Wall clock time and date at job start Fri Apr 10 2020 17:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46505 * 119.99692 * 2 1 4 4 C 1.52995 * 109.47156 * 270.00101 * 3 2 1 5 5 H 1.08992 * 109.47146 * 60.00260 * 4 3 2 6 6 O 1.42899 * 109.46868 * 299.99988 * 4 3 2 7 7 C 1.53005 * 109.46965 * 180.02562 * 4 3 2 8 8 O 1.42899 * 109.47121 * 184.99994 * 7 4 3 9 9 C 1.34772 * 120.00287 * 179.97438 * 2 1 3 10 10 O 1.21582 * 119.99916 * 179.97438 * 9 2 1 11 11 N 1.34776 * 119.99762 * 0.02562 * 9 2 1 12 12 C 1.39248 * 119.99799 * 185.22390 * 11 9 2 13 13 C 1.39485 * 119.83225 * 213.48293 * 12 11 9 14 14 C 1.36371 * 120.16309 * 180.21311 * 13 12 11 15 15 C 1.40865 * 119.83216 * 359.51933 * 14 13 12 16 16 C 1.41162 * 120.16597 * 180.27473 * 15 14 13 17 17 H 1.08002 * 119.99916 * 335.03928 * 16 15 14 18 18 C 1.39889 * 119.99910 * 155.03258 * 16 15 14 19 19 N 1.30878 * 120.00377 * 342.39943 * 18 16 15 20 20 Si 1.86808 * 119.99638 * 162.39684 * 18 16 15 21 21 H 1.48507 * 109.46866 * 94.69329 * 20 18 16 22 22 H 1.48500 * 109.46933 * 214.69097 * 20 18 16 23 23 H 1.48493 * 109.47288 * 334.69533 * 20 18 16 24 24 C 1.40871 * 119.67181 * 0.25279 * 15 14 13 25 25 C 1.36367 * 119.82795 * 0.02562 * 24 15 14 26 26 H 1.08997 * 109.46750 * 269.99830 * 1 2 3 27 27 H 1.08996 * 109.47337 * 29.99988 * 1 2 3 28 28 H 1.09002 * 109.46756 * 149.99924 * 1 2 3 29 29 H 1.09005 * 109.47078 * 30.00208 * 3 2 1 30 30 H 1.08999 * 109.46917 * 149.99795 * 3 2 1 31 31 H 0.96704 * 114.00142 * 299.99679 * 6 4 3 32 32 H 1.09004 * 109.46743 * 304.99692 * 7 4 3 33 33 H 1.08996 * 109.46945 * 64.99878 * 7 4 3 34 34 H 0.96701 * 114.00491 * 179.97438 * 8 7 4 35 35 H 0.96992 * 120.00355 * 5.22835 * 11 9 2 36 36 H 1.07994 * 119.91733 * 0.02562 * 13 12 11 37 37 H 1.08007 * 120.08136 * 179.79500 * 14 13 12 38 38 H 0.97002 * 120.00232 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.08368 * 180.02562 * 24 15 14 40 40 H 1.07998 * 119.91437 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 1.5001 1.8408 -1.9562 6 8 3.2248 0.7146 -2.1160 7 6 3.2180 3.0353 -1.4424 8 8 3.3544 3.5066 -2.7845 9 6 2.1390 -1.1671 0.0005 10 8 3.3548 -1.1670 0.0001 11 7 1.4651 -2.3343 0.0005 12 6 2.1570 -3.5377 0.1109 13 6 1.6825 -4.6736 -0.5451 14 6 2.3524 -5.8566 -0.4381 15 6 3.5318 -5.9272 0.3289 16 6 4.2340 -7.1467 0.4397 17 1 3.7136 -8.0836 0.3055 18 6 5.6039 -7.1418 0.7231 19 7 6.3044 -6.0502 0.5486 20 14 6.4333 -8.6936 1.3506 21 1 7.0263 -9.4344 0.2083 22 1 7.5038 -8.3281 2.3128 23 1 5.4294 -9.5517 2.0294 24 6 4.0073 -4.7746 0.9845 25 6 3.3236 -3.6000 0.8729 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1385 0.5139 31 1 4.0873 0.5462 -1.7125 32 1 2.6709 3.7710 -0.8528 33 1 4.2062 2.8838 -1.0082 34 1 3.8306 4.3448 -2.8606 35 1 0.4982 -2.3362 -0.0764 36 1 0.7808 -4.6167 -1.1366 37 1 1.9820 -6.7361 -0.9439 38 1 7.2542 -6.0467 0.7455 39 1 4.9111 -4.8211 1.5740 40 1 3.6866 -2.7156 1.3753 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274948711.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:49 Heat of formation + Delta-G solvation = -94.458098 kcal Electronic energy + Delta-G solvation = -23535.339699 eV Core-core repulsion = 19929.517244 eV Total energy + Delta-G solvation = -3605.822455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.15543 -38.28442 -37.29226 -35.95324 -34.94074 -34.37394 -32.84411 -30.62770 -29.41300 -28.79713 -27.14269 -25.76122 -24.28898 -21.96738 -21.26605 -20.81882 -19.24924 -18.09729 -17.51351 -17.23725 -16.78511 -16.15023 -16.02387 -15.70620 -15.11616 -14.53976 -14.10988 -13.90543 -13.69210 -13.48083 -13.31777 -12.84283 -12.81782 -12.61972 -12.45599 -11.98871 -11.84088 -11.69446 -11.40630 -11.08219 -11.02380 -10.87992 -10.45235 -10.37682 -10.12155 -9.90968 -9.80484 -9.44841 -9.17715 -8.62127 -8.47380 -7.44135 -6.90068 -6.65872 -4.20662 2.73712 2.87312 3.11585 3.12650 3.16919 3.21042 3.73134 3.97736 3.99190 4.33785 4.48786 4.72419 4.80410 4.89282 5.00488 5.01278 5.06667 5.19343 5.35285 5.51442 5.53496 5.77997 5.90376 6.22259 6.43060 6.48023 6.88322 6.91154 7.12571 7.17215 7.35481 7.36039 7.38847 7.69130 7.85369 7.88933 8.08756 8.13129 8.33919 8.52746 8.70875 8.96487 9.00485 9.19926 10.26733 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.003359 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.083129 B = 8334.648441 C = 9031.387620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.633 5.633 3 C 0.106 3.894 4 C 0.091 3.909 5 H 0.098 0.902 6 O -0.542 6.542 7 C 0.046 3.954 8 O -0.563 6.563 9 C 0.704 3.296 10 O -0.571 6.571 11 N -0.666 5.666 12 C 0.016 3.984 13 C -0.108 4.108 14 C -0.214 4.214 15 C 0.104 3.896 16 C -0.461 4.461 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.790 5.790 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.154 4.154 25 C -0.086 4.086 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.380 0.620 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.376 0.624 35 H 0.389 0.611 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.280 0.720 39 H 0.119 0.881 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.317 16.210 0.778 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.372 5.372 3 C -0.018 4.018 4 C 0.029 3.971 5 H 0.116 0.884 6 O -0.347 6.347 7 C -0.033 4.033 8 O -0.368 6.368 9 C 0.406 3.594 10 O -0.447 6.447 11 N -0.313 5.313 12 C -0.076 4.076 13 C -0.128 4.128 14 C -0.234 4.234 15 C 0.101 3.899 16 C -0.491 4.491 17 H 0.095 0.905 18 C -0.143 4.143 19 N -0.415 5.415 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.174 4.174 25 C -0.107 4.107 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.229 0.771 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.223 0.777 35 H 0.224 0.776 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.137 0.863 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.034 15.729 0.303 17.665 hybrid contribution 0.627 0.073 0.624 0.888 sum -7.406 15.802 0.926 17.476 Atomic orbital electron populations 1.21678 0.80311 1.02790 1.01414 1.46805 1.05845 1.04694 1.79830 1.21818 0.98767 0.85032 0.96221 1.22333 0.95463 0.85842 0.93440 0.88390 1.86611 1.33708 1.58489 1.55911 1.22899 0.99791 0.96546 0.84111 1.86574 1.80218 1.43243 1.26772 1.15807 0.85440 0.80092 0.78062 1.90874 1.11350 1.85542 1.56964 1.42239 1.08921 1.03878 1.76301 1.16999 0.98977 0.83668 1.07996 1.20007 0.99827 0.93246 0.99749 1.20520 1.00688 0.96179 1.06045 1.17643 0.90539 0.93232 0.88452 1.19509 0.93111 0.93794 1.42677 0.90504 1.25915 0.97843 0.97554 0.93004 1.69874 1.08427 1.28658 1.34556 0.86343 0.79190 0.82009 0.79403 1.19654 1.20102 1.18493 1.20967 1.01195 0.92304 1.02957 1.20425 0.94585 0.97546 0.98101 0.92765 0.91252 0.91503 0.90003 0.89216 0.77099 0.92981 0.93026 0.77708 0.77609 0.89388 0.88713 0.90912 0.86339 0.88001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.25 59.85 0.61 1.38 16 2 N -0.63 -8.55 2.83 -187.35 -0.53 -9.08 16 3 C 0.11 1.17 5.15 -4.04 -0.02 1.15 16 4 C 0.09 1.07 3.52 -26.73 -0.09 0.97 16 5 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 6 O -0.54 -8.82 12.11 -52.50 -0.64 -9.46 16 7 C 0.05 0.41 6.68 37.16 0.25 0.66 16 8 O -0.56 -5.92 13.62 -40.10 -0.55 -6.46 16 9 C 0.70 13.15 7.51 -86.92 -0.65 12.50 16 10 O -0.57 -12.79 12.35 -3.44 -0.04 -12.83 16 11 N -0.67 -12.50 5.19 -14.10 -0.07 -12.57 16 12 C 0.02 0.37 6.29 -83.56 -0.53 -0.15 16 13 C -0.11 -2.46 9.89 -39.79 -0.39 -2.85 16 14 C -0.21 -5.35 9.74 -39.26 -0.38 -5.73 16 15 C 0.10 2.85 5.57 -106.80 -0.59 2.25 16 16 C -0.46 -12.49 9.04 -37.86 -0.34 -12.83 16 17 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 18 C 0.07 1.93 5.14 -17.34 -0.09 1.84 16 19 N -0.79 -21.25 10.96 55.54 0.61 -20.64 16 20 Si 0.91 19.04 29.59 -169.99 -5.03 14.01 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.15 -4.22 8.64 -39.26 -0.34 -4.56 16 25 C -0.09 -2.20 8.57 -39.79 -0.34 -2.54 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 28 H 0.07 0.61 6.29 -51.93 -0.33 0.29 16 29 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 30 H 0.09 1.10 7.42 -51.93 -0.39 0.72 16 31 H 0.38 5.94 8.45 45.56 0.38 6.32 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.38 2.04 9.12 45.56 0.42 2.45 16 35 H 0.39 5.84 6.50 -40.82 -0.27 5.58 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.09 2.20 8.06 -52.48 -0.42 1.78 16 38 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 39 H 0.12 3.35 6.17 -52.48 -0.32 3.03 16 40 H 0.10 2.60 6.38 -52.49 -0.33 2.27 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -34.75 335.34 -7.87 -42.62 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -3.76 Total: 17.26 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -2.91 Total: -7.91 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.01 Total: -42.29 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.22 Total: -28.75 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.75 -7.87 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274948711.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.834 kcal (2) G-P(sol) polarization free energy of solvation -34.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds