Wall clock time and date at job start Fri Apr 10 2020 17:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99732 * 2 1 4 4 C 1.53006 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.46941 * 184.99866 * 4 3 2 6 6 C 1.52998 * 109.47275 * 305.00122 * 4 3 2 7 7 O 1.42904 * 109.47177 * 54.99824 * 6 4 3 8 8 N 1.46503 * 109.46832 * 64.99824 * 4 3 2 9 9 C 1.34779 * 119.99475 * 154.99692 * 8 4 3 10 10 O 1.21576 * 120.00114 * 0.02562 * 9 8 4 11 11 N 1.34777 * 119.99700 * 180.02562 * 9 8 4 12 12 C 1.39240 * 120.00112 * 174.86062 * 11 9 8 13 13 C 1.39480 * 119.83228 * 325.32455 * 12 11 9 14 14 C 1.36376 * 120.17124 * 179.75988 * 13 12 11 15 15 C 1.40874 * 119.82448 * 0.51278 * 14 13 12 16 16 C 1.41150 * 120.16087 * 179.71888 * 15 14 13 17 17 H 1.08004 * 119.99973 * 205.37226 * 16 15 14 18 18 C 1.39895 * 120.00235 * 25.37347 * 16 15 14 19 19 N 1.30875 * 119.99995 * 16.81503 * 18 16 15 20 20 Si 1.86801 * 120.00044 * 196.81595 * 18 16 15 21 21 H 1.48508 * 109.47018 * 89.99644 * 20 18 16 22 22 H 1.48499 * 109.47543 * 209.99899 * 20 18 16 23 23 H 1.48502 * 109.47156 * 330.00203 * 20 18 16 24 24 C 1.40868 * 119.67159 * 359.74200 * 15 14 13 25 25 C 1.36373 * 119.82800 * 0.02562 * 24 15 14 26 26 H 1.08997 * 109.47685 * 300.00166 * 1 2 3 27 27 H 1.09003 * 109.47139 * 59.99947 * 1 2 3 28 28 H 1.09008 * 109.46852 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47026 * 60.00467 * 3 2 1 30 30 H 1.08996 * 109.47181 * 299.99707 * 3 2 1 31 31 H 1.08996 * 109.47330 * 174.99805 * 6 4 3 32 32 H 1.09001 * 109.47387 * 295.00113 * 6 4 3 33 33 H 0.96699 * 113.99937 * 180.02562 * 7 6 4 34 34 H 0.96998 * 120.00150 * 335.00076 * 8 4 3 35 35 H 0.97000 * 120.00054 * 354.85895 * 11 9 8 36 36 H 1.08008 * 119.91478 * 0.02562 * 13 12 11 37 37 H 1.08002 * 120.08963 * 180.25502 * 14 13 12 38 38 H 0.97005 * 120.00187 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.08086 * 179.97438 * 24 15 14 40 40 H 1.08004 * 119.91322 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 6 3.9781 0.3199 1.1826 7 8 3.3067 -0.9405 1.1284 8 7 3.9766 0.5640 -1.2509 9 6 5.2208 0.7941 -1.7151 10 8 5.9771 1.5163 -1.0951 11 7 5.6266 0.2234 -2.8668 12 6 6.8712 0.5444 -3.4021 13 6 7.3732 1.8384 -3.2639 14 6 8.5936 2.1590 -3.7813 15 6 9.3429 1.1822 -4.4660 16 6 10.6042 1.5078 -5.0095 17 1 10.9921 0.9478 -5.8475 18 6 11.3520 2.5561 -4.4625 19 7 11.0605 3.0165 -3.2726 20 14 12.7666 3.2986 -5.4306 21 1 12.2624 4.4218 -6.2610 22 1 13.7992 3.8030 -4.4901 23 1 13.3626 2.2613 -6.3104 24 6 8.8269 -0.1211 -4.6061 25 6 7.6070 -0.4279 -4.0792 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.6885 1.8464 0.8901 30 1 1.6886 1.8464 -0.8900 31 1 5.0551 0.1602 1.1327 32 1 3.7284 0.8246 2.1158 33 1 3.5394 -1.5414 1.8494 34 1 3.3733 -0.0125 -1.7454 35 1 5.0515 -0.4109 -3.3227 36 1 6.7958 2.5873 -2.7421 37 1 8.9828 3.1603 -3.6699 38 1 11.5787 3.7436 -2.8935 39 1 9.3955 -0.8750 -5.1302 40 1 7.2099 -1.4266 -4.1862 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280478216.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:57 Heat of formation + Delta-G solvation = -95.783540 kcal Electronic energy + Delta-G solvation = -23285.183652 eV Core-core repulsion = 19679.303721 eV Total energy + Delta-G solvation = -3605.879931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.97892 -38.41769 -37.27543 -36.46305 -34.53822 -34.06333 -32.87105 -30.37461 -29.39428 -28.57751 -27.01300 -25.39757 -24.82012 -22.02972 -21.18617 -20.52205 -19.89827 -18.08775 -17.27628 -17.23986 -16.85348 -16.28832 -15.97074 -15.42099 -15.13315 -14.70158 -14.51178 -14.05861 -13.86366 -13.65500 -13.18148 -12.80668 -12.62843 -12.55849 -12.15630 -11.97502 -11.73256 -11.53447 -11.43613 -11.10798 -11.06180 -10.86949 -10.45768 -10.01090 -9.88126 -9.79048 -9.71215 -9.46332 -9.19500 -8.78260 -8.62740 -7.44481 -6.90525 -6.65690 -4.21737 2.74695 3.07994 3.11835 3.14509 3.15262 3.22169 3.63480 3.81697 3.98883 4.34062 4.63806 4.72896 4.79383 4.94985 5.10049 5.20194 5.23027 5.37635 5.39831 5.49318 5.68134 5.78283 5.82279 6.23059 6.44839 6.71470 6.90701 6.92780 7.04343 7.12467 7.19199 7.37437 7.46207 7.69185 7.72270 7.95669 8.08797 8.12964 8.34285 8.60656 8.70663 8.96119 9.00945 9.22550 10.27023 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.036070 B = 0.002926 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.081759 B = 9567.026235 C = 9834.652519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.055 3.945 4 C 0.172 3.828 5 H 0.112 0.888 6 C 0.065 3.935 7 O -0.545 6.545 8 N -0.737 5.737 9 C 0.694 3.306 10 O -0.580 6.580 11 N -0.667 5.667 12 C 0.017 3.983 13 C -0.087 4.087 14 C -0.153 4.153 15 C 0.103 3.897 16 C -0.461 4.461 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.791 5.791 20 Si 0.908 3.092 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.214 4.214 25 C -0.108 4.108 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.366 0.634 34 H 0.399 0.601 35 H 0.391 0.609 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.280 0.720 39 H 0.095 0.905 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.416 -3.413 6.636 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C -0.022 4.022 4 C 0.066 3.934 5 H 0.129 0.871 6 C -0.015 4.015 7 O -0.348 6.348 8 N -0.394 5.394 9 C 0.395 3.605 10 O -0.458 6.458 11 N -0.313 5.313 12 C -0.075 4.075 13 C -0.107 4.107 14 C -0.173 4.173 15 C 0.101 3.899 16 C -0.491 4.491 17 H 0.095 0.905 18 C -0.144 4.144 19 N -0.417 5.417 20 Si 0.733 3.267 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.234 4.234 25 C -0.128 4.128 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.211 0.789 34 H 0.232 0.768 35 H 0.223 0.777 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.794 -2.443 6.856 18.303 hybrid contribution 0.163 -0.231 -0.128 0.310 sum -16.631 -2.674 6.728 18.139 Atomic orbital electron populations 1.22720 0.82267 1.02460 0.99355 1.88187 1.18158 1.25887 1.95116 1.22760 0.92739 0.86070 1.00645 1.20936 0.91957 0.97119 0.83395 0.87055 1.22549 0.96439 0.85718 0.96780 1.86704 1.68991 1.26352 1.52732 1.44970 1.14224 1.54382 1.25831 1.16046 0.81836 0.81499 0.81140 1.90931 1.53465 1.42147 1.59222 1.42102 1.18916 1.47058 1.23240 1.16982 0.87338 0.94612 1.08614 1.20430 0.96964 0.93832 0.99452 1.20983 0.93207 1.00052 1.03096 1.17653 0.92362 0.90169 0.89740 1.19521 1.01461 1.13540 1.14586 0.90479 1.25919 0.98629 0.95694 0.94142 1.69868 1.37024 1.21743 1.13040 0.86321 0.80268 0.79914 0.80220 1.19346 1.20395 1.18692 1.20537 0.97008 0.96522 1.09359 1.20027 0.95246 0.95692 1.01885 0.94593 0.94624 0.89850 0.92287 0.92821 0.92910 0.93640 0.78936 0.76756 0.77659 0.88097 0.86279 0.90903 0.88697 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.36 -3.78 8.00 -58.58 -0.47 -4.25 16 3 C 0.06 0.54 5.68 37.16 0.21 0.75 16 4 C 0.17 2.13 2.86 -67.93 -0.19 1.93 16 5 H 0.11 1.45 7.58 -51.93 -0.39 1.06 16 6 C 0.06 0.78 6.85 37.16 0.25 1.03 16 7 O -0.54 -6.31 11.17 -58.58 -0.65 -6.97 16 8 N -0.74 -10.42 5.01 -58.68 -0.29 -10.72 16 9 C 0.69 13.07 8.25 -86.92 -0.72 12.35 16 10 O -0.58 -13.40 13.74 5.30 0.07 -13.33 16 11 N -0.67 -12.48 5.31 -14.10 -0.07 -12.55 16 12 C 0.02 0.40 6.27 -83.57 -0.52 -0.13 16 13 C -0.09 -2.22 8.57 -39.79 -0.34 -2.56 16 14 C -0.15 -4.20 8.63 -39.26 -0.34 -4.54 16 15 C 0.10 2.83 5.57 -106.80 -0.59 2.24 16 16 C -0.46 -12.48 9.04 -37.86 -0.34 -12.82 16 17 H 0.08 1.99 7.90 -52.48 -0.41 1.57 16 18 C 0.07 1.90 5.15 -17.34 -0.09 1.82 16 19 N -0.79 -21.31 10.94 55.54 0.61 -20.70 16 20 Si 0.91 19.08 29.59 -169.99 -5.03 14.05 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.21 -5.33 9.74 -39.26 -0.38 -5.71 16 25 C -0.11 -2.45 9.89 -39.79 -0.39 -2.85 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.37 2.88 9.12 45.56 0.42 3.29 16 34 H 0.40 4.94 8.40 -40.82 -0.34 4.60 16 35 H 0.39 5.82 8.83 -40.82 -0.36 5.46 16 36 H 0.10 2.59 6.48 -52.48 -0.34 2.25 16 37 H 0.12 3.37 6.18 -52.49 -0.32 3.05 16 38 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 39 H 0.09 2.20 8.06 -52.48 -0.42 1.78 16 40 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -33.09 338.48 -7.78 -40.87 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -4.70 Total: 15.64 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -2.34 Total: -7.15 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.24 Total: -43.97 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -1.05 Total: -24.55 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.09 -7.78 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280478216.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.910 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds