Wall clock time and date at job start Fri Apr 10 2020 17:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21284 * 119.99571 * 2 1 4 4 N 1.34776 * 120.00508 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99732 * 359.97438 * 4 2 1 6 6 C 1.46502 * 119.99908 * 180.02562 * 4 2 1 7 7 C 1.50704 * 109.46564 * 269.99427 * 6 4 2 8 8 O 1.21291 * 120.00259 * 0.02562 * 7 6 4 9 9 N 1.34779 * 119.99258 * 180.02562 * 7 6 4 10 10 C 1.40162 * 119.99437 * 180.02562 * 9 7 6 11 11 C 1.40415 * 125.97631 * 0.31570 * 10 9 7 12 12 C 1.35232 * 107.86655 * 180.13084 * 11 10 9 13 13 C 1.50703 * 126.06766 * 179.84998 * 12 11 10 14 14 N 1.34968 * 107.86163 * 359.58679 * 12 11 10 15 15 C 1.46509 * 125.97450 * 180.23081 * 14 12 11 16 16 C 1.50698 * 109.47025 * 89.99735 * 15 14 12 17 17 H 1.08000 * 120.00464 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99358 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00418 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99496 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47006 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46890 * 120.00230 * 20 18 16 23 23 H 1.48501 * 109.46779 * 239.99778 * 20 18 16 24 24 N 1.31221 * 125.97269 * 179.97438 * 10 9 7 25 25 H 1.09000 * 109.47257 * 239.99704 * 1 2 3 26 26 H 1.08999 * 109.47471 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47108 * 119.99925 * 1 2 3 28 28 H 1.09006 * 109.46897 * 270.00256 * 5 4 2 29 29 H 1.08998 * 109.47079 * 29.99815 * 5 4 2 30 30 H 1.08995 * 109.47208 * 150.00401 * 5 4 2 31 31 H 1.08995 * 109.46592 * 149.99889 * 6 4 2 32 32 H 1.08990 * 109.47210 * 29.99651 * 6 4 2 33 33 H 0.96991 * 120.00480 * 0.02562 * 9 7 6 34 34 H 1.07995 * 126.06342 * 0.02562 * 11 10 9 35 35 H 1.09002 * 109.47152 * 269.68932 * 13 12 11 36 36 H 1.09001 * 109.46980 * 149.69032 * 13 12 11 37 37 H 1.09004 * 109.47113 * 29.69013 * 13 12 11 38 38 H 1.08994 * 109.46750 * 210.00045 * 15 14 12 39 39 H 1.09004 * 109.46474 * 329.99737 * 15 14 12 40 40 H 0.96998 * 120.00265 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4485 -2.4359 -0.0005 6 6 3.6459 -1.1670 0.0000 7 6 4.1487 -1.1661 -1.4207 8 8 3.3608 -1.1652 -2.3428 9 7 5.4739 -1.1664 -1.6664 10 6 5.9415 -1.1650 -2.9877 11 6 5.1455 -1.1571 -4.1444 12 6 5.9706 -1.1614 -5.2159 13 6 5.5468 -1.1590 -6.6621 14 7 7.2410 -1.1624 -4.7601 15 6 8.4515 -1.1620 -5.5855 16 6 8.8670 0.2589 -5.8669 17 1 8.2878 1.0796 -5.4704 18 6 9.9874 0.5111 -6.6299 19 7 10.6931 -0.4882 -7.1124 20 14 10.5030 2.2725 -6.9783 21 1 9.5494 3.2055 -6.3262 22 1 11.8676 2.5044 -6.4406 23 1 10.5022 2.5077 -8.4445 24 7 7.1998 -1.1646 -3.3600 25 1 -0.3634 -0.5139 0.8899 26 1 -0.3634 1.0276 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.2672 -2.7507 1.0272 29 1 0.4959 -2.3055 -0.5139 30 1 2.0374 -3.1954 -0.5147 31 1 4.0091 -2.0572 0.5134 32 1 4.0090 -0.2774 0.5145 33 1 6.1039 -1.1675 -0.9290 34 1 4.0660 -1.1506 -4.1732 35 1 5.4444 -2.1861 -7.0124 36 1 6.2988 -0.6443 -7.2602 37 1 4.5906 -0.6448 -6.7596 38 1 9.2528 -1.6767 -5.0554 39 1 8.2500 -1.6748 -6.5260 40 1 11.4811 -0.3107 -7.6495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271162845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:44 Heat of formation + Delta-G solvation = 12.505475 kcal Electronic energy + Delta-G solvation = -23218.025768 eV Core-core repulsion = 19649.134353 eV Total energy + Delta-G solvation = -3568.891415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83122 -40.16275 -38.84445 -35.71620 -34.77347 -33.38782 -31.61814 -31.07624 -30.62846 -28.39686 -26.83075 -26.36790 -26.02984 -23.10999 -21.69218 -19.84935 -19.71789 -19.06384 -17.25862 -17.07909 -16.69278 -16.61072 -15.89348 -15.47871 -15.22811 -15.12760 -14.33111 -14.07092 -13.89231 -13.59192 -13.34667 -12.98056 -12.92886 -12.77646 -12.48696 -12.40522 -12.32192 -12.26793 -11.95626 -11.66774 -11.41338 -11.06498 -10.85488 -10.41944 -10.25588 -10.10821 -10.03175 -9.73432 -9.50804 -8.94375 -8.64779 -7.93597 -7.45489 -6.25659 -4.33209 2.26621 2.31577 2.59533 2.88644 3.00864 3.20933 3.28900 3.35968 3.71226 3.88493 4.30991 4.33944 4.63921 4.76031 4.81709 4.96239 5.04348 5.08064 5.09257 5.22181 5.35024 5.44342 5.58634 5.71724 5.94314 5.98811 6.09278 6.24764 6.47246 6.56076 6.72919 6.92918 7.03202 7.04848 7.44896 7.63851 7.67893 7.88890 7.91644 8.05450 8.24636 8.65459 8.75898 9.33445 10.81616 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.027076 B = 0.003066 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.885251 B = 9130.324188 C = 9362.719393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.516 3.484 3 O -0.540 6.540 4 N -0.603 5.603 5 C 0.082 3.918 6 C 0.101 3.899 7 C 0.501 3.499 8 O -0.509 6.509 9 N -0.630 5.630 10 C 0.263 3.737 11 C -0.289 4.289 12 C 0.091 3.909 13 C -0.088 4.088 14 N -0.317 5.317 15 C 0.258 3.742 16 C -0.536 4.536 17 H 0.065 0.935 18 C 0.065 3.935 19 N -0.892 5.892 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.280 1.280 24 N -0.320 5.320 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.410 0.590 34 H 0.157 0.843 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.396 -6.098 13.711 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.305 3.695 3 O -0.416 6.416 4 N -0.336 5.336 5 C -0.061 4.061 6 C -0.026 4.026 7 C 0.285 3.715 8 O -0.381 6.381 9 N -0.279 5.279 10 C 0.011 3.989 11 C -0.320 4.320 12 C -0.040 4.040 13 C -0.147 4.147 14 N -0.099 5.099 15 C 0.141 3.859 16 C -0.574 4.574 17 H 0.083 0.917 18 C -0.138 4.138 19 N -0.530 5.530 20 Si 0.733 3.267 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.206 1.206 24 N -0.151 5.151 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.246 0.754 34 H 0.175 0.825 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.207 -5.585 13.281 22.443 hybrid contribution 0.108 0.786 -0.139 0.805 sum -17.099 -4.799 13.142 22.094 Atomic orbital electron populations 1.21917 0.91335 1.05522 1.04163 1.20862 0.90835 0.82831 0.74924 1.90747 1.70741 1.31059 1.49042 1.47441 1.05011 1.07146 1.74029 1.21843 0.97651 0.85006 1.01632 1.21222 0.81790 1.06029 0.93589 1.21177 0.81438 0.76473 0.92377 1.90638 1.55007 1.47096 1.45398 1.42457 1.07353 1.72741 1.05300 1.18998 0.91931 1.03104 0.84897 1.21220 1.00793 1.21315 0.88700 1.21061 0.85268 1.00899 0.96804 1.20376 1.02231 1.02485 0.89581 1.48996 1.06617 1.52169 1.02124 1.19696 0.78886 0.98961 0.88391 1.21376 1.11505 0.91419 1.33136 0.91673 1.24929 0.95612 0.98144 0.95099 1.69924 1.17494 1.30985 1.34592 0.86304 0.78626 0.83733 0.78070 1.19538 1.20637 1.20620 1.77249 1.16156 1.29375 0.92303 0.89414 0.88993 0.89067 0.92227 0.90516 0.90763 0.87009 0.86483 0.75448 0.82525 0.91097 0.89879 0.90662 0.92992 0.92797 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 8.87 36.00 0.32 -0.86 16 2 C 0.52 5.96 7.78 -10.99 -0.09 5.88 16 3 O -0.54 -8.78 16.67 5.55 0.09 -8.69 16 4 N -0.60 -5.79 2.36 -182.96 -0.43 -6.22 16 5 C 0.08 0.47 10.24 59.85 0.61 1.08 16 6 C 0.10 0.98 5.89 -5.19 -0.03 0.95 16 7 C 0.50 7.28 7.87 -10.98 -0.09 7.19 16 8 O -0.51 -9.11 13.56 5.55 0.08 -9.04 16 9 N -0.63 -9.83 5.45 -11.13 -0.06 -9.89 16 10 C 0.26 5.47 8.11 -154.38 -1.25 4.22 16 11 C -0.29 -6.12 9.52 -39.83 -0.38 -6.50 16 12 C 0.09 1.97 6.92 -82.28 -0.57 1.40 16 13 C -0.09 -1.55 9.89 36.01 0.36 -1.19 16 14 N -0.32 -7.64 3.59 -58.32 -0.21 -7.85 16 15 C 0.26 6.70 5.81 -5.19 -0.03 6.67 16 16 C -0.54 -14.96 9.39 -34.44 -0.32 -15.28 16 17 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 18 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 20 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 N -0.32 -7.51 12.59 31.44 0.40 -7.12 16 25 H 0.09 0.36 8.11 -51.93 -0.42 -0.06 16 26 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 27 H 0.09 0.53 7.40 -51.93 -0.38 0.15 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.08 0.36 6.44 -51.93 -0.33 0.03 16 30 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 31 H 0.11 0.63 8.07 -51.93 -0.42 0.22 16 32 H 0.12 1.14 7.42 -51.93 -0.39 0.76 16 33 H 0.41 4.99 8.82 -40.82 -0.36 4.63 16 34 H 0.16 3.25 5.92 -52.49 -0.31 2.94 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.55 7.71 -51.93 -0.40 1.15 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.05 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 346.53 15.07 5.22 5.22 Total: -1.00 -36.96 346.53 -6.26 -43.21 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.49 Total: 3.23 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -1.57 Total: 5.25 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.43 Total: -55.55 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.17 Total: -17.73 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.96 -6.26 -43.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271162845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.716 kcal (2) G-P(sol) polarization free energy of solvation -36.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds