Wall clock time and date at job start Fri Apr 10 2020 17:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46505 * 119.99692 * 2 1 4 4 C 1.52995 * 109.47156 * 270.00101 * 3 2 1 5 5 H 1.08992 * 109.47146 * 60.00260 * 4 3 2 6 6 O 1.42899 * 109.46868 * 299.99988 * 4 3 2 7 7 C 1.53005 * 109.46965 * 180.02562 * 4 3 2 8 8 O 1.42899 * 109.47121 * 184.99994 * 7 4 3 9 9 C 1.34772 * 120.00287 * 179.97438 * 2 1 3 10 10 O 1.21582 * 119.99916 * 179.97438 * 9 2 1 11 11 N 1.34776 * 119.99762 * 0.02562 * 9 2 1 12 12 C 1.39248 * 119.99799 * 185.22390 * 11 9 2 13 13 C 1.39485 * 119.83225 * 213.48293 * 12 11 9 14 14 C 1.36371 * 120.16309 * 180.21311 * 13 12 11 15 15 C 1.40865 * 119.83216 * 359.51933 * 14 13 12 16 16 C 1.41162 * 120.16597 * 180.27473 * 15 14 13 17 17 H 1.08002 * 119.99916 * 335.03928 * 16 15 14 18 18 C 1.39889 * 119.99910 * 155.03258 * 16 15 14 19 19 N 1.30878 * 120.00377 * 342.39943 * 18 16 15 20 20 Si 1.86808 * 119.99638 * 162.39684 * 18 16 15 21 21 H 1.48507 * 109.46866 * 94.69329 * 20 18 16 22 22 H 1.48500 * 109.46933 * 214.69097 * 20 18 16 23 23 H 1.48493 * 109.47288 * 334.69533 * 20 18 16 24 24 C 1.40871 * 119.67181 * 0.25279 * 15 14 13 25 25 C 1.36367 * 119.82795 * 0.02562 * 24 15 14 26 26 H 1.08997 * 109.46750 * 269.99830 * 1 2 3 27 27 H 1.08996 * 109.47337 * 29.99988 * 1 2 3 28 28 H 1.09002 * 109.46756 * 149.99924 * 1 2 3 29 29 H 1.09005 * 109.47078 * 30.00208 * 3 2 1 30 30 H 1.08999 * 109.46917 * 149.99795 * 3 2 1 31 31 H 0.96704 * 114.00142 * 299.99679 * 6 4 3 32 32 H 1.09004 * 109.46743 * 304.99692 * 7 4 3 33 33 H 1.08996 * 109.46945 * 64.99878 * 7 4 3 34 34 H 0.96701 * 114.00491 * 179.97438 * 8 7 4 35 35 H 0.96992 * 120.00355 * 5.22835 * 11 9 2 36 36 H 1.07994 * 119.91733 * 0.02562 * 13 12 11 37 37 H 1.08007 * 120.08136 * 179.79500 * 14 13 12 38 38 H 0.97002 * 120.00232 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.08368 * 180.02562 * 24 15 14 40 40 H 1.07998 * 119.91437 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 1 1.5001 1.8408 -1.9562 6 8 3.2248 0.7146 -2.1160 7 6 3.2180 3.0353 -1.4424 8 8 3.3544 3.5066 -2.7845 9 6 2.1390 -1.1671 0.0005 10 8 3.3548 -1.1670 0.0001 11 7 1.4651 -2.3343 0.0005 12 6 2.1570 -3.5377 0.1109 13 6 1.6825 -4.6736 -0.5451 14 6 2.3524 -5.8566 -0.4381 15 6 3.5318 -5.9272 0.3289 16 6 4.2340 -7.1467 0.4397 17 1 3.7136 -8.0836 0.3055 18 6 5.6039 -7.1418 0.7231 19 7 6.3044 -6.0502 0.5486 20 14 6.4333 -8.6936 1.3506 21 1 7.0263 -9.4344 0.2083 22 1 7.5038 -8.3281 2.3128 23 1 5.4294 -9.5517 2.0294 24 6 4.0073 -4.7746 0.9845 25 6 3.3236 -3.6000 0.8729 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6084 2.0284 0.5139 30 1 3.1499 1.1385 0.5139 31 1 4.0873 0.5462 -1.7125 32 1 2.6709 3.7710 -0.8528 33 1 4.2062 2.8838 -1.0082 34 1 3.8306 4.3448 -2.8606 35 1 0.4982 -2.3362 -0.0764 36 1 0.7808 -4.6167 -1.1366 37 1 1.9820 -6.7361 -0.9439 38 1 7.2542 -6.0467 0.7455 39 1 4.9111 -4.8211 1.5740 40 1 3.6866 -2.7156 1.3753 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274948711.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:48 Heat of formation + Delta-G solvation = -122.103046 kcal Electronic energy + Delta-G solvation = -23536.538474 eV Core-core repulsion = 19929.517244 eV Total energy + Delta-G solvation = -3607.021230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.54935 -39.59774 -38.75423 -36.95270 -36.14982 -36.10515 -34.61902 -31.72921 -31.35900 -30.56430 -27.97141 -27.22136 -25.74539 -23.25133 -23.01350 -22.38367 -20.72793 -19.44531 -19.17646 -18.34854 -18.03130 -17.47180 -17.21491 -16.84969 -16.71937 -15.82772 -15.73727 -15.45111 -14.76002 -14.69705 -14.50662 -14.42797 -14.05085 -13.88666 -13.66971 -13.62796 -13.40438 -13.18953 -12.78619 -12.68387 -12.60875 -12.27148 -11.99255 -11.72374 -11.67277 -11.23879 -11.20500 -10.98074 -10.92325 -10.46181 -9.58664 -9.41942 -8.78295 -8.56792 -6.22253 0.90638 1.17023 1.39182 1.48119 1.55742 1.71090 2.22025 2.27361 2.81127 3.03243 3.27691 3.56745 3.77771 3.98029 4.07766 4.25683 4.29488 4.32992 4.44911 4.50288 4.52001 4.59287 4.74023 4.86232 4.96698 5.03417 5.12022 5.20437 5.32563 5.46943 5.56271 5.68502 5.80902 6.09190 6.14749 6.17975 6.39144 6.71723 6.72757 6.89020 6.96431 7.05435 7.08636 7.72413 8.37326 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.003359 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.083129 B = 8334.648441 C = 9031.387620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.625 5.625 3 C 0.106 3.894 4 C 0.085 3.915 5 H 0.099 0.901 6 O -0.574 6.574 7 C 0.050 3.950 8 O -0.591 6.591 9 C 0.695 3.305 10 O -0.616 6.616 11 N -0.662 5.662 12 C 0.031 3.969 13 C -0.105 4.105 14 C -0.222 4.222 15 C 0.071 3.929 16 C -0.496 4.496 17 H 0.081 0.919 18 C 0.030 3.970 19 N -0.830 5.830 20 Si 0.985 3.015 21 H -0.263 1.263 22 H -0.269 1.269 23 H -0.255 1.255 24 C -0.177 4.177 25 C -0.098 4.098 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.129 0.871 30 H 0.072 0.928 31 H 0.377 0.623 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.397 0.603 35 H 0.410 0.590 36 H 0.129 0.871 37 H 0.109 0.891 38 H 0.286 0.714 39 H 0.096 0.904 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.362 17.442 0.805 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.362 5.362 3 C -0.018 4.018 4 C 0.024 3.976 5 H 0.117 0.883 6 O -0.381 6.381 7 C -0.029 4.029 8 O -0.400 6.400 9 C 0.397 3.603 10 O -0.496 6.496 11 N -0.311 5.311 12 C -0.063 4.063 13 C -0.126 4.126 14 C -0.242 4.242 15 C 0.069 3.931 16 C -0.526 4.526 17 H 0.099 0.901 18 C -0.184 4.184 19 N -0.456 5.456 20 Si 0.805 3.195 21 H -0.187 1.187 22 H -0.193 1.193 23 H -0.178 1.178 24 C -0.197 4.197 25 C -0.119 4.119 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.147 0.853 30 H 0.090 0.910 31 H 0.225 0.775 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.247 0.753 35 H 0.248 0.752 36 H 0.147 0.853 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.157 17.039 0.322 19.839 hybrid contribution 1.119 -0.080 0.559 1.254 sum -9.037 16.959 0.881 19.237 Atomic orbital electron populations 1.22022 0.77340 1.04437 1.03230 1.46879 1.07718 1.03645 1.77975 1.22025 0.98820 0.84842 0.96125 1.22552 0.95318 0.86364 0.93335 0.88284 1.86560 1.33927 1.60338 1.57248 1.22852 1.00071 0.95879 0.84071 1.86506 1.80837 1.44915 1.27728 1.16099 0.85123 0.81264 0.77789 1.90851 1.13595 1.86418 1.58713 1.42053 1.09831 1.02741 1.76468 1.17054 0.97877 0.85514 1.05878 1.20349 1.00790 0.92124 0.99307 1.20795 1.00132 0.97699 1.05601 1.17982 0.92024 0.93546 0.89586 1.19794 0.94202 0.93903 1.44694 0.90121 1.26849 0.98074 1.01095 0.92400 1.69956 1.09012 1.31080 1.35589 0.85166 0.78014 0.77410 0.78906 1.18732 1.19350 1.17848 1.20867 1.01279 0.93492 1.04097 1.20447 0.95859 0.96563 0.99011 0.90796 0.88228 0.91355 0.85266 0.90966 0.77505 0.89338 0.92850 0.75320 0.75176 0.85299 0.87270 0.90362 0.88556 0.88859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 10.25 127.77 1.31 2.37 16 2 N -0.63 -15.46 2.83 -864.92 -2.45 -17.90 16 3 C 0.11 2.08 5.15 86.38 0.44 2.52 16 4 C 0.08 1.84 3.52 30.59 0.11 1.95 16 5 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 6 O -0.57 -18.83 12.11 -132.47 -1.60 -20.44 16 7 C 0.05 0.79 6.68 71.98 0.48 1.27 16 8 O -0.59 -11.39 13.62 -144.33 -1.97 -13.36 16 9 C 0.70 25.49 7.51 179.06 1.35 26.84 16 10 O -0.62 -28.25 12.35 4.38 0.05 -28.19 16 11 N -0.66 -23.90 5.19 -316.78 -1.64 -25.54 16 12 C 0.03 1.42 6.29 38.56 0.24 1.66 16 13 C -0.11 -4.67 9.89 22.13 0.22 -4.45 16 14 C -0.22 -11.11 9.74 22.48 0.22 -10.89 16 15 C 0.07 4.03 5.57 -21.27 -0.12 3.91 16 16 C -0.50 -27.73 9.04 23.39 0.21 -27.51 16 17 H 0.08 4.26 7.90 -2.91 -0.02 4.24 16 18 C 0.03 1.58 5.14 85.23 0.44 2.02 16 19 N -0.83 -46.58 10.96 21.82 0.24 -46.34 16 20 Si 0.98 39.76 29.59 68.60 2.03 41.79 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 22 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 23 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 24 C -0.18 -10.19 8.64 22.48 0.19 -9.99 16 25 C -0.10 -5.20 8.57 22.13 0.19 -5.01 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 0.93 8.07 -2.39 -0.02 0.91 16 28 H 0.07 1.01 6.29 -2.39 -0.02 0.99 16 29 H 0.13 1.33 8.07 -2.38 -0.02 1.32 16 30 H 0.07 1.72 7.42 -2.39 -0.02 1.70 16 31 H 0.38 12.35 8.45 -74.05 -0.63 11.72 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.40 3.55 9.12 -74.06 -0.68 2.88 16 35 H 0.41 11.20 6.50 -92.71 -0.60 10.60 16 36 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 37 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 38 H 0.29 14.56 8.30 -92.71 -0.77 13.79 16 39 H 0.10 5.84 6.17 -2.91 -0.02 5.82 16 40 H 0.09 5.01 6.38 -2.91 -0.02 4.99 16 Total: -1.00 -79.81 335.34 -0.86 -80.67 By element: Atomic # 1 Polarization: 45.44 SS G_CDS: -0.81 Total: 44.63 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 5.28 Total: -15.32 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -3.85 Total: -89.78 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -3.52 Total: -61.99 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -79.81 -0.86 -80.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274948711.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.437 kcal (2) G-P(sol) polarization free energy of solvation -79.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds