Wall clock time and date at job start Fri Apr 10 2020 17:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37096 * 119.99926 * 2 1 4 4 H 1.08004 * 120.00107 * 147.60525 * 3 2 1 5 5 C 1.38952 * 119.99841 * 327.87955 * 3 2 1 6 6 N 1.31412 * 120.00006 * 159.29758 * 5 3 2 7 7 Si 1.86803 * 120.00124 * 339.29523 * 5 3 2 8 8 H 1.48505 * 109.46884 * 85.53877 * 7 5 3 9 9 H 1.48497 * 109.47201 * 205.54191 * 7 5 3 10 10 H 1.48495 * 109.46914 * 325.54328 * 7 5 3 11 11 C 1.34778 * 119.99960 * 179.97438 * 2 1 3 12 12 O 1.21294 * 119.99642 * 180.02562 * 11 2 1 13 13 C 1.50695 * 120.00268 * 0.02562 * 11 2 1 14 14 N 1.46501 * 109.47398 * 179.97438 * 13 11 2 15 15 C 1.34334 * 122.83986 * 269.70882 * 14 13 11 16 16 O 1.21229 * 125.95238 * 357.03492 * 15 14 13 17 17 C 1.50687 * 108.08662 * 176.90919 * 15 14 13 18 18 H 1.09002 * 105.82199 * 256.30503 * 17 15 14 19 19 C 1.49443 * 113.19970 * 140.29923 * 17 15 14 20 20 C 1.52523 * 113.29250 * 267.14687 * 19 17 15 21 21 C 1.53454 * 107.59567 * 305.23707 * 20 19 17 22 22 C 1.51414 * 108.63365 * 67.96932 * 21 20 19 23 23 C 1.51211 * 105.06804 * 8.15112 * 17 15 14 24 24 H 1.09002 * 109.82319 * 233.91618 * 23 17 15 25 25 C 1.34041 * 122.84569 * 89.99333 * 14 13 11 26 26 O 1.21228 * 125.59322 * 356.79201 * 25 14 13 27 27 H 1.09008 * 109.47061 * 95.22492 * 1 2 3 28 28 H 1.09001 * 109.46954 * 215.22002 * 1 2 3 29 29 H 1.09000 * 109.47399 * 335.22255 * 1 2 3 30 30 H 0.96996 * 120.00009 * 179.97438 * 6 5 3 31 31 H 1.09008 * 109.47200 * 299.99750 * 13 11 2 32 32 H 1.08996 * 109.47183 * 59.99437 * 13 11 2 33 33 H 1.08994 * 108.71622 * 28.12922 * 19 17 15 34 34 H 1.08995 * 108.71637 * 146.16317 * 19 17 15 35 35 H 1.09002 * 109.83305 * 64.76331 * 20 19 17 36 36 H 1.08997 * 109.83000 * 185.65057 * 20 19 17 37 37 H 1.09000 * 109.75113 * 188.17114 * 21 20 19 38 38 H 1.08993 * 109.75444 * 308.91069 * 21 20 19 39 39 H 1.09005 * 109.78007 * 180.92261 * 22 21 20 40 40 H 1.09003 * 107.32371 * 62.97321 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1044 1.2601 0.5011 5 6 1.6152 2.2985 -0.6398 6 7 2.0281 3.5040 -0.3187 7 14 0.3085 2.0789 -1.9566 8 1 -1.0292 1.9942 -1.3173 9 1 0.3412 3.2377 -2.8846 10 1 0.5748 0.8300 -2.7146 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 7 2.3374 -3.5858 0.0005 15 6 2.8065 -4.1433 -1.1281 16 8 2.4793 -3.8475 -2.2573 17 6 3.8124 -5.1981 -0.7459 18 1 4.7911 -4.7616 -0.9455 19 6 3.7232 -6.4294 -1.5881 20 6 2.8210 -7.5044 -0.9910 21 6 3.3227 -7.7945 0.4299 22 6 3.0634 -6.5774 1.2924 23 6 3.7081 -5.3142 0.7581 24 1 4.6922 -5.1830 1.2081 25 6 2.8100 -4.1383 1.1266 26 8 2.5633 -3.7648 2.2533 27 1 -0.3633 -0.0936 -1.0235 28 1 -0.3633 -0.8396 0.5927 29 1 -0.3634 0.9330 0.4307 30 1 1.6548 4.2797 -0.7656 31 1 0.7584 -2.5299 0.8904 32 1 0.7591 -2.5302 -0.8896 33 1 3.3373 -6.1545 -2.5697 34 1 4.7244 -6.8420 -1.7116 35 1 1.7924 -7.1454 -0.9539 36 1 2.8749 -8.4099 -1.5953 37 1 2.7962 -8.6575 0.8375 38 1 4.3944 -7.9921 0.4089 39 1 3.4282 -6.7574 2.3037 40 1 1.9839 -6.4314 1.3316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263687601.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:29 Heat of formation + Delta-G solvation = -115.717928 kcal Electronic energy + Delta-G solvation = -24729.105889 eV Core-core repulsion = 21122.361538 eV Total energy + Delta-G solvation = -3606.744351 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.43403 -40.60861 -39.81114 -38.54289 -37.08286 -36.58103 -34.29820 -33.12135 -32.33997 -29.77574 -28.21486 -26.57625 -26.20173 -24.02656 -23.44677 -21.74419 -20.67559 -19.96465 -19.24482 -18.71798 -18.03846 -17.73714 -17.50815 -17.11563 -16.49591 -16.27467 -15.86224 -15.71960 -15.40798 -15.35937 -14.64784 -14.50647 -14.43383 -14.19672 -14.08805 -13.85316 -13.63674 -13.53357 -13.26591 -12.94553 -12.61607 -12.45849 -12.36169 -11.90957 -11.72191 -11.65521 -11.50394 -11.18641 -11.14385 -11.09182 -10.92797 -10.41753 -9.92367 -8.59712 -6.23032 0.41228 1.16453 1.25527 1.27742 1.41021 1.62748 1.69352 2.12187 2.58583 2.87312 2.92096 3.01377 3.33968 3.60923 3.69339 3.89039 4.00931 4.04610 4.11775 4.22030 4.25247 4.29682 4.36665 4.42077 4.50099 4.55508 4.71119 4.81214 4.98123 5.04407 5.14595 5.25219 5.34920 5.39088 5.39529 5.54154 5.69358 5.89699 6.20710 6.36393 6.63485 6.77736 7.13807 7.63747 8.57576 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.030103 B = 0.004379 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.932008 B = 6392.917895 C = 6730.903315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.474 5.474 3 C -0.343 4.343 4 H 0.044 0.956 5 C 0.015 3.985 6 N -0.908 5.908 7 Si 0.953 3.047 8 H -0.224 1.224 9 H -0.286 1.286 10 H -0.272 1.272 11 C 0.438 3.562 12 O -0.612 6.612 13 C 0.088 3.912 14 N -0.565 5.565 15 C 0.529 3.471 16 O -0.511 6.511 17 C -0.106 4.106 18 H 0.121 0.879 19 C -0.098 4.098 20 C -0.121 4.121 21 C -0.109 4.109 22 C -0.101 4.101 23 C -0.087 4.087 24 H 0.141 0.859 25 C 0.523 3.477 26 O -0.513 6.513 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.283 0.717 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.321 -25.791 -0.873 26.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.195 5.195 3 C -0.470 4.470 4 H 0.062 0.938 5 C -0.188 4.188 6 N -0.545 5.545 7 Si 0.775 3.225 8 H -0.147 1.147 9 H -0.212 1.212 10 H -0.197 1.197 11 C 0.226 3.774 12 O -0.498 6.498 13 C -0.037 4.037 14 N -0.306 5.306 15 C 0.321 3.679 16 O -0.385 6.385 17 C -0.127 4.127 18 H 0.138 0.862 19 C -0.136 4.136 20 C -0.158 4.158 21 C -0.146 4.146 22 C -0.139 4.139 23 C -0.108 4.108 24 H 0.158 0.842 25 C 0.314 3.686 26 O -0.386 6.386 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.079 -25.152 -0.869 25.354 hybrid contribution -0.168 1.546 -0.429 1.613 sum -3.247 -23.605 -1.298 23.863 Atomic orbital electron populations 1.22410 0.79504 1.05319 1.02366 1.43783 1.06400 1.04434 1.64892 1.18709 1.05937 0.86653 1.35734 0.93799 1.26143 1.00661 0.93568 0.98398 1.69849 1.45065 0.98918 1.40674 0.85888 0.80135 0.77705 0.78770 1.14681 1.21210 1.19676 1.21248 0.88348 0.86447 0.81328 1.90513 1.16136 1.87735 1.55367 1.21627 0.91534 0.82929 1.07596 1.46729 1.42283 1.31067 1.10562 1.21534 0.80629 0.82673 0.83069 1.90715 1.60364 1.65707 1.21671 1.20653 0.99431 0.97128 0.95496 0.86164 1.20609 1.03573 0.91922 0.97463 1.21612 0.98292 0.98746 0.97174 1.21326 1.03242 0.96138 0.93942 1.20847 1.00183 0.91811 1.01011 1.21431 1.01207 0.93670 0.94532 0.84165 1.22046 0.79487 0.84069 0.82987 1.90724 1.59487 1.66132 1.22257 0.92003 0.87509 0.90150 0.90704 0.84649 0.84957 0.91436 0.87613 0.93140 0.88895 0.89421 0.89561 0.88986 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.71 7.83 127.77 1.00 2.71 16 2 N -0.47 -24.06 2.69 -658.88 -1.77 -25.83 16 3 C -0.34 -21.01 9.46 84.04 0.79 -20.21 16 4 H 0.04 3.17 7.80 -2.91 -0.02 3.14 16 5 C 0.02 0.86 5.19 84.93 0.44 1.30 16 6 N -0.91 -54.98 13.96 21.66 0.30 -54.68 16 7 Si 0.95 42.28 24.22 68.60 1.66 43.94 16 8 H -0.22 -8.23 6.69 99.48 0.67 -7.56 16 9 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 10 H -0.27 -12.20 7.02 99.48 0.70 -11.50 16 11 C 0.44 21.83 7.70 87.66 0.67 22.50 16 12 O -0.61 -36.29 16.24 -3.07 -0.05 -36.34 16 13 C 0.09 3.18 4.68 85.63 0.40 3.58 16 14 N -0.57 -19.15 2.06 -759.14 -1.56 -20.72 16 15 C 0.53 16.77 7.61 87.72 0.67 17.44 16 16 O -0.51 -19.28 16.95 -2.87 -0.05 -19.33 16 17 C -0.11 -2.19 2.62 -13.26 -0.03 -2.22 16 18 H 0.12 2.36 8.06 -2.39 -0.02 2.34 16 19 C -0.10 -1.38 5.36 29.30 0.16 -1.23 16 20 C -0.12 -1.30 6.07 30.59 0.19 -1.11 16 21 C -0.11 -0.93 5.92 30.23 0.18 -0.75 16 22 C -0.10 -1.39 5.27 29.60 0.16 -1.24 16 23 C -0.09 -1.72 3.30 -12.02 -0.04 -1.76 16 24 H 0.14 2.28 8.14 -2.39 -0.02 2.26 16 25 C 0.52 16.33 7.02 88.35 0.62 16.95 16 26 O -0.51 -19.28 17.53 -2.87 -0.05 -19.33 16 27 H 0.06 2.10 5.74 -2.38 -0.01 2.08 16 28 H 0.11 2.94 6.66 -2.39 -0.02 2.93 16 29 H 0.08 3.04 6.62 -2.39 -0.02 3.02 16 30 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.14 4.11 7.15 -2.38 -0.02 4.10 16 32 H 0.13 4.16 7.79 -2.39 -0.02 4.15 16 33 H 0.07 1.19 7.44 -2.39 -0.02 1.18 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 0.69 8.12 -2.39 -0.02 0.67 16 36 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.09 0.50 8.10 -2.39 -0.02 0.48 16 39 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.05 0.85 7.68 -2.39 -0.02 0.83 16 Total: -1.00 -86.74 322.66 4.69 -82.06 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 1.01 Total: 14.26 kcal Atomic # 6 Polarization: 30.77 SS G_CDS: 5.20 Total: 35.98 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -3.03 Total: -101.23 kcal Atomic # 8 Polarization: -74.86 SS G_CDS: -0.15 Total: -75.00 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.66 Total: 43.94 kcal Total: -86.74 4.69 -82.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263687601.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.663 kcal (2) G-P(sol) polarization free energy of solvation -86.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds