Wall clock time and date at job start Fri Apr 10 2020 17:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37100 * 120.00251 * 2 1 4 4 H 1.08001 * 120.00106 * 204.39225 * 3 2 1 5 5 C 1.38949 * 119.99780 * 24.39425 * 3 2 1 6 6 N 1.31413 * 120.00206 * 12.65964 * 5 3 2 7 7 Si 1.86802 * 119.99959 * 192.66104 * 5 3 2 8 8 H 1.48503 * 109.47107 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47280 * 119.99862 * 7 5 3 10 10 H 1.48500 * 109.47098 * 239.99943 * 7 5 3 11 11 C 1.34778 * 119.99687 * 179.97438 * 2 1 3 12 12 O 1.21292 * 119.99662 * 180.02562 * 11 2 1 13 13 C 1.50695 * 120.00280 * 0.02562 * 11 2 1 14 14 N 1.46503 * 109.47444 * 179.97438 * 13 11 2 15 15 C 1.36053 * 123.28378 * 269.96318 * 14 13 11 16 16 O 1.21227 * 127.00847 * 347.35226 * 15 14 13 17 17 C 1.49540 * 105.98345 * 167.37460 * 15 14 13 18 18 H 1.08996 * 110.10248 * 275.24868 * 17 15 14 19 19 C 1.51033 * 119.72038 * 146.55785 * 17 15 14 20 20 C 1.53993 * 106.70942 * 182.24494 * 19 17 15 21 21 C 1.52475 * 112.11523 * 56.35246 * 20 19 17 22 22 C 1.54188 * 111.87498 * 306.95059 * 21 20 19 23 23 C 1.51316 * 106.18443 * 57.50630 * 22 21 20 24 24 H 1.09005 * 109.93873 * 52.35499 * 23 22 21 25 25 C 1.36051 * 123.28131 * 89.99621 * 14 13 11 26 26 O 1.21216 * 127.00070 * 347.24354 * 25 14 13 27 27 H 1.09002 * 109.47140 * 265.86899 * 1 2 3 28 28 H 1.08999 * 109.46958 * 25.86478 * 1 2 3 29 29 H 1.08997 * 109.47109 * 145.86411 * 1 2 3 30 30 H 0.96999 * 119.99877 * 179.97438 * 6 5 3 31 31 H 1.09004 * 109.47087 * 59.99945 * 13 11 2 32 32 H 1.09005 * 109.47192 * 299.99850 * 13 11 2 33 33 H 1.09001 * 110.00339 * 301.54549 * 19 17 15 34 34 H 1.08998 * 110.00347 * 62.94989 * 19 17 15 35 35 H 1.08997 * 108.95525 * 295.67142 * 20 19 17 36 36 H 1.09005 * 108.87909 * 176.97613 * 20 19 17 37 37 H 1.08999 * 108.99802 * 186.33441 * 21 20 19 38 38 H 1.08997 * 109.00475 * 67.57301 * 21 20 19 39 39 H 1.09004 * 110.10881 * 298.34205 * 22 21 20 40 40 H 1.08997 * 110.10592 * 176.67445 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1583 1.2290 -0.3863 5 6 1.5489 2.3369 0.4970 6 7 0.4348 2.2491 1.1885 7 14 2.3235 4.0073 0.1822 8 1 3.5644 3.8352 -0.6152 9 1 1.3682 4.8629 -0.5665 10 1 2.6542 4.6518 1.4786 11 6 2.1388 -1.1673 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 7 2.3373 -3.5859 0.0005 15 6 2.8219 -4.1539 -1.1368 16 8 2.4074 -3.9963 -2.2651 17 6 3.9698 -5.0127 -0.7114 18 1 4.8782 -4.4148 -0.6387 19 6 4.2592 -6.2967 -1.4522 20 6 5.4506 -6.9612 -0.7378 21 6 5.1760 -7.1905 0.7443 22 6 4.7228 -5.8974 1.4514 23 6 3.4904 -5.4226 0.7129 24 1 2.7639 -6.2323 0.6431 25 6 2.8225 -4.1533 1.1379 26 8 2.7323 -3.7187 2.2658 27 1 -0.3633 -0.0740 1.0250 28 1 -0.3633 0.9247 -0.4483 29 1 -0.3633 -0.8506 -0.5767 30 1 0.0150 3.0516 1.5357 31 1 0.7590 -2.5302 -0.8897 32 1 0.7583 -2.5299 0.8903 33 1 3.3893 -6.9526 -1.4153 34 1 4.5197 -6.0790 -2.4879 35 1 6.3268 -6.3210 -0.8406 36 1 5.6559 -7.9208 -1.2124 37 1 6.0854 -7.5558 1.2214 38 1 4.3954 -7.9441 0.8482 39 1 5.5079 -5.1436 1.3933 40 1 4.4783 -6.1059 2.4930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263687603.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:31 Heat of formation + Delta-G solvation = -113.599419 kcal Electronic energy + Delta-G solvation = -24519.030794 eV Core-core repulsion = 20912.378309 eV Total energy + Delta-G solvation = -3606.652485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.25522 -40.40790 -39.69274 -38.66749 -37.00647 -36.48172 -33.86770 -32.76323 -31.93843 -29.43560 -28.01167 -26.29828 -26.28790 -23.93980 -22.91375 -21.41272 -21.15021 -20.15331 -19.05265 -18.48291 -18.22448 -17.89897 -16.97371 -16.56561 -16.42930 -16.09112 -15.95622 -15.87451 -15.53816 -14.83235 -14.72617 -14.35794 -14.27694 -14.06225 -13.84914 -13.46226 -13.27186 -13.20016 -13.17258 -12.71443 -12.46785 -12.42970 -12.24674 -12.16210 -12.05960 -11.84057 -11.40555 -11.36168 -11.09086 -10.89852 -10.87414 -10.29642 -9.78229 -8.42542 -6.08940 0.44683 1.22799 1.30656 1.37397 1.51664 1.58219 1.83938 2.23016 2.75127 2.95449 2.99823 3.24141 3.29133 3.79063 3.88858 3.97116 4.05675 4.09260 4.13326 4.18504 4.33918 4.35760 4.44609 4.47992 4.55904 4.82714 4.87714 4.92745 5.11676 5.17977 5.23384 5.26847 5.33698 5.36555 5.38774 5.55499 5.66496 5.98421 6.20864 6.35483 6.66365 7.04842 7.31449 7.85552 8.60843 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028345 B = 0.003957 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.596034 B = 7074.002810 C = 7143.503763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.455 5.455 3 C -0.348 4.348 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.892 5.892 7 Si 0.993 3.007 8 H -0.275 1.275 9 H -0.260 1.260 10 H -0.274 1.274 11 C 0.418 3.582 12 O -0.628 6.628 13 C 0.098 3.902 14 N -0.580 5.580 15 C 0.545 3.455 16 O -0.505 6.505 17 C -0.123 4.123 18 H 0.116 0.884 19 C -0.091 4.091 20 C -0.116 4.116 21 C -0.110 4.110 22 C -0.100 4.100 23 C -0.114 4.114 24 H 0.156 0.844 25 C 0.536 3.464 26 O -0.508 6.508 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.276 0.724 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.387 -20.321 -2.439 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.173 5.173 3 C -0.476 4.476 4 H 0.086 0.914 5 C -0.202 4.202 6 N -0.530 5.530 7 Si 0.816 3.184 8 H -0.200 1.200 9 H -0.185 1.185 10 H -0.199 1.199 11 C 0.207 3.793 12 O -0.515 6.515 13 C -0.028 4.028 14 N -0.324 5.324 15 C 0.337 3.663 16 O -0.377 6.377 17 C -0.144 4.144 18 H 0.134 0.866 19 C -0.129 4.129 20 C -0.154 4.154 21 C -0.148 4.148 22 C -0.138 4.138 23 C -0.135 4.135 24 H 0.173 0.827 25 C 0.328 3.672 26 O -0.380 6.380 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.145 0.855 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.500 -19.834 -2.342 20.276 hybrid contribution -0.045 1.855 0.118 1.860 sum 3.456 -17.979 -2.224 18.442 Atomic orbital electron populations 1.21552 0.78938 1.01353 1.00965 1.43827 1.07013 1.04440 1.62049 1.19626 1.00492 0.85934 1.41578 0.91355 1.26142 0.96982 1.03069 0.93981 1.70057 1.19544 1.31025 1.32402 0.84901 0.78365 0.76861 0.78317 1.19974 1.18485 1.19941 1.21105 0.88357 0.86518 0.83353 1.90461 1.15799 1.87790 1.57476 1.21443 0.91306 0.83477 1.06560 1.47798 1.43017 1.31626 1.09979 1.21222 0.83329 0.79072 0.82685 1.90690 1.63500 1.62677 1.20848 1.22169 0.96339 0.99099 0.96760 0.86634 1.21277 1.00778 0.91690 0.99156 1.21609 0.96744 1.01849 0.95185 1.21612 1.03061 0.95507 0.94601 1.21404 0.93493 0.98953 0.99919 1.22272 1.01130 0.94578 0.95512 0.82650 1.21527 0.76270 0.86683 0.82767 1.90720 1.55938 1.69403 1.21920 0.93377 0.91751 0.91275 0.91392 0.85472 0.86289 0.89115 0.90437 0.92036 0.88954 0.89794 0.89835 0.92002 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.18 8.44 127.77 1.08 6.26 16 2 N -0.45 -24.74 3.01 -658.89 -1.98 -26.73 16 3 C -0.35 -20.71 9.24 84.04 0.78 -19.93 16 4 H 0.07 4.36 7.45 -2.91 -0.02 4.34 16 5 C 0.00 0.04 5.04 84.93 0.43 0.47 16 6 N -0.89 -48.28 10.83 21.66 0.23 -48.05 16 7 Si 0.99 43.56 29.57 68.60 2.03 45.59 16 8 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 9 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 C 0.42 22.04 7.70 87.66 0.67 22.71 16 12 O -0.63 -37.86 16.14 -3.07 -0.05 -37.91 16 13 C 0.10 3.86 4.82 85.63 0.41 4.27 16 14 N -0.58 -20.89 2.16 -758.83 -1.64 -22.53 16 15 C 0.55 17.88 7.75 87.09 0.67 18.56 16 16 O -0.50 -19.03 17.68 -2.86 -0.05 -19.08 16 17 C -0.12 -2.83 2.38 -11.58 -0.03 -2.85 16 18 H 0.12 2.92 7.79 -2.39 -0.02 2.90 16 19 C -0.09 -1.33 5.83 30.29 0.18 -1.15 16 20 C -0.12 -1.18 5.80 30.76 0.18 -1.00 16 21 C -0.11 -1.06 5.80 30.82 0.18 -0.88 16 22 C -0.10 -1.66 5.86 30.45 0.18 -1.48 16 23 C -0.11 -2.40 2.42 -11.48 -0.03 -2.43 16 24 H 0.16 2.21 7.81 -2.38 -0.02 2.19 16 25 C 0.54 18.00 7.72 87.11 0.67 18.67 16 26 O -0.51 -21.06 17.83 -2.83 -0.05 -21.11 16 27 H 0.05 2.21 7.83 -2.39 -0.02 2.19 16 28 H 0.06 3.06 6.80 -2.39 -0.02 3.04 16 29 H 0.07 2.47 6.61 -2.39 -0.02 2.45 16 30 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 31 H 0.13 4.41 7.16 -2.38 -0.02 4.40 16 32 H 0.12 4.33 8.04 -2.38 -0.02 4.31 16 33 H 0.09 1.04 7.93 -2.39 -0.02 1.02 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.06 1.21 7.89 -2.39 -0.02 1.19 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -79.91 329.82 4.91 -74.99 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 1.05 Total: 13.60 kcal Atomic # 6 Polarization: 35.85 SS G_CDS: 5.37 Total: 41.22 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -3.39 Total: -97.30 kcal Atomic # 8 Polarization: -77.95 SS G_CDS: -0.15 Total: -78.10 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -79.91 4.91 -74.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263687603.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.607 kcal (2) G-P(sol) polarization free energy of solvation -79.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds