Wall clock time and date at job start Fri Apr 10 2020 17:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34775 * 116.99447 * 2 1 4 4 O 1.21532 * 120.00556 * 359.97438 * 3 2 1 5 5 C 1.47235 * 119.99415 * 180.02562 * 3 2 1 6 6 C 1.36495 * 127.20558 * 359.95531 * 5 3 2 7 7 O 1.33618 * 108.38558 * 179.79369 * 6 5 3 8 8 C 1.34215 * 110.92528 * 0.41040 * 7 6 5 9 9 C 1.50702 * 125.42807 * 179.84844 * 8 7 6 10 10 N 1.46898 * 109.47413 * 269.69475 * 9 8 7 11 11 C 1.46903 * 111.00133 * 190.00079 * 10 9 8 12 12 C 1.53230 * 109.33899 * 187.25239 * 11 10 9 13 13 N 1.47080 * 108.52531 * 306.16795 * 12 11 10 14 14 C 1.36931 * 120.88364 * 231.18821 * 13 12 11 15 15 H 1.07994 * 120.00368 * 26.84029 * 14 13 12 16 16 C 1.38812 * 119.99721 * 206.56279 * 14 13 12 17 17 N 1.31619 * 120.00606 * 17.47328 * 16 14 13 18 18 Si 1.86807 * 119.99780 * 197.47555 * 16 14 13 19 19 H 1.48504 * 109.46947 * 94.38387 * 18 16 14 20 20 H 1.48508 * 109.46899 * 214.38152 * 18 16 14 21 21 H 1.48495 * 109.47303 * 334.38014 * 18 16 14 22 22 C 1.47082 * 118.23403 * 51.45931 * 13 12 11 23 23 C 1.46904 * 110.99940 * 314.30418 * 10 9 8 24 24 C 1.34151 * 109.14512 * 359.58460 * 8 7 6 25 25 H 1.08999 * 109.46866 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46815 * 299.99497 * 1 2 3 27 27 H 1.08993 * 109.46806 * 59.99952 * 1 2 3 28 28 H 1.08008 * 125.80580 * 0.07439 * 6 5 3 29 29 H 1.09004 * 109.47227 * 149.69139 * 9 8 7 30 30 H 1.09004 * 109.47144 * 29.69884 * 9 8 7 31 31 H 1.09001 * 109.49186 * 67.29185 * 11 10 9 32 32 H 1.08999 * 109.49207 * 307.21639 * 11 10 9 33 33 H 1.09004 * 109.63143 * 186.45915 * 12 11 10 34 34 H 1.09004 * 109.79153 * 65.97703 * 12 11 10 35 35 H 0.96993 * 120.00972 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.63087 * 68.24805 * 22 13 12 37 37 H 1.08996 * 109.63194 * 188.83501 * 22 13 12 38 38 H 1.09005 * 109.48966 * 292.70358 * 23 10 9 39 39 H 1.08993 * 109.49068 * 52.75434 * 23 10 9 40 40 H 1.08001 * 127.02724 * 180.27402 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4019 2.2202 -0.0005 5 6 3.5341 1.2780 -0.0006 6 6 4.4153 0.2355 -0.0003 7 8 5.6557 0.7321 -0.0056 8 6 5.6348 2.0741 -0.0004 9 6 6.8490 2.9667 -0.0008 10 7 7.2435 3.2575 1.3840 11 6 8.2698 4.3076 1.4296 12 6 8.7828 4.4537 2.8660 13 7 7.6306 4.6713 3.7539 14 6 7.6118 5.7173 4.6374 15 1 8.1793 6.6118 4.4275 16 6 6.8586 5.6301 5.8001 17 7 6.4470 4.4566 6.2313 18 14 6.4290 7.1784 6.7530 19 1 5.0916 7.6654 6.3292 20 1 6.4077 6.8751 8.2066 21 1 7.4462 8.2255 6.4807 22 6 6.5018 3.7321 3.6718 23 6 6.0759 3.6177 2.1994 24 6 4.3608 2.4943 -0.0007 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 4.1542 -0.8126 -0.0007 29 1 6.6146 3.8988 -0.5152 30 1 7.6689 2.4646 -0.5145 31 1 7.8382 5.2526 1.0996 32 1 9.0971 4.0364 0.7737 33 1 9.4592 5.3062 2.9284 34 1 9.3087 3.5467 3.1642 35 1 5.9210 4.3956 7.0440 36 1 6.8105 2.7551 4.0436 37 1 5.6692 4.1072 4.2669 38 1 5.6749 4.5723 1.8587 39 1 5.3120 2.8465 2.1014 40 1 4.0132 3.5168 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266758852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:39 Heat of formation + Delta-G solvation = -49.585086 kcal Electronic energy + Delta-G solvation = -23714.925038 eV Core-core repulsion = 20111.048422 eV Total energy + Delta-G solvation = -3603.876615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -43.73324 -41.22218 -39.69748 -37.51689 -36.43458 -34.15004 -33.54449 -31.75963 -31.50372 -29.10040 -28.36464 -26.27748 -25.02945 -24.28062 -24.02214 -22.21786 -21.23676 -20.78265 -18.90129 -18.46658 -18.21911 -17.72986 -17.25028 -17.06773 -16.78919 -16.11236 -15.94305 -15.61035 -15.34015 -14.96394 -14.91150 -14.69365 -14.33988 -14.25885 -13.94103 -13.59175 -13.17840 -13.09452 -12.97802 -12.77724 -12.64659 -12.30545 -12.07428 -11.90414 -11.86453 -11.83254 -11.66268 -11.47008 -10.92826 -10.60646 -9.79612 -9.27482 -8.70590 -7.88916 -5.33558 0.09826 0.79309 1.45045 1.46900 1.54923 1.55906 1.83416 1.95084 2.49610 3.03439 3.26925 3.46634 3.54800 3.67609 3.95124 4.18539 4.23904 4.27011 4.31683 4.34403 4.35043 4.46322 4.56914 4.63981 4.67278 4.71069 4.73657 4.88619 4.92846 5.02148 5.13023 5.18531 5.23157 5.36296 5.60217 5.64110 5.90815 6.09328 6.15299 6.35832 6.63241 7.11415 7.82735 8.36801 9.18032 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.016469 B = 0.003985 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.706557 B = 7024.973021 C = 8235.102208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.540 3.460 4 O -0.544 6.544 5 C -0.264 4.264 6 C 0.089 3.911 7 O -0.163 6.163 8 C 0.003 3.997 9 C 0.131 3.869 10 N -0.540 5.540 11 C 0.056 3.944 12 C 0.142 3.858 13 N -0.615 5.615 14 C -0.263 4.263 15 H 0.071 0.929 16 C -0.053 4.053 17 N -0.937 5.937 18 Si 0.967 3.033 19 H -0.289 1.289 20 H -0.294 1.294 21 H -0.265 1.265 22 C 0.188 3.812 23 C 0.051 3.949 24 C -0.169 4.169 25 H 0.140 0.860 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.264 0.736 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.031 0.969 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.018 0.982 35 H 0.249 0.751 36 H -0.004 1.004 37 H 0.052 0.948 38 H 0.020 0.980 39 H 0.070 0.930 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.293 -10.652 -17.475 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.270 6.270 3 C 0.388 3.612 4 O -0.436 6.436 5 C -0.266 4.266 6 C 0.018 3.982 7 O -0.057 6.057 8 C -0.046 4.046 9 C 0.004 3.996 10 N -0.266 5.266 11 C -0.073 4.073 12 C 0.016 3.984 13 N -0.339 5.339 14 C -0.393 4.393 15 H 0.089 0.911 16 C -0.248 4.248 17 N -0.583 5.583 18 Si 0.795 3.205 19 H -0.216 1.216 20 H -0.221 1.221 21 H -0.189 1.189 22 C 0.062 3.938 23 C -0.078 4.078 24 C -0.189 4.189 25 H 0.158 0.842 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.280 0.720 29 H 0.097 0.903 30 H 0.137 0.863 31 H 0.050 0.950 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.036 0.964 35 H 0.059 0.941 36 H 0.014 0.986 37 H 0.070 0.930 38 H 0.038 0.962 39 H 0.088 0.912 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.085 -10.950 -17.143 20.968 hybrid contribution -1.350 1.661 0.780 2.278 sum -6.436 -9.289 -16.364 19.887 Atomic orbital electron populations 1.23608 0.74075 1.06107 1.02506 1.86516 1.25374 1.30999 1.84102 1.20199 0.87843 0.81602 0.71584 1.90835 1.67340 1.37341 1.48108 1.20549 0.90432 0.95282 1.20362 1.25464 0.79074 1.00483 0.93215 1.83822 1.30791 1.21334 1.69794 1.22164 0.96324 0.80744 1.05364 1.20756 0.92770 0.95594 0.90460 1.62079 1.11435 1.43745 1.09307 1.22530 0.94892 0.91735 0.98140 1.21170 0.89395 0.98426 0.89373 1.44449 1.15834 1.31002 1.42622 1.19577 1.27624 0.93696 0.98397 0.91119 1.25803 1.02455 0.99086 0.97444 1.70192 1.41056 1.23688 1.23400 0.85250 0.78229 0.79719 0.77265 1.21590 1.22104 1.18906 1.20654 0.90688 0.90895 0.91591 1.22701 0.92291 0.97698 0.95111 1.22518 0.91292 0.98846 1.06275 0.84154 0.92423 0.91754 0.71999 0.90300 0.86277 0.95035 0.87443 0.91640 0.96449 0.94148 0.98583 0.92957 0.96158 0.91203 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.57 113.37 1.20 1.64 16 2 O -0.35 -7.33 10.42 -56.86 -0.59 -7.93 16 3 C 0.54 14.85 7.95 70.19 0.56 15.41 16 4 O -0.54 -18.66 16.77 19.73 0.33 -18.33 16 5 C -0.26 -6.81 6.31 -19.00 -0.12 -6.93 16 6 C 0.09 1.71 11.94 67.41 0.80 2.51 16 7 O -0.16 -3.85 10.52 4.78 0.05 -3.80 16 8 C 0.00 0.07 5.46 24.75 0.14 0.21 16 9 C 0.13 3.20 5.79 85.56 0.50 3.69 16 10 N -0.54 -17.96 4.77 -898.88 -4.29 -22.25 16 11 C 0.06 1.78 5.58 86.38 0.48 2.26 16 12 C 0.14 5.86 6.69 86.35 0.58 6.44 16 13 N -0.61 -31.89 3.03 -697.26 -2.11 -34.00 16 14 C -0.26 -14.77 9.63 84.03 0.81 -13.96 16 15 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 16 C -0.05 -3.02 4.93 84.86 0.42 -2.60 16 17 N -0.94 -57.20 11.16 21.65 0.24 -56.96 16 18 Si 0.97 45.88 29.59 68.60 2.03 47.91 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 C 0.19 9.63 5.45 86.50 0.47 10.10 16 23 C 0.05 2.06 4.95 86.54 0.43 2.49 16 24 C -0.17 -4.78 9.18 23.65 0.22 -4.56 16 25 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.26 2.38 8.06 -2.91 -0.02 2.35 16 29 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 30 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 2.59 8.11 -2.39 -0.02 2.57 16 33 H 0.07 2.55 7.95 -2.38 -0.02 2.53 16 34 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.05 3.03 6.11 -2.39 -0.01 3.02 16 38 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.07 2.73 5.56 -2.39 -0.01 2.71 16 40 H 0.15 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -74.73 335.25 3.17 -71.56 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.04 Total: 7.11 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 6.48 Total: 16.69 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -6.16 Total: -113.21 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.21 Total: -30.06 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -74.73 3.17 -71.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266758852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.971 kcal (2) G-P(sol) polarization free energy of solvation -74.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds