Wall clock time and date at job start Fri Apr 10 2020 17:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34775 * 116.99447 * 2 1 4 4 O 1.21532 * 120.00556 * 359.97438 * 3 2 1 5 5 C 1.47235 * 119.99415 * 180.02562 * 3 2 1 6 6 C 1.36495 * 127.20558 * 359.95531 * 5 3 2 7 7 O 1.33618 * 108.38558 * 179.79369 * 6 5 3 8 8 C 1.34215 * 110.92528 * 0.41040 * 7 6 5 9 9 C 1.50702 * 125.42807 * 179.84844 * 8 7 6 10 10 N 1.46898 * 109.47413 * 269.69475 * 9 8 7 11 11 C 1.46903 * 111.00133 * 190.00079 * 10 9 8 12 12 C 1.53230 * 109.33899 * 187.25239 * 11 10 9 13 13 N 1.47080 * 108.52531 * 306.16795 * 12 11 10 14 14 C 1.36931 * 120.88364 * 231.18821 * 13 12 11 15 15 H 1.07994 * 120.00368 * 26.84029 * 14 13 12 16 16 C 1.38812 * 119.99721 * 206.56279 * 14 13 12 17 17 N 1.31619 * 120.00606 * 17.47328 * 16 14 13 18 18 Si 1.86807 * 119.99780 * 197.47555 * 16 14 13 19 19 H 1.48504 * 109.46947 * 94.38387 * 18 16 14 20 20 H 1.48508 * 109.46899 * 214.38152 * 18 16 14 21 21 H 1.48495 * 109.47303 * 334.38014 * 18 16 14 22 22 C 1.47082 * 118.23403 * 51.45931 * 13 12 11 23 23 C 1.46904 * 110.99940 * 314.30418 * 10 9 8 24 24 C 1.34151 * 109.14512 * 359.58460 * 8 7 6 25 25 H 1.08999 * 109.46866 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46815 * 299.99497 * 1 2 3 27 27 H 1.08993 * 109.46806 * 59.99952 * 1 2 3 28 28 H 1.08008 * 125.80580 * 0.07439 * 6 5 3 29 29 H 1.09004 * 109.47227 * 149.69139 * 9 8 7 30 30 H 1.09004 * 109.47144 * 29.69884 * 9 8 7 31 31 H 1.09001 * 109.49186 * 67.29185 * 11 10 9 32 32 H 1.08999 * 109.49207 * 307.21639 * 11 10 9 33 33 H 1.09004 * 109.63143 * 186.45915 * 12 11 10 34 34 H 1.09004 * 109.79153 * 65.97703 * 12 11 10 35 35 H 0.96993 * 120.00972 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.63087 * 68.24805 * 22 13 12 37 37 H 1.08996 * 109.63194 * 188.83501 * 22 13 12 38 38 H 1.09005 * 109.48966 * 292.70358 * 23 10 9 39 39 H 1.08993 * 109.49068 * 52.75434 * 23 10 9 40 40 H 1.08001 * 127.02724 * 180.27402 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4019 2.2202 -0.0005 5 6 3.5341 1.2780 -0.0006 6 6 4.4153 0.2355 -0.0003 7 8 5.6557 0.7321 -0.0056 8 6 5.6348 2.0741 -0.0004 9 6 6.8490 2.9667 -0.0008 10 7 7.2435 3.2575 1.3840 11 6 8.2698 4.3076 1.4296 12 6 8.7828 4.4537 2.8660 13 7 7.6306 4.6713 3.7539 14 6 7.6118 5.7173 4.6374 15 1 8.1793 6.6118 4.4275 16 6 6.8586 5.6301 5.8001 17 7 6.4470 4.4566 6.2313 18 14 6.4290 7.1784 6.7530 19 1 5.0916 7.6654 6.3292 20 1 6.4077 6.8751 8.2066 21 1 7.4462 8.2255 6.4807 22 6 6.5018 3.7321 3.6718 23 6 6.0759 3.6177 2.1994 24 6 4.3608 2.4943 -0.0007 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 4.1542 -0.8126 -0.0007 29 1 6.6146 3.8988 -0.5152 30 1 7.6689 2.4646 -0.5145 31 1 7.8382 5.2526 1.0996 32 1 9.0971 4.0364 0.7737 33 1 9.4592 5.3062 2.9284 34 1 9.3087 3.5467 3.1642 35 1 5.9210 4.3956 7.0440 36 1 6.8105 2.7551 4.0436 37 1 5.6692 4.1072 4.2669 38 1 5.6749 4.5723 1.8587 39 1 5.3120 2.8465 2.1014 40 1 4.0132 3.5168 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266758852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:40 Heat of formation + Delta-G solvation = -27.105466 kcal Electronic energy + Delta-G solvation = -23713.950248 eV Core-core repulsion = 20111.048422 eV Total energy + Delta-G solvation = -3602.901826 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.72729 -40.22537 -38.15214 -36.51603 -34.70389 -33.05147 -31.85772 -30.24409 -29.88287 -28.11534 -27.02151 -24.65729 -24.06247 -22.62218 -22.34769 -21.17262 -20.19219 -19.09517 -17.65823 -17.21882 -16.88010 -16.59279 -16.14449 -16.09246 -15.02114 -14.80946 -14.40176 -14.28363 -13.83196 -13.45153 -13.42283 -13.31364 -13.08179 -13.03174 -12.92360 -12.30605 -12.08625 -11.60863 -11.49658 -11.07887 -10.99953 -10.75524 -10.75011 -10.48528 -10.32122 -10.07437 -9.96142 -9.73864 -9.58886 -8.74058 -8.49447 -7.88205 -6.66950 -5.76836 -3.18235 1.06229 1.87164 2.44636 2.77343 2.97810 3.39356 3.46279 3.47533 4.34734 4.47545 4.49368 4.52440 4.87449 4.88858 4.97064 5.20586 5.26293 5.38734 5.40598 5.41804 5.45549 5.66473 5.81004 5.86805 5.91156 6.10361 6.15041 6.21134 6.22530 6.31510 6.52833 6.67963 6.90892 6.93699 7.22934 7.46701 7.62028 7.63601 7.69316 7.82068 8.44411 9.22051 9.85596 10.43884 11.31930 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.016469 B = 0.003985 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.706557 B = 7024.973021 C = 8235.102208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.539 3.461 4 O -0.504 6.504 5 C -0.232 4.232 6 C 0.055 3.945 7 O -0.159 6.159 8 C 0.013 3.987 9 C 0.127 3.873 10 N -0.529 5.529 11 C 0.045 3.955 12 C 0.149 3.851 13 N -0.596 5.596 14 C -0.253 4.253 15 H 0.067 0.933 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.180 3.820 23 C 0.028 3.972 24 C -0.155 4.155 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.220 0.780 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.032 0.968 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.027 0.973 35 H 0.254 0.746 36 H 0.026 0.974 37 H 0.089 0.911 38 H 0.027 0.973 39 H 0.065 0.935 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.821 -9.824 -15.628 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.384 3.616 4 O -0.392 6.392 5 C -0.234 4.234 6 C -0.016 4.016 7 O -0.053 6.053 8 C -0.036 4.036 9 C 0.000 4.000 10 N -0.255 5.255 11 C -0.084 4.084 12 C 0.022 3.978 13 N -0.319 5.319 14 C -0.383 4.383 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.547 5.547 18 Si 0.732 3.268 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.054 3.946 23 C -0.101 4.101 24 C -0.175 4.175 25 H 0.120 0.880 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.236 0.764 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.107 0.893 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.643 -10.110 -15.256 19.152 hybrid contribution -1.185 1.524 0.248 1.946 sum -6.828 -8.586 -15.008 18.590 Atomic orbital electron populations 1.23270 0.75824 1.03685 1.02758 1.86528 1.23706 1.32681 1.84803 1.20049 0.87595 0.81400 0.72566 1.90859 1.66505 1.35969 1.45903 1.20436 0.90216 0.94735 1.18035 1.24645 0.80461 0.99299 0.97232 1.83800 1.29928 1.21772 1.69805 1.22183 0.96545 0.80235 1.04665 1.20666 0.91779 0.94614 0.92955 1.62188 1.12505 1.43869 1.06917 1.22665 0.93788 0.91527 1.00435 1.20965 0.90477 0.98566 0.87799 1.44166 1.14185 1.31347 1.42209 1.19208 1.28058 0.92846 0.98149 0.91564 1.25022 1.02049 0.96388 0.96206 1.70028 1.40036 1.21640 1.23008 0.86279 0.78520 0.82918 0.79091 1.21508 1.21747 1.20404 1.20946 0.91918 0.92853 0.88908 1.23160 0.91252 0.97842 0.97832 1.22447 0.90478 0.98648 1.05930 0.87964 0.91680 0.91867 0.76388 0.91892 0.89102 0.95023 0.91665 0.92423 0.95558 0.93608 0.95567 0.89316 0.95447 0.91650 0.82254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.36 -4.03 10.42 -40.69 -0.42 -4.45 16 3 C 0.54 7.52 7.95 34.39 0.27 7.79 16 4 O -0.50 -8.46 16.77 -19.29 -0.32 -8.78 16 5 C -0.23 -3.12 6.31 -103.29 -0.65 -3.77 16 6 C 0.05 0.61 11.94 30.10 0.36 0.97 16 7 O -0.16 -2.09 10.52 7.74 0.08 -2.01 16 8 C 0.01 0.18 5.46 -35.75 -0.20 -0.02 16 9 C 0.13 1.74 5.79 -4.98 -0.03 1.71 16 10 N -0.53 -9.29 4.77 -235.47 -1.12 -10.41 16 11 C 0.04 0.77 5.58 -3.70 -0.02 0.75 16 12 C 0.15 3.13 6.69 -3.61 -0.02 3.11 16 13 N -0.60 -15.22 3.03 -171.74 -0.52 -15.74 16 14 C -0.25 -7.02 9.63 -15.06 -0.15 -7.17 16 15 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 16 C 0.00 0.05 4.93 -17.43 -0.09 -0.03 16 17 N -0.90 -26.60 11.16 55.49 0.62 -25.98 16 18 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.18 4.45 5.45 -3.36 -0.02 4.43 16 23 C 0.03 0.56 4.95 -3.46 -0.02 0.54 16 24 C -0.16 -2.23 9.18 -37.44 -0.34 -2.57 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.22 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 33 H 0.06 1.16 7.95 -51.93 -0.41 0.74 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 2.44 6.11 -51.93 -0.32 2.13 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.26 5.56 -51.93 -0.29 0.98 16 40 H 0.16 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 335.25 15.07 5.05 5.05 Total: -1.00 -33.15 335.25 -7.13 -40.29 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.64 Total: -2.00 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 0.17 Total: 7.12 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -1.02 Total: -52.14 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.67 Total: -15.24 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.15 -7.13 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266758852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.181 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds