Wall clock time and date at job start Fri Apr 10 2020 17:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37105 * 119.99633 * 2 1 4 4 H 1.07998 * 119.99603 * 151.17049 * 3 2 1 5 5 C 1.38947 * 119.99798 * 331.16361 * 3 2 1 6 6 N 1.31410 * 120.00314 * 331.78280 * 5 3 2 7 7 Si 1.86804 * 119.99801 * 151.78678 * 5 3 2 8 8 H 1.48506 * 109.46864 * 270.00298 * 7 5 3 9 9 H 1.48493 * 109.47426 * 150.00169 * 7 5 3 10 10 H 1.48498 * 109.47014 * 29.99524 * 7 5 3 11 11 C 1.34776 * 120.00124 * 179.97438 * 2 1 3 12 12 O 1.21294 * 119.99702 * 179.97438 * 11 2 1 13 13 C 1.50696 * 120.00302 * 0.02562 * 11 2 1 14 14 N 1.46495 * 109.47332 * 179.97438 * 13 11 2 15 15 C 1.36044 * 123.28679 * 269.70639 * 14 13 11 16 16 O 1.21225 * 126.99258 * 12.66767 * 15 14 13 17 17 C 1.49478 * 106.07433 * 192.56009 * 15 14 13 18 18 H 1.08995 * 110.35902 * 85.36582 * 17 15 14 19 19 C 1.51330 * 119.52240 * 214.29022 * 17 15 14 20 20 C 1.54191 * 106.18638 * 178.50239 * 19 17 15 21 21 C 1.52471 * 111.88949 * 302.48621 * 20 19 17 22 22 C 1.53993 * 112.10187 * 53.04836 * 21 20 19 23 23 C 1.51017 * 106.71321 * 303.65731 * 22 21 20 24 24 H 1.09001 * 109.82822 * 306.24417 * 23 22 21 25 25 C 1.36065 * 123.28110 * 89.99490 * 14 13 11 26 26 O 1.21223 * 127.01144 * 12.70262 * 25 14 13 27 27 H 1.09001 * 109.47246 * 94.71937 * 1 2 3 28 28 H 1.09005 * 109.46878 * 214.71251 * 1 2 3 29 29 H 1.08997 * 109.47162 * 334.71113 * 1 2 3 30 30 H 0.97001 * 119.99946 * 353.85754 * 6 5 3 31 31 H 1.09000 * 109.46773 * 299.99899 * 13 11 2 32 32 H 1.08995 * 109.47144 * 59.99336 * 13 11 2 33 33 H 1.08999 * 110.10218 * 59.33651 * 19 17 15 34 34 H 1.08998 * 110.10106 * 297.66997 * 19 17 15 35 35 H 1.08998 * 108.99301 * 181.86390 * 20 19 17 36 36 H 1.09000 * 108.99943 * 63.10943 * 20 19 17 37 37 H 1.09000 * 108.95652 * 292.37926 * 21 20 19 38 38 H 1.09001 * 108.95811 * 173.73024 * 21 20 19 39 39 H 1.09003 * 110.00548 * 184.35105 * 22 21 20 40 40 H 1.09005 * 110.00072 * 62.95709 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1300 1.2454 0.4510 5 6 1.5848 2.3161 -0.5804 6 7 0.7276 2.1875 -1.5680 7 14 2.0431 4.0162 0.0433 8 1 1.1116 4.4126 1.1297 9 1 1.9494 4.9939 -1.0704 10 1 3.4327 3.9935 0.5665 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1671 0.0001 13 6 1.3855 -2.4723 0.0005 14 7 2.3375 -3.5857 0.0005 15 6 2.8183 -4.1570 -1.1367 16 8 2.7223 -3.7269 -2.2660 17 6 3.4918 -5.4220 -0.7116 18 1 2.7666 -6.2327 -0.6417 19 6 4.7250 -5.8948 -1.4504 20 6 5.1809 -7.1867 -0.7428 21 6 5.4559 -6.9565 0.7391 22 6 4.2633 -6.2941 1.4536 23 6 3.9712 -5.0111 0.7125 24 1 4.8773 -4.4090 0.6442 25 6 2.8228 -4.1532 1.1380 26 8 2.4084 -3.9958 2.2663 27 1 -0.3634 -0.0846 -1.0242 28 1 -0.3633 -0.8448 0.5852 29 1 -0.3633 0.9292 0.4390 30 1 0.5568 1.3130 -1.9513 31 1 0.7586 -2.5298 0.8903 32 1 0.7592 -2.5302 -0.8896 33 1 5.5088 -5.1396 -1.3928 34 1 4.4806 -6.1042 -2.4917 35 1 6.0908 -7.5505 -1.2202 36 1 4.4016 -7.9418 -0.8460 37 1 6.3308 -6.3146 0.8414 38 1 5.6648 -7.9153 1.2136 39 1 4.5237 -6.0755 2.4892 40 1 3.3948 -6.9517 1.4172 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263687605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:34 Heat of formation + Delta-G solvation = -93.943616 kcal Electronic energy + Delta-G solvation = -24563.596903 eV Core-core repulsion = 20957.796758 eV Total energy + Delta-G solvation = -3605.800146 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.09288 -38.71462 -38.36201 -37.66197 -35.54004 -34.82201 -32.07874 -31.39567 -31.22018 -27.92210 -26.39310 -25.23378 -24.21248 -22.86475 -21.93743 -20.50352 -19.91100 -18.84691 -17.49274 -17.19601 -16.77450 -16.41389 -15.54633 -15.31465 -14.89546 -14.79868 -14.64090 -14.31139 -13.96643 -13.76154 -13.69822 -13.46257 -13.05383 -12.74084 -12.54548 -12.38049 -11.82642 -11.62387 -11.58258 -11.52086 -11.35504 -11.13898 -10.98194 -10.84432 -10.77538 -10.22082 -10.03262 -10.00374 -9.88217 -9.68529 -8.97304 -8.37872 -7.88436 -6.66126 -3.94941 1.69802 2.51916 2.79047 3.27707 3.35521 3.55163 3.66176 3.74822 4.17287 4.20666 4.23633 4.62075 4.67823 4.78321 4.82377 4.90333 4.99967 5.01946 5.04416 5.16802 5.37824 5.43461 5.46559 5.56764 5.57101 5.66008 5.74912 5.79649 5.82977 5.83255 5.94761 5.95973 6.07910 6.28088 6.54378 6.92585 7.44549 7.80883 7.95431 8.07176 8.57552 8.85555 9.34786 9.76786 10.59266 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.028815 B = 0.003987 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.485000 B = 7020.668910 C = 7156.669060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.447 5.447 3 C -0.404 4.404 4 H 0.089 0.911 5 C 0.011 3.989 6 N -0.872 5.872 7 Si 1.078 2.922 8 H -0.283 1.283 9 H -0.283 1.283 10 H -0.283 1.283 11 C 0.434 3.566 12 O -0.573 6.573 13 C 0.088 3.912 14 N -0.570 5.570 15 C 0.544 3.456 16 O -0.464 6.464 17 C -0.129 4.129 18 H 0.121 0.879 19 C -0.098 4.098 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.096 4.096 23 C -0.131 4.131 24 H 0.125 0.875 25 C 0.551 3.449 26 O -0.476 6.476 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.275 0.725 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 -18.810 3.030 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.168 5.168 3 C -0.531 4.531 4 H 0.107 0.893 5 C -0.197 4.197 6 N -0.506 5.506 7 Si 0.904 3.096 8 H -0.210 1.210 9 H -0.209 1.209 10 H -0.208 1.208 11 C 0.221 3.779 12 O -0.457 6.457 13 C -0.037 4.037 14 N -0.314 5.314 15 C 0.333 3.667 16 O -0.334 6.334 17 C -0.151 4.151 18 H 0.138 0.862 19 C -0.136 4.136 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.133 4.133 23 C -0.152 4.152 24 H 0.143 0.857 25 C 0.341 3.659 26 O -0.347 6.347 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.091 -16.827 2.834 17.342 hybrid contribution 0.023 -1.372 0.074 1.375 sum 3.115 -18.199 2.908 18.691 Atomic orbital electron populations 1.21748 0.82456 1.01766 1.00469 1.43581 1.04578 1.05139 1.63471 1.20382 1.05831 0.86085 1.40789 0.89308 1.26426 0.96001 1.03953 0.93348 1.70737 1.34277 1.27864 1.17692 0.83377 0.76377 0.73808 0.76080 1.20964 1.20862 1.20843 1.20205 0.88510 0.84763 0.84455 1.90521 1.13643 1.86635 1.54855 1.21607 0.91388 0.85876 1.04866 1.47468 1.43066 1.32083 1.08787 1.20493 0.77155 0.85335 0.83713 1.90756 1.54320 1.68047 1.20238 1.22109 0.99916 0.96625 0.96416 0.86158 1.21314 0.94962 0.97875 0.99453 1.21632 1.01797 0.96991 0.95153 1.21601 0.97975 1.01081 0.95116 1.21182 0.99161 0.93441 0.99560 1.22099 0.98838 0.98337 0.95948 0.85731 1.20452 0.82862 0.79137 0.83469 1.90718 1.62517 1.61507 1.19932 0.93404 0.93626 0.90635 0.91373 0.87630 0.87776 0.90514 0.90152 0.91224 0.91729 0.91560 0.91259 0.90162 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.71 8.47 59.85 0.51 2.21 16 2 N -0.45 -11.66 2.82 -122.19 -0.35 -12.01 16 3 C -0.40 -11.65 8.96 -14.93 -0.13 -11.78 16 4 H 0.09 2.75 7.65 -52.49 -0.40 2.34 16 5 C 0.01 0.29 4.65 -17.47 -0.08 0.21 16 6 N -0.87 -24.58 12.84 55.50 0.71 -23.87 16 7 Si 1.08 24.21 30.00 -169.99 -5.10 19.11 16 8 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 C 0.43 11.00 7.70 -10.99 -0.08 10.92 16 12 O -0.57 -16.61 16.19 5.55 0.09 -16.52 16 13 C 0.09 1.70 4.83 -5.20 -0.03 1.67 16 14 N -0.57 -10.15 2.16 -116.86 -0.25 -10.40 16 15 C 0.54 9.09 7.72 -11.00 -0.08 9.01 16 16 O -0.46 -9.37 17.83 5.60 0.10 -9.27 16 17 C -0.13 -1.47 2.41 -91.72 -0.22 -1.69 16 18 H 0.12 1.07 7.81 -51.93 -0.41 0.66 16 19 C -0.10 -0.91 5.87 -26.95 -0.16 -1.07 16 20 C -0.12 -0.79 5.79 -26.38 -0.15 -0.94 16 21 C -0.12 -0.82 5.81 -26.48 -0.15 -0.97 16 22 C -0.10 -0.83 5.84 -27.21 -0.16 -0.99 16 23 C -0.13 -1.58 2.37 -91.85 -0.22 -1.80 16 24 H 0.12 1.58 7.81 -51.93 -0.41 1.17 16 25 C 0.55 9.08 7.75 -10.96 -0.08 9.00 16 26 O -0.48 -8.97 17.68 5.61 0.10 -8.87 16 27 H 0.05 1.00 6.99 -51.93 -0.36 0.64 16 28 H 0.05 0.79 6.63 -51.93 -0.34 0.44 16 29 H 0.07 1.68 7.44 -51.93 -0.39 1.29 16 30 H 0.28 7.81 6.58 -40.82 -0.27 7.54 16 31 H 0.11 1.83 7.16 -51.93 -0.37 1.46 16 32 H 0.10 1.85 8.04 -51.93 -0.42 1.43 16 33 H 0.08 0.78 7.90 -51.93 -0.41 0.37 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.56 7.94 -51.93 -0.41 0.15 16 LS Contribution 329.80 15.07 4.97 4.97 Total: -1.00 -36.11 329.80 -6.29 -42.41 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.52 Total: 0.68 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: -1.05 Total: 13.77 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.11 Total: -46.28 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: 0.29 Total: -34.66 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.10 Total: 19.11 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.11 -6.29 -42.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263687605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.535 kcal (2) G-P(sol) polarization free energy of solvation -36.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds