Wall clock time and date at job start Fri Apr 10 2020 17:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40192 * 120.36827 * 2 1 4 4 C 1.35347 * 119.94760 * 179.77347 * 3 2 1 5 5 N 1.35757 * 120.70224 * 0.51156 * 4 3 2 6 6 C 1.46503 * 119.62705 * 179.76234 * 5 4 3 7 7 C 1.53005 * 109.47131 * 269.72887 * 6 5 4 8 8 C 1.52998 * 109.47164 * 59.99845 * 7 6 5 9 9 O 1.42901 * 109.46946 * 299.99674 * 7 6 5 10 10 C 1.50700 * 109.46879 * 179.97438 * 7 6 5 11 11 O 1.21283 * 120.00393 * 340.80052 * 10 7 6 12 12 N 1.34777 * 119.99593 * 160.79619 * 10 7 6 13 13 C 1.46502 * 120.00180 * 354.54852 * 12 10 7 14 14 C 1.37098 * 119.99732 * 174.82762 * 12 10 7 15 15 H 1.07995 * 120.00066 * 339.98430 * 14 12 10 16 16 C 1.38956 * 119.99706 * 159.99052 * 14 12 10 17 17 N 1.31407 * 120.00119 * 342.79926 * 16 14 12 18 18 Si 1.86803 * 119.99745 * 162.80050 * 16 14 12 19 19 H 1.48500 * 109.46911 * 94.98428 * 18 16 14 20 20 H 1.48502 * 109.46739 * 214.98120 * 18 16 14 21 21 H 1.48497 * 109.47311 * 334.98254 * 18 16 14 22 22 C 1.34655 * 120.75242 * 359.48682 * 5 4 3 23 23 O 1.22064 * 119.98833 * 180.27670 * 22 5 4 24 24 C 1.36402 * 120.36704 * 180.02562 * 2 1 3 25 25 H 1.09006 * 109.46675 * 269.97466 * 1 2 3 26 26 H 1.08998 * 109.47138 * 29.97190 * 1 2 3 27 27 H 1.08998 * 109.47099 * 149.97601 * 1 2 3 28 28 H 1.08007 * 120.02424 * 0.04584 * 3 2 1 29 29 H 1.08007 * 119.64544 * 180.27443 * 4 3 2 30 30 H 1.08990 * 109.47552 * 149.72320 * 6 5 4 31 31 H 1.09008 * 109.46898 * 29.72217 * 6 5 4 32 32 H 1.08998 * 109.46921 * 180.02562 * 8 7 6 33 33 H 1.09006 * 109.46778 * 299.99775 * 8 7 6 34 34 H 1.08999 * 109.47389 * 59.99627 * 8 7 6 35 35 H 0.96701 * 113.99564 * 300.00086 * 9 7 6 36 36 H 1.09000 * 109.46583 * 34.01856 * 13 12 10 37 37 H 1.08999 * 109.47062 * 154.01817 * 13 12 10 38 38 H 1.08999 * 109.47338 * 274.02139 * 13 12 10 39 39 H 0.96998 * 120.00111 * 180.02562 * 17 16 14 40 40 H 1.07992 * 120.34534 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1996 0.0046 5 7 4.2538 0.0273 -0.0011 6 6 5.7187 0.0441 -0.0012 7 6 6.2286 0.0501 -1.4438 8 6 5.7043 1.2934 -2.1649 9 8 5.7657 -1.1221 -2.1174 10 6 7.7355 0.0680 -1.4438 11 8 8.3379 0.4206 -0.4519 12 7 8.4138 -0.3080 -2.5460 13 6 7.6926 -0.8468 -3.7018 14 6 9.7793 -0.1915 -2.5836 15 1 10.2833 0.4765 -1.9009 16 6 10.5149 -0.9329 -3.5002 17 7 9.9721 -1.9747 -4.0892 18 14 12.2753 -0.4487 -3.8950 19 1 13.2070 -1.2345 -3.0466 20 1 12.5558 -0.7264 -5.3266 21 1 12.4627 0.9996 -3.6257 22 6 3.6017 -1.1508 -0.0012 23 8 4.2312 -2.1966 -0.0013 24 6 2.1966 -1.1769 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6822 2.1486 0.0007 29 1 4.1103 2.1344 0.0091 30 1 6.0923 -0.8416 0.5126 31 1 6.0718 0.9383 0.5127 32 1 6.0672 1.2974 -3.1926 33 1 4.6143 1.2809 -2.1648 34 1 6.0573 2.1875 -1.6510 35 1 6.0606 -1.9499 -1.7139 36 1 6.7230 -0.3560 -3.7860 37 1 8.2712 -0.6661 -4.6077 38 1 7.5469 -1.9192 -3.5715 39 1 10.4857 -2.4925 -4.7287 40 1 1.6683 -2.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279601191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:55 Heat of formation + Delta-G solvation = -94.577299 kcal Electronic energy + Delta-G solvation = -24732.911472 eV Core-core repulsion = 21127.083847 eV Total energy + Delta-G solvation = -3605.827624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.53656 -40.87813 -38.01418 -37.95466 -36.87286 -35.94306 -33.60264 -32.55560 -30.98523 -29.81546 -28.25333 -27.40244 -26.68183 -24.55611 -23.83804 -22.31054 -20.81330 -19.41487 -18.81557 -18.43671 -17.64467 -17.35953 -16.99573 -16.89627 -16.43003 -15.96923 -15.66079 -15.22163 -15.07488 -14.99286 -14.84078 -14.11380 -13.71351 -13.59751 -13.44901 -13.42542 -13.35003 -13.30198 -13.12162 -12.94261 -12.79101 -12.66406 -12.53724 -12.36917 -12.25260 -12.13826 -11.54057 -11.01725 -10.95896 -10.62363 -10.07946 -9.77195 -8.88912 -8.39855 -6.02424 -0.03620 0.99994 1.32275 1.38731 1.52385 1.62497 1.85147 2.23775 2.67543 2.94698 3.02548 3.16867 3.55933 3.61075 3.77459 3.87405 3.90550 4.09924 4.24214 4.40891 4.46271 4.54670 4.65069 4.68817 4.81844 4.86569 4.89053 4.97241 5.03049 5.10580 5.18475 5.30834 5.37499 5.40577 5.54943 5.74316 5.97309 6.19192 6.29899 6.48298 7.07547 7.11550 7.39000 7.91772 8.61366 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.036631 B = 0.003930 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.202386 B = 7123.558457 C = 7308.565735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.031 3.969 3 C -0.225 4.225 4 C 0.128 3.872 5 N -0.484 5.484 6 C 0.094 3.906 7 C 0.124 3.876 8 C -0.134 4.134 9 O -0.544 6.544 10 C 0.407 3.593 11 O -0.628 6.628 12 N -0.440 5.440 13 C 0.134 3.866 14 C -0.353 4.353 15 H 0.079 0.921 16 C -0.002 4.002 17 N -0.890 5.890 18 Si 0.992 3.008 19 H -0.277 1.277 20 H -0.267 1.267 21 H -0.265 1.265 22 C 0.502 3.498 23 O -0.608 6.608 24 C -0.287 4.287 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.186 0.814 29 H 0.195 0.805 30 H 0.071 0.929 31 H 0.124 0.876 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.378 0.622 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.033 0.967 39 H 0.275 0.725 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.051 9.673 3.784 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.027 3.973 3 C -0.247 4.247 4 C 0.002 3.998 5 N -0.193 5.193 6 C -0.029 4.029 7 C 0.079 3.921 8 C -0.191 4.191 9 O -0.350 6.350 10 C 0.195 3.805 11 O -0.517 6.517 12 N -0.157 5.157 13 C -0.009 4.009 14 C -0.480 4.480 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.528 5.528 18 Si 0.815 3.185 19 H -0.202 1.202 20 H -0.191 1.191 21 H -0.189 1.189 22 C 0.307 3.693 23 O -0.495 6.495 24 C -0.308 4.308 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.203 0.797 29 H 0.212 0.788 30 H 0.090 0.910 31 H 0.142 0.858 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.227 0.773 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.562 9.457 3.672 21.153 hybrid contribution 1.652 -1.083 0.144 1.981 sum -16.909 8.374 3.816 19.252 Atomic orbital electron populations 1.21020 0.87842 1.04643 1.04196 1.20623 0.98492 0.91942 0.86239 1.21038 0.91847 0.99926 1.11907 1.22709 0.94481 0.89802 0.92797 1.45365 1.07751 1.07675 1.58499 1.22151 0.78070 1.05783 0.96931 1.21465 0.88708 0.89346 0.92554 1.21893 1.02508 0.93621 1.01042 1.86508 1.76759 1.15603 1.56127 1.21291 0.90670 0.85497 0.83001 1.90480 1.71325 1.55811 1.34070 1.43856 1.06324 1.52903 1.12584 1.21482 0.94064 0.97360 0.88025 1.19756 0.82532 1.24913 1.20834 0.90341 1.26187 1.04200 0.93733 0.96393 1.70146 1.39769 1.14966 1.27881 0.84951 0.76646 0.78921 0.77990 1.20232 1.19127 1.18935 1.17558 0.90236 0.82611 0.78873 1.90883 1.70276 1.32263 1.56101 1.21881 0.91229 1.00843 1.16893 0.88718 0.88487 0.90895 0.79671 0.78779 0.91038 0.85768 0.91696 0.89279 0.88812 0.77306 0.90960 0.93252 0.94806 0.91548 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 10.03 71.24 0.71 -0.42 16 2 C 0.03 0.53 5.89 -19.82 -0.12 0.42 16 3 C -0.22 -3.04 9.71 22.08 0.21 -2.82 16 4 C 0.13 2.24 8.13 83.42 0.68 2.92 16 5 N -0.48 -13.45 2.33 -650.97 -1.52 -14.97 16 6 C 0.09 3.13 4.11 86.38 0.36 3.48 16 7 C 0.12 4.60 0.72 -11.54 -0.01 4.59 16 8 C -0.13 -3.81 7.93 71.98 0.57 -3.24 16 9 O -0.54 -21.58 8.47 -139.91 -1.19 -22.76 16 10 C 0.41 19.94 6.58 87.66 0.58 20.52 16 11 O -0.63 -34.57 15.73 -3.04 -0.05 -34.62 16 12 N -0.44 -23.27 3.02 -658.89 -1.99 -25.26 16 13 C 0.13 6.38 7.36 127.77 0.94 7.32 16 14 C -0.35 -20.31 9.29 84.04 0.78 -19.53 16 15 H 0.08 4.74 7.44 -2.91 -0.02 4.72 16 16 C 0.00 -0.13 4.97 84.93 0.42 0.29 16 17 N -0.89 -48.79 10.82 21.66 0.23 -48.55 16 18 Si 0.99 42.62 29.59 68.60 2.03 44.65 16 19 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 22 C 0.50 16.88 6.91 84.82 0.59 17.46 16 23 O -0.61 -26.16 15.38 3.55 0.05 -26.11 16 24 C -0.29 -7.48 9.65 22.40 0.22 -7.27 16 25 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.10 0.50 8.10 -2.39 -0.02 0.48 16 27 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 28 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 29 H 0.20 1.96 7.93 -2.91 -0.02 1.94 16 30 H 0.07 2.87 7.39 -2.39 -0.02 2.86 16 31 H 0.12 3.64 7.77 -2.38 -0.02 3.62 16 32 H 0.06 2.01 6.59 -2.39 -0.02 1.99 16 33 H 0.09 2.08 6.30 -2.38 -0.02 2.07 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.38 16.18 8.40 -74.06 -0.62 15.56 16 36 H 0.07 3.01 4.42 -2.39 -0.01 3.00 16 37 H 0.05 2.47 6.62 -2.39 -0.02 2.46 16 38 H 0.03 1.70 7.63 -2.39 -0.02 1.69 16 39 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 40 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -77.68 325.33 3.95 -73.73 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.45 Total: 30.16 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: 5.93 Total: 23.73 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -3.27 Total: -88.78 kcal Atomic # 8 Polarization: -82.31 SS G_CDS: -1.18 Total: -83.49 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -77.68 3.95 -73.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279601191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.849 kcal (2) G-P(sol) polarization free energy of solvation -77.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds