Wall clock time and date at job start Fri Apr 10 2020 17:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37100 * 120.00251 * 2 1 4 4 H 1.08001 * 120.00106 * 204.39225 * 3 2 1 5 5 C 1.38949 * 119.99780 * 24.39425 * 3 2 1 6 6 N 1.31413 * 120.00206 * 12.65964 * 5 3 2 7 7 Si 1.86802 * 119.99959 * 192.66104 * 5 3 2 8 8 H 1.48503 * 109.47107 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47280 * 119.99862 * 7 5 3 10 10 H 1.48500 * 109.47098 * 239.99943 * 7 5 3 11 11 C 1.34778 * 119.99687 * 179.97438 * 2 1 3 12 12 O 1.21292 * 119.99662 * 180.02562 * 11 2 1 13 13 C 1.50695 * 120.00280 * 0.02562 * 11 2 1 14 14 N 1.46503 * 109.47444 * 179.97438 * 13 11 2 15 15 C 1.36053 * 123.28378 * 269.96318 * 14 13 11 16 16 O 1.21227 * 127.00847 * 347.35226 * 15 14 13 17 17 C 1.49540 * 105.98345 * 167.37460 * 15 14 13 18 18 H 1.08996 * 110.10248 * 275.24868 * 17 15 14 19 19 C 1.51033 * 119.72038 * 146.55785 * 17 15 14 20 20 C 1.53993 * 106.70942 * 182.24494 * 19 17 15 21 21 C 1.52475 * 112.11523 * 56.35246 * 20 19 17 22 22 C 1.54188 * 111.87498 * 306.95059 * 21 20 19 23 23 C 1.51316 * 106.18443 * 57.50630 * 22 21 20 24 24 H 1.09005 * 109.93873 * 52.35499 * 23 22 21 25 25 C 1.36051 * 123.28131 * 89.99621 * 14 13 11 26 26 O 1.21216 * 127.00070 * 347.24354 * 25 14 13 27 27 H 1.09002 * 109.47140 * 265.86899 * 1 2 3 28 28 H 1.08999 * 109.46958 * 25.86478 * 1 2 3 29 29 H 1.08997 * 109.47109 * 145.86411 * 1 2 3 30 30 H 0.96999 * 119.99877 * 179.97438 * 6 5 3 31 31 H 1.09004 * 109.47087 * 59.99945 * 13 11 2 32 32 H 1.09005 * 109.47192 * 299.99850 * 13 11 2 33 33 H 1.09001 * 110.00339 * 301.54549 * 19 17 15 34 34 H 1.08998 * 110.00347 * 62.94989 * 19 17 15 35 35 H 1.08997 * 108.95525 * 295.67142 * 20 19 17 36 36 H 1.09005 * 108.87909 * 176.97613 * 20 19 17 37 37 H 1.08999 * 108.99802 * 186.33441 * 21 20 19 38 38 H 1.08997 * 109.00475 * 67.57301 * 21 20 19 39 39 H 1.09004 * 110.10881 * 298.34205 * 22 21 20 40 40 H 1.08997 * 110.10592 * 176.67445 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1583 1.2290 -0.3863 5 6 1.5489 2.3369 0.4970 6 7 0.4348 2.2491 1.1885 7 14 2.3235 4.0073 0.1822 8 1 3.5644 3.8352 -0.6152 9 1 1.3682 4.8629 -0.5665 10 1 2.6542 4.6518 1.4786 11 6 2.1388 -1.1673 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 7 2.3373 -3.5859 0.0005 15 6 2.8219 -4.1539 -1.1368 16 8 2.4074 -3.9963 -2.2651 17 6 3.9698 -5.0127 -0.7114 18 1 4.8782 -4.4148 -0.6387 19 6 4.2592 -6.2967 -1.4522 20 6 5.4506 -6.9612 -0.7378 21 6 5.1760 -7.1905 0.7443 22 6 4.7228 -5.8974 1.4514 23 6 3.4904 -5.4226 0.7129 24 1 2.7639 -6.2323 0.6431 25 6 2.8225 -4.1533 1.1379 26 8 2.7323 -3.7187 2.2658 27 1 -0.3633 -0.0740 1.0250 28 1 -0.3633 0.9247 -0.4483 29 1 -0.3633 -0.8506 -0.5767 30 1 0.0150 3.0516 1.5357 31 1 0.7590 -2.5302 -0.8897 32 1 0.7583 -2.5299 0.8903 33 1 3.3893 -6.9526 -1.4153 34 1 4.5197 -6.0790 -2.4879 35 1 6.3268 -6.3210 -0.8406 36 1 5.6559 -7.9208 -1.2124 37 1 6.0854 -7.5558 1.2214 38 1 4.3954 -7.9441 0.8482 39 1 5.5079 -5.1436 1.3933 40 1 4.4783 -6.1059 2.4930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263687603.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:32 Heat of formation + Delta-G solvation = -90.116645 kcal Electronic energy + Delta-G solvation = -24518.012505 eV Core-core repulsion = 20912.378309 eV Total energy + Delta-G solvation = -3605.634196 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.02507 -38.57542 -38.29149 -37.58119 -35.42604 -34.60081 -32.01652 -31.43040 -31.17686 -27.93778 -26.15705 -25.16823 -24.41194 -22.88141 -21.87832 -20.45951 -19.77945 -18.69193 -17.20431 -16.93972 -16.67572 -16.34378 -15.45970 -15.33050 -14.78149 -14.69293 -14.63642 -14.21245 -13.96658 -13.77020 -13.64229 -13.41088 -12.99771 -12.52307 -12.39088 -12.26451 -11.58573 -11.54279 -11.48359 -11.32388 -11.31380 -11.27973 -10.96931 -10.90062 -10.73714 -10.33542 -10.30893 -9.94017 -9.80926 -9.61096 -9.04629 -8.36305 -7.70774 -6.35102 -3.91593 1.76578 2.59294 2.86339 3.14069 3.24956 3.32255 3.72525 3.81657 4.12459 4.24139 4.27506 4.67476 4.79935 4.83122 4.89751 4.94687 5.04708 5.07190 5.09427 5.20918 5.47564 5.52469 5.57511 5.61733 5.70942 5.75321 5.78425 5.83972 5.86669 5.90409 5.98364 6.11512 6.27527 6.79180 7.00793 7.14711 7.51504 7.54705 7.96932 8.11397 8.44120 9.13742 9.35870 9.89686 10.69836 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028345 B = 0.003957 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.596034 B = 7074.002810 C = 7143.503763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.440 5.440 3 C -0.306 4.306 4 H 0.098 0.902 5 C 0.031 3.969 6 N -0.880 5.880 7 Si 0.927 3.073 8 H -0.268 1.268 9 H -0.280 1.280 10 H -0.281 1.281 11 C 0.433 3.567 12 O -0.582 6.582 13 C 0.089 3.911 14 N -0.569 5.569 15 C 0.552 3.448 16 O -0.477 6.477 17 C -0.131 4.131 18 H 0.125 0.875 19 C -0.096 4.096 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.098 4.098 23 C -0.130 4.130 24 H 0.120 0.880 25 C 0.545 3.455 26 O -0.464 6.464 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.026 0.974 30 H 0.268 0.732 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.466 -18.354 -2.176 18.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.159 5.159 3 C -0.434 4.434 4 H 0.116 0.884 5 C -0.172 4.172 6 N -0.519 5.519 7 Si 0.754 3.246 8 H -0.192 1.192 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.220 3.780 12 O -0.467 6.467 13 C -0.036 4.036 14 N -0.314 5.314 15 C 0.341 3.659 16 O -0.347 6.347 17 C -0.153 4.153 18 H 0.143 0.857 19 C -0.134 4.134 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.136 4.136 23 C -0.151 4.151 24 H 0.138 0.862 25 C 0.333 3.667 26 O -0.333 6.333 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.611 -17.841 -2.075 18.321 hybrid contribution -0.045 1.199 0.015 1.200 sum 3.565 -16.642 -2.060 17.144 Atomic orbital electron populations 1.21555 0.81063 1.00218 1.00810 1.43537 1.05543 1.04550 1.62240 1.19688 1.00691 0.83880 1.39092 0.88384 1.25366 0.96615 1.00210 0.95000 1.69998 1.19185 1.29650 1.33074 0.85843 0.79206 0.81290 0.78257 1.19206 1.20565 1.20666 1.20112 0.88393 0.84856 0.84680 1.90513 1.13664 1.86774 1.55746 1.21588 0.91258 0.85730 1.04977 1.47473 1.42974 1.32197 1.08712 1.20419 0.82838 0.79137 0.83492 1.90717 1.62525 1.61554 1.19947 1.22107 0.98905 0.98307 0.95942 0.85749 1.21184 0.99141 0.93475 0.99554 1.21604 0.98012 1.01034 0.95121 1.21632 1.01766 0.97021 0.95157 1.21311 0.95037 0.97820 0.99448 1.22140 0.99926 0.96640 0.96414 0.86185 1.20497 0.77103 0.85370 0.83726 1.90753 1.54237 1.67943 1.20350 0.92659 0.90320 0.95577 0.92194 0.87605 0.87667 0.90910 0.90190 0.91569 0.91315 0.91277 0.91747 0.90526 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.41 8.44 59.85 0.51 2.92 16 2 N -0.44 -11.62 3.01 -122.19 -0.37 -11.99 16 3 C -0.31 -8.75 9.24 -14.93 -0.14 -8.89 16 4 H 0.10 2.95 7.45 -52.49 -0.39 2.56 16 5 C 0.03 0.85 5.04 -17.47 -0.09 0.76 16 6 N -0.88 -23.78 10.83 55.50 0.60 -23.17 16 7 Si 0.93 21.10 29.57 -169.99 -5.03 16.07 16 8 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 C 0.43 11.03 7.70 -10.99 -0.08 10.95 16 12 O -0.58 -16.74 16.14 5.55 0.09 -16.65 16 13 C 0.09 1.76 4.82 -5.19 -0.03 1.73 16 14 N -0.57 -10.22 2.16 -116.81 -0.25 -10.47 16 15 C 0.55 9.14 7.75 -10.96 -0.08 9.05 16 16 O -0.48 -9.02 17.68 5.60 0.10 -8.93 16 17 C -0.13 -1.60 2.38 -91.84 -0.22 -1.81 16 18 H 0.12 1.57 7.79 -51.93 -0.40 1.17 16 19 C -0.10 -0.84 5.83 -27.20 -0.16 -0.99 16 20 C -0.12 -0.83 5.80 -26.48 -0.15 -0.98 16 21 C -0.12 -0.80 5.80 -26.38 -0.15 -0.95 16 22 C -0.10 -0.92 5.86 -26.96 -0.16 -1.08 16 23 C -0.13 -1.48 2.42 -91.67 -0.22 -1.70 16 24 H 0.12 1.08 7.81 -51.93 -0.41 0.67 16 25 C 0.54 9.15 7.72 -10.94 -0.08 9.06 16 26 O -0.46 -9.40 17.83 5.61 0.10 -9.30 16 27 H 0.05 1.27 7.83 -51.93 -0.41 0.86 16 28 H 0.08 1.86 6.80 -51.93 -0.35 1.50 16 29 H 0.03 0.48 6.61 -51.93 -0.34 0.13 16 30 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.11 1.87 7.16 -51.93 -0.37 1.50 16 32 H 0.11 1.92 8.04 -51.93 -0.42 1.50 16 33 H 0.07 0.57 7.93 -51.93 -0.41 0.15 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.78 7.89 -51.93 -0.41 0.37 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 329.82 15.07 4.97 4.97 Total: -1.00 -34.96 329.82 -6.44 -41.39 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.59 Total: 0.01 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: -1.06 Total: 18.06 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.02 Total: -45.63 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: 0.29 Total: -34.87 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.96 -6.44 -41.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263687603.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.724 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds