Wall clock time and date at job start Fri Apr 10 2020 17:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40192 * 120.36827 * 2 1 4 4 C 1.35347 * 119.94760 * 179.77347 * 3 2 1 5 5 N 1.35757 * 120.70224 * 0.51156 * 4 3 2 6 6 C 1.46503 * 119.62705 * 179.76234 * 5 4 3 7 7 C 1.53005 * 109.47131 * 269.72887 * 6 5 4 8 8 C 1.52998 * 109.47164 * 59.99845 * 7 6 5 9 9 O 1.42901 * 109.46946 * 299.99674 * 7 6 5 10 10 C 1.50700 * 109.46879 * 179.97438 * 7 6 5 11 11 O 1.21283 * 120.00393 * 340.80052 * 10 7 6 12 12 N 1.34777 * 119.99593 * 160.79619 * 10 7 6 13 13 C 1.46502 * 120.00180 * 354.54852 * 12 10 7 14 14 C 1.37098 * 119.99732 * 174.82762 * 12 10 7 15 15 H 1.07995 * 120.00066 * 339.98430 * 14 12 10 16 16 C 1.38956 * 119.99706 * 159.99052 * 14 12 10 17 17 N 1.31407 * 120.00119 * 342.79926 * 16 14 12 18 18 Si 1.86803 * 119.99745 * 162.80050 * 16 14 12 19 19 H 1.48500 * 109.46911 * 94.98428 * 18 16 14 20 20 H 1.48502 * 109.46739 * 214.98120 * 18 16 14 21 21 H 1.48497 * 109.47311 * 334.98254 * 18 16 14 22 22 C 1.34655 * 120.75242 * 359.48682 * 5 4 3 23 23 O 1.22064 * 119.98833 * 180.27670 * 22 5 4 24 24 C 1.36402 * 120.36704 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.46675 * 269.97466 * 1 2 3 26 26 H 1.08998 * 109.47138 * 29.97190 * 1 2 3 27 27 H 1.08998 * 109.47099 * 149.97601 * 1 2 3 28 28 H 1.08007 * 120.02424 * 0.04584 * 3 2 1 29 29 H 1.08007 * 119.64544 * 180.27443 * 4 3 2 30 30 H 1.08990 * 109.47552 * 149.72320 * 6 5 4 31 31 H 1.09008 * 109.46898 * 29.72217 * 6 5 4 32 32 H 1.08998 * 109.46921 * 180.02562 * 8 7 6 33 33 H 1.09006 * 109.46778 * 299.99775 * 8 7 6 34 34 H 1.08999 * 109.47389 * 59.99627 * 8 7 6 35 35 H 0.96701 * 113.99564 * 300.00086 * 9 7 6 36 36 H 1.09000 * 109.46583 * 34.01856 * 13 12 10 37 37 H 1.08999 * 109.47062 * 154.01817 * 13 12 10 38 38 H 1.08999 * 109.47338 * 274.02139 * 13 12 10 39 39 H 0.96998 * 120.00111 * 180.02562 * 17 16 14 40 40 H 1.07992 * 120.34534 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1996 0.0046 5 7 4.2538 0.0273 -0.0011 6 6 5.7187 0.0441 -0.0012 7 6 6.2286 0.0501 -1.4438 8 6 5.7043 1.2934 -2.1649 9 8 5.7657 -1.1221 -2.1174 10 6 7.7355 0.0680 -1.4438 11 8 8.3379 0.4206 -0.4519 12 7 8.4138 -0.3080 -2.5460 13 6 7.6926 -0.8468 -3.7018 14 6 9.7793 -0.1915 -2.5836 15 1 10.2833 0.4765 -1.9009 16 6 10.5149 -0.9329 -3.5002 17 7 9.9721 -1.9747 -4.0892 18 14 12.2753 -0.4487 -3.8950 19 1 13.2070 -1.2345 -3.0466 20 1 12.5558 -0.7264 -5.3266 21 1 12.4627 0.9996 -3.6257 22 6 3.6017 -1.1508 -0.0012 23 8 4.2312 -2.1966 -0.0013 24 6 2.1966 -1.1769 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6822 2.1486 0.0007 29 1 4.1103 2.1344 0.0091 30 1 6.0923 -0.8416 0.5126 31 1 6.0718 0.9383 0.5127 32 1 6.0672 1.2974 -3.1926 33 1 4.6143 1.2809 -2.1648 34 1 6.0573 2.1875 -1.6510 35 1 6.0606 -1.9499 -1.7139 36 1 6.7230 -0.3560 -3.7860 37 1 8.2712 -0.6661 -4.6077 38 1 7.5469 -1.9192 -3.5715 39 1 10.4857 -2.4925 -4.7287 40 1 1.6683 -2.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279601191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:55 Heat of formation + Delta-G solvation = -71.077601 kcal Electronic energy + Delta-G solvation = -24731.892448 eV Core-core repulsion = 21127.083847 eV Total energy + Delta-G solvation = -3604.808601 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.39470 -39.16233 -36.88061 -36.36852 -35.05788 -34.61248 -31.58230 -31.21522 -30.01415 -28.84703 -26.36069 -26.14945 -24.82254 -23.57924 -22.35373 -21.20086 -19.13251 -17.87249 -17.41690 -16.86418 -16.36336 -15.97104 -15.87161 -15.05028 -14.75234 -14.38317 -14.20304 -14.12553 -13.84808 -13.48049 -13.41155 -13.11115 -12.77675 -12.34339 -12.27163 -12.00387 -11.84587 -11.78523 -11.66818 -11.47425 -11.38507 -11.25111 -10.92223 -10.89301 -10.44789 -10.31721 -10.02340 -9.75492 -9.52333 -9.00775 -8.25811 -7.82393 -7.73332 -6.37823 -3.90116 0.87698 1.94266 2.76301 3.11442 3.22257 3.27770 3.69665 3.75269 4.08015 4.45276 4.58052 4.62801 4.78757 4.86859 4.96959 5.01119 5.09654 5.19597 5.32833 5.35016 5.50646 5.62841 5.65973 5.68201 5.91321 5.93561 5.98940 6.00816 6.18483 6.32958 6.35997 6.58902 6.70211 6.97808 7.24344 7.33864 7.51741 7.93039 8.10947 8.25572 8.43491 9.11068 9.37309 9.90260 10.64528 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.036631 B = 0.003930 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.202386 B = 7123.558457 C = 7308.565735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.009 3.991 3 C -0.243 4.243 4 C 0.145 3.855 5 N -0.485 5.485 6 C 0.082 3.918 7 C 0.117 3.883 8 C -0.140 4.140 9 O -0.543 6.543 10 C 0.412 3.588 11 O -0.595 6.595 12 N -0.422 5.422 13 C 0.114 3.886 14 C -0.314 4.314 15 H 0.100 0.900 16 C 0.033 3.967 17 N -0.868 5.868 18 Si 0.925 3.075 19 H -0.277 1.277 20 H -0.281 1.281 21 H -0.268 1.268 22 C 0.520 3.480 23 O -0.548 6.548 24 C -0.250 4.250 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.141 0.859 29 H 0.160 0.840 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.384 0.616 36 H 0.046 0.954 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.269 0.731 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.858 6.947 4.116 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.006 3.994 3 C -0.266 4.266 4 C 0.016 3.984 5 N -0.194 5.194 6 C -0.040 4.040 7 C 0.072 3.928 8 C -0.197 4.197 9 O -0.350 6.350 10 C 0.198 3.802 11 O -0.482 6.482 12 N -0.138 5.138 13 C -0.030 4.030 14 C -0.442 4.442 15 H 0.118 0.882 16 C -0.171 4.171 17 N -0.506 5.506 18 Si 0.751 3.249 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.193 1.193 22 C 0.323 3.677 23 O -0.430 6.430 24 C -0.272 4.272 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.159 0.841 29 H 0.177 0.823 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.234 0.766 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.312 6.691 4.015 18.083 hybrid contribution 1.109 -0.298 -0.039 1.149 sum -15.204 6.393 3.976 16.966 Atomic orbital electron populations 1.20895 0.90720 1.03306 1.02794 1.20138 0.96471 0.92768 0.90045 1.20444 0.92381 0.98697 1.15101 1.21972 0.93467 0.90136 0.92818 1.45504 1.08963 1.06720 1.58208 1.22482 0.76238 1.06583 0.98730 1.21460 0.92530 0.88323 0.90531 1.21863 1.00964 0.94896 1.01982 1.86525 1.77114 1.15543 1.55811 1.20287 0.88218 0.87554 0.84116 1.90520 1.69730 1.54919 1.33059 1.43633 1.06563 1.52250 1.11402 1.21670 0.93524 0.98399 0.89375 1.19722 0.81056 1.23750 1.19626 0.88225 1.25357 1.00209 0.94285 0.97275 1.70068 1.38160 1.14601 1.27781 0.85943 0.81943 0.79281 0.77707 1.20311 1.20688 1.19292 1.17007 0.89073 0.82743 0.78923 1.90927 1.69173 1.30267 1.52640 1.21932 0.92666 0.99278 1.13328 0.90420 0.90975 0.91006 0.84124 0.82307 0.87661 0.87508 0.90691 0.91933 0.90973 0.76581 0.93525 0.91706 0.92970 0.92077 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.03 36.01 0.36 -0.47 16 2 C 0.01 0.10 5.89 -104.55 -0.62 -0.52 16 3 C -0.24 -2.25 9.71 -39.88 -0.39 -2.64 16 4 C 0.14 1.54 8.13 -16.85 -0.14 1.40 16 5 N -0.48 -6.98 2.33 -119.77 -0.28 -7.26 16 6 C 0.08 1.36 4.11 -4.04 -0.02 1.34 16 7 C 0.12 2.16 0.72 -91.77 -0.07 2.09 16 8 C -0.14 -2.16 7.93 37.16 0.29 -1.86 16 9 O -0.54 -10.50 8.47 -44.72 -0.38 -10.88 16 10 C 0.41 9.82 6.58 -10.99 -0.07 9.75 16 11 O -0.60 -15.89 15.73 5.55 0.09 -15.80 16 12 N -0.42 -10.82 3.02 -122.19 -0.37 -11.19 16 13 C 0.11 2.65 7.36 59.85 0.44 3.09 16 14 C -0.31 -8.74 9.29 -14.93 -0.14 -8.88 16 15 H 0.10 2.89 7.44 -52.49 -0.39 2.49 16 16 C 0.03 0.89 4.97 -17.47 -0.09 0.80 16 17 N -0.87 -23.37 10.82 55.50 0.60 -22.77 16 18 Si 0.93 20.61 29.59 -169.99 -5.03 15.58 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 C 0.52 8.58 6.91 -15.45 -0.11 8.47 16 23 O -0.55 -11.03 15.38 -4.63 -0.07 -11.10 16 24 C -0.25 -3.33 9.65 -39.38 -0.38 -3.71 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 27 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 29 H 0.16 1.23 7.93 -52.48 -0.42 0.81 16 30 H 0.11 1.98 7.39 -51.93 -0.38 1.60 16 31 H 0.11 1.62 7.77 -51.92 -0.40 1.21 16 32 H 0.07 1.24 6.59 -51.93 -0.34 0.89 16 33 H 0.06 0.85 6.30 -51.93 -0.33 0.52 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.38 7.69 8.40 45.56 0.38 8.07 16 36 H 0.05 0.97 4.42 -51.93 -0.23 0.74 16 37 H 0.06 1.59 6.62 -51.93 -0.34 1.25 16 38 H 0.05 1.27 7.63 -51.93 -0.40 0.88 16 39 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 325.33 15.07 4.90 4.90 Total: -1.00 -33.31 325.33 -5.96 -39.27 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -4.52 Total: 10.37 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -0.91 Total: 8.87 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.05 Total: -41.22 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.36 Total: -37.77 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.31 -5.96 -39.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279601191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.803 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds