Wall clock time and date at job start Fri Apr 10 2020 17:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09009 * 109.46389 * 2 1 4 4 O 1.42895 * 109.47386 * 240.00435 * 2 1 3 5 5 C 1.52989 * 109.47116 * 119.99695 * 2 1 3 6 6 N 1.46503 * 109.47349 * 185.00376 * 5 2 1 7 7 C 1.34771 * 120.00539 * 180.02562 * 6 5 2 8 8 O 1.21593 * 119.99638 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00655 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00309 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.47074 * 179.97438 * 10 9 7 12 12 C 1.38295 * 119.93205 * 269.73248 * 11 10 9 13 13 C 1.38105 * 120.06479 * 179.72779 * 12 11 10 14 14 C 1.38873 * 119.92954 * 0.56224 * 13 12 11 15 15 O 1.35750 * 120.06577 * 179.68492 * 14 13 12 16 16 C 1.34829 * 117.00308 * 174.48883 * 15 14 13 17 17 H 1.08010 * 119.99797 * 5.05753 * 16 15 14 18 18 C 1.38652 * 120.00665 * 185.05753 * 16 15 14 19 19 N 1.31559 * 120.00082 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99638 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46977 * 90.00407 * 20 18 16 22 22 H 1.48505 * 109.47123 * 209.99931 * 20 18 16 23 23 H 1.48493 * 109.47219 * 330.00030 * 20 18 16 24 24 C 1.38875 * 119.86683 * 359.71047 * 14 13 12 25 25 C 1.38101 * 119.93094 * 359.97438 * 24 14 13 26 26 H 1.08993 * 109.47207 * 300.00124 * 1 2 3 27 27 H 1.09004 * 109.47109 * 60.00178 * 1 2 3 28 28 H 1.08998 * 109.46912 * 179.97438 * 1 2 3 29 29 H 0.96704 * 113.99958 * 299.99317 * 4 2 1 30 30 H 1.09005 * 109.47646 * 305.00426 * 5 2 1 31 31 H 1.09004 * 109.47546 * 65.00487 * 5 2 1 32 32 H 0.96997 * 119.99899 * 0.02562 * 6 5 2 33 33 H 0.97001 * 119.99329 * 0.02562 * 9 7 6 34 34 H 1.08998 * 109.47379 * 300.00549 * 10 9 7 35 35 H 1.08997 * 109.47095 * 60.00548 * 10 9 7 36 36 H 1.08000 * 119.96834 * 359.97355 * 12 11 10 37 37 H 1.08001 * 120.03278 * 180.27292 * 13 12 11 38 38 H 0.97003 * 119.99559 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.03582 * 179.97438 * 24 14 13 40 40 H 1.07998 * 119.97005 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0400 -0.7211 1.2492 6 7 3.5001 -0.6177 1.3110 7 6 4.1731 -1.1832 2.3325 8 8 3.5685 -1.7789 3.2032 9 7 5.5164 -1.0885 2.3891 10 6 6.2479 -1.7027 3.4998 11 6 7.7243 -1.4546 3.3272 12 6 8.4990 -2.3607 2.6263 13 6 9.8512 -2.1333 2.4616 14 6 10.4350 -0.9992 3.0108 15 8 11.7651 -0.7761 2.8561 16 6 12.2464 0.3971 3.3141 17 1 11.5983 1.0738 3.8515 18 6 13.5731 0.7351 3.0954 19 7 14.0425 1.8801 3.5419 20 14 14.6941 -0.4354 2.1666 21 1 14.6354 -0.1294 0.7146 22 1 16.0888 -0.2738 2.6505 23 1 14.2494 -1.8335 2.3962 24 6 9.6554 -0.0940 3.7190 25 6 8.3026 -0.3237 3.8746 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7212 -1.5952 -1.2329 30 1 1.6054 -0.2617 2.1370 31 1 1.7517 -1.7715 1.2056 32 1 3.9824 -0.1422 0.6167 33 1 5.9987 -0.6130 1.6947 34 1 5.9132 -1.2662 4.4409 35 1 6.0590 -2.7762 3.5098 36 1 8.0454 -3.2451 2.2038 37 1 10.4549 -2.8390 1.9103 38 1 14.9709 2.1163 3.3891 39 1 10.1066 0.7887 4.1476 40 1 7.6956 0.3800 4.4249 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192443246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:24 Heat of formation + Delta-G solvation = -115.048891 kcal Electronic energy + Delta-G solvation = -22271.893438 eV Core-core repulsion = 18665.178099 eV Total energy + Delta-G solvation = -3606.715339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20899 -40.78015 -38.90790 -38.47182 -35.65926 -35.26960 -34.44039 -32.25836 -31.86309 -31.23432 -28.02395 -27.10052 -25.59805 -23.71696 -22.77010 -22.13251 -21.86776 -19.86901 -19.47894 -19.09649 -17.99384 -17.19903 -16.81960 -16.66196 -16.40260 -16.04769 -15.79295 -15.65590 -15.42928 -15.23389 -14.86285 -14.54509 -14.46678 -14.29245 -14.06913 -13.81247 -13.35088 -13.15397 -13.09796 -12.77530 -12.58060 -12.47059 -12.31710 -11.93918 -11.81093 -11.46726 -11.30566 -11.06808 -10.90940 -10.37600 -9.84703 -9.73305 -9.10829 -8.51023 -6.24055 0.47167 0.54542 1.32467 1.35598 1.52318 1.82113 2.16729 2.27484 2.74637 3.02247 3.12248 3.38255 3.55831 3.71851 3.85582 4.01606 4.09754 4.14109 4.24457 4.44820 4.54303 4.60132 4.66893 4.76611 4.82357 4.87593 4.95662 5.15005 5.22168 5.26996 5.33291 5.46450 5.52512 5.54098 5.70958 5.78645 5.88006 6.00885 6.19204 6.79932 6.83094 7.09116 7.56035 7.58623 8.60189 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.027662 B = 0.002421 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.964441 B =11564.012314 C =11842.491073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.100 3.900 3 H 0.107 0.893 4 O -0.576 6.576 5 C 0.107 3.893 6 N -0.733 5.733 7 C 0.699 3.301 8 O -0.638 6.638 9 N -0.731 5.731 10 C 0.202 3.798 11 C -0.173 4.173 12 C -0.044 4.044 13 C -0.192 4.192 14 C 0.129 3.871 15 O -0.242 6.242 16 C -0.399 4.399 17 H 0.083 0.917 18 C 0.010 3.990 19 N -0.921 5.921 20 Si 0.971 3.029 21 H -0.265 1.265 22 H -0.269 1.269 23 H -0.262 1.262 24 C -0.238 4.238 25 C -0.049 4.049 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.389 0.611 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.410 0.590 33 H 0.407 0.593 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.154 0.846 37 H 0.131 0.869 38 H 0.285 0.715 39 H 0.110 0.890 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.142 -6.038 -8.206 26.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.041 3.959 3 H 0.125 0.875 4 O -0.383 6.383 5 C -0.018 4.018 6 N -0.389 5.389 7 C 0.398 3.602 8 O -0.521 6.521 9 N -0.387 5.387 10 C 0.078 3.922 11 C -0.174 4.174 12 C -0.062 4.062 13 C -0.211 4.211 14 C 0.079 3.921 15 O -0.149 6.149 16 C -0.476 4.476 17 H 0.100 0.900 18 C -0.189 4.189 19 N -0.562 5.562 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.194 1.194 23 H -0.186 1.186 24 C -0.258 4.258 25 C -0.068 4.068 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.239 0.761 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.246 0.754 33 H 0.243 0.757 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.171 0.829 37 H 0.149 0.851 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -24.082 -6.000 -7.593 25.954 hybrid contribution 1.066 0.185 -0.274 1.116 sum -23.016 -5.815 -7.867 25.008 Atomic orbital electron populations 1.22380 0.93921 1.03689 1.03672 1.22116 0.94558 0.96644 0.82627 0.87532 1.86581 1.77576 1.30506 1.43668 1.22047 0.78746 1.01403 0.99576 1.44959 1.07911 1.59570 1.26479 1.16139 0.82019 0.79660 0.82338 1.90888 1.68847 1.50201 1.42125 1.45232 1.04436 1.59986 1.29033 1.19739 0.85503 0.98108 0.88803 1.19541 0.95032 0.97225 1.05616 1.20949 0.91321 0.98632 0.95328 1.20520 0.96154 0.97781 1.06636 1.19742 0.83108 0.95094 0.94121 1.83522 1.20071 1.37503 1.73799 1.20710 0.96816 0.94081 1.35960 0.89958 1.25296 0.97846 0.97948 0.97806 1.69731 1.17266 1.22717 1.46466 0.85212 0.77354 0.79292 0.78844 1.18998 1.19388 1.18625 1.21267 0.95658 1.02146 1.06683 1.20921 0.92780 0.96444 0.96645 0.90591 0.91025 0.91218 0.76103 0.91323 0.91727 0.75417 0.75717 0.91676 0.90818 0.82875 0.85061 0.90547 0.87257 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.16 9.53 71.98 0.69 -0.48 16 2 C 0.10 0.95 3.62 30.59 0.11 1.06 16 3 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 4 O -0.58 -6.57 13.29 -148.98 -1.98 -8.55 16 5 C 0.11 1.48 5.31 86.38 0.46 1.94 16 6 N -0.73 -12.42 5.51 -478.54 -2.64 -15.06 16 7 C 0.70 16.85 8.57 179.06 1.53 18.38 16 8 O -0.64 -20.61 16.34 -4.01 -0.07 -20.68 16 9 N -0.73 -15.75 5.55 -482.31 -2.68 -18.43 16 10 C 0.20 4.82 5.80 85.64 0.50 5.32 16 11 C -0.17 -4.75 5.25 -19.83 -0.10 -4.85 16 12 C -0.04 -1.22 9.69 22.25 0.22 -1.00 16 13 C -0.19 -6.77 9.99 22.39 0.22 -6.55 16 14 C 0.13 5.72 6.65 22.57 0.15 5.87 16 15 O -0.24 -12.70 8.59 -22.73 -0.20 -12.90 16 16 C -0.40 -22.97 9.95 67.92 0.68 -22.29 16 17 H 0.08 4.96 5.44 -2.91 -0.02 4.94 16 18 C 0.01 0.55 5.49 84.83 0.47 1.02 16 19 N -0.92 -54.23 13.96 21.61 0.30 -53.93 16 20 Si 0.97 44.50 28.62 68.60 1.96 46.46 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 24 C -0.24 -9.90 9.17 22.39 0.21 -9.70 16 25 C -0.05 -1.59 9.69 22.25 0.22 -1.37 16 26 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.39 2.19 9.05 -74.05 -0.67 1.52 16 30 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.41 5.46 8.49 -92.71 -0.79 4.67 16 33 H 0.41 7.46 8.48 -92.71 -0.79 6.68 16 34 H 0.06 1.63 8.08 -2.39 -0.02 1.61 16 35 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 36 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 37 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 38 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.11 5.06 5.64 -2.91 -0.02 5.05 16 40 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -71.67 346.47 -1.10 -72.78 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -1.15 Total: 22.96 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 5.33 Total: -12.65 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -5.01 Total: -87.42 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -2.24 Total: -42.13 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.96 Total: 46.46 kcal Total: -71.67 -1.10 -72.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192443246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.273 kcal (2) G-P(sol) polarization free energy of solvation -71.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds