114 0.85179 0.97340 1.21383 1.01312 0.90971 1.07269 1.21435 0.93405 0.98602 0.98656 1.18124 0.90429 0.84310 1.04439 1.84812 1.79778 1.31373 1.35105 1.20080 0.95651 0.92200 1.00066 1.20407 0.88742 0.90265 0.98579 0.91237 1.21738 1.01567 1.01751 0.93645 1.60323 1.02969 1.23655 1.44480 1.21697 0.92635 0.92590 1.00198 1.20938 0.82065 0.91912 0.81444 1.90549 1.59707 1.39361 1.60230 1.42010 1.16458 1.08813 1.55843 1.19017 1.01699 0.87034 1.38204 0.92786 1.26137 0.97696 1.01849 0.95670 1.69810 1.19738 1.27125 1.40842 0.85349 0.77862 0.77694 0.80524 1.18148 1.19911 1.15348 1.20299 0.92094 0.98487 1.05874 0.91480 0.91054 0.86934 0.82444 0.82445 0.73714 0.91735 0.93290 0.89947 0.83749 0.86474 0.90661 0.77409 0.91103 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -8.45 10.50 -93.28 -0.98 -9.43 16 3 C 0.11 2.62 6.69 22.49 0.15 2.77 16 4 C -0.19 -3.40 9.03 22.35 0.20 -3.20 16 5 C -0.10 -1.71 9.98 22.35 0.22 -1.49 16 6 C 0.07 1.42 6.67 22.49 0.15 1.57 16 7 O -0.50 -7.87 12.66 -93.34 -1.18 -9.05 16 8 C -0.08 -1.91 5.00 -19.78 -0.10 -2.01 16 9 C 0.13 3.13 2.49 44.16 0.11 3.24 16 10 H 0.07 1.59 7.51 -2.39 -0.02 1.57 16 11 C -0.13 -2.59 9.39 71.98 0.68 -1.92 16 12 N -0.68 -22.00 5.23 -499.48 -2.61 -24.62 16 13 C 0.06 1.99 5.97 85.55 0.51 2.50 16 14 C 0.45 21.13 7.82 87.66 0.69 21.82 16 15 O -0.61 -35.52 15.78 -3.08 -0.05 -35.57 16 16 N -0.59 -28.65 5.09 -306.99 -1.56 -30.21 16 17 C -0.33 -19.85 10.16 84.04 0.85 -19.00 16 18 H 0.05 3.87 7.39 -2.92 -0.02 3.84 16 19 C -0.01 -0.85 5.50 84.93 0.47 -0.38 16 20 N -0.93 -57.29 13.96 21.67 0.30 -56.99 16 21 Si 0.97 39.40 27.74 68.60 1.90 41.31 16 22 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 25 C -0.15 -4.17 8.80 22.36 0.20 -3.98 16 26 H 0.07 0.73 7.66 -2.38 -0.02 0.71 16 27 H 0.07 0.70 7.66 -2.39 -0.02 0.69 16 28 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.16 1.82 6.29 -2.91 -0.02 1.80 16 30 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 31 H 0.40 2.61 8.63 -74.06 -0.64 1.97 16 32 H 0.06 1.26 7.45 -2.39 -0.02 1.24 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.11 7.63 -2.38 -0.02 1.09 16 35 H 0.34 12.36 6.69 -89.69 -0.60 11.76 16 36 H 0.12 3.19 7.44 -2.39 -0.02 3.17 16 37 H 0.08 2.06 8.05 -2.39 -0.02 2.04 16 38 H 0.39 15.63 5.76 -92.70 -0.53 15.10 16 39 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.12 4.08 6.72 -2.91 -0.02 4.06 16 Total: -1.00 -82.55 336.52 0.33 -82.22 By element: Atomic # 1 Polarization: 41.78 SS G_CDS: -0.73 Total: 41.05 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 5.24 Total: 1.27 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -3.87 Total: -111.81 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -2.21 Total: -54.04 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.90 Total: 41.31 kcal Total: -82.55 0.33 -82.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182434515.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.962 kcal (2) G-P(sol) polarization free energy of solvation -82.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds