Wall clock time and date at job start Fri Apr 10 2020 17:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47323 * 347.49365 * 3 2 1 5 5 C 1.37097 * 120.00382 * 264.36051 * 4 3 2 6 6 H 1.08004 * 120.00103 * 192.09396 * 5 4 3 7 7 C 1.38954 * 119.99979 * 12.10256 * 5 4 3 8 8 N 1.31412 * 119.99696 * 22.92644 * 7 5 4 9 9 Si 1.86797 * 120.00121 * 202.93040 * 7 5 4 10 10 H 1.48494 * 109.47136 * 94.97873 * 9 7 5 11 11 H 1.48496 * 109.47257 * 214.98519 * 9 7 5 12 12 H 1.48504 * 109.47144 * 334.98330 * 9 7 5 13 13 C 1.34781 * 119.99914 * 84.36209 * 4 3 2 14 14 O 1.21284 * 120.00257 * 173.73903 * 13 4 3 15 15 C 1.50701 * 119.99563 * 353.74307 * 13 4 3 16 16 H 1.08999 * 109.47581 * 339.79888 * 15 13 4 17 17 N 1.46503 * 109.46810 * 219.79607 * 15 13 4 18 18 C 1.34778 * 119.99665 * 155.00479 * 17 15 13 19 19 O 1.21282 * 119.99947 * 359.97438 * 18 17 15 20 20 C 1.50702 * 119.99704 * 179.97438 * 18 17 15 21 21 C 1.52991 * 117.49832 * 248.61906 * 20 18 17 22 22 C 1.52999 * 117.49571 * 179.97438 * 20 18 17 23 23 C 1.53000 * 109.47050 * 99.79899 * 15 13 4 24 24 H 1.09002 * 109.47393 * 63.85894 * 23 15 13 25 25 C 1.52998 * 109.47289 * 183.85729 * 23 15 13 26 26 O 1.42904 * 109.47382 * 303.86098 * 23 15 13 27 27 H 4.40637 * 5.51396 * 180.02562 * 4 1 2 28 28 H 1.09003 * 109.46721 * 227.50132 * 3 2 1 29 29 H 1.08994 * 109.47491 * 107.50056 * 3 2 1 30 30 H 0.97005 * 119.99726 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00083 * 334.99819 * 17 15 13 32 32 H 1.09000 * 115.54923 * 34.33337 * 20 18 17 33 33 H 1.08996 * 117.49985 * 359.97438 * 21 20 18 34 34 H 1.09001 * 117.49785 * 145.02458 * 21 20 18 35 35 H 1.09002 * 117.50194 * 214.97785 * 22 20 18 36 36 H 1.08999 * 117.50167 * 0.02562 * 22 20 18 37 37 H 1.09000 * 109.47692 * 179.97438 * 25 23 15 38 38 H 1.09000 * 109.47617 * 300.00236 * 25 23 15 39 39 H 1.09008 * 109.46522 * 60.00173 * 25 23 15 40 40 H 0.96704 * 113.99548 * 292.97686 * 26 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3475 0.2991 5 6 3.4737 -1.6845 1.5841 6 1 4.0130 -2.6000 1.7780 7 6 3.1230 -0.8484 2.6371 8 7 2.1213 -0.0084 2.5034 9 14 4.0754 -0.9185 4.2425 10 1 5.1352 0.1216 4.2351 11 1 3.1501 -0.6745 5.3780 12 1 4.6980 -2.2586 4.3906 13 6 3.2519 -2.2566 -0.6891 14 8 3.7621 -3.3338 -0.4649 15 6 2.7488 -1.9344 -2.0726 16 1 2.0271 -1.1195 -2.0163 17 7 2.1045 -3.1187 -2.6460 18 6 1.1661 -2.9783 -3.6031 19 8 0.8547 -1.8716 -3.9894 20 6 0.5037 -4.1965 -4.1933 21 6 0.8182 -4.5347 -5.6518 22 6 -0.5540 -3.9710 -5.2755 23 6 3.9240 -1.5144 -2.9577 24 1 4.6121 -2.3524 -3.0700 25 6 3.4022 -1.0952 -4.3335 26 8 4.6074 -0.4150 -2.3522 27 1 -1.0498 -0.0005 -0.0001 28 1 3.0090 0.6951 0.7577 29 1 3.0092 0.3098 -0.9800 30 1 1.8767 0.5756 3.2384 31 1 2.3534 -4.0037 -2.3368 32 1 0.3502 -5.0279 -3.5053 33 1 1.5037 -3.8759 -6.1847 34 1 0.8717 -5.5889 -5.9238 35 1 -1.4028 -4.6544 -5.3000 36 1 -0.7705 -2.9415 -5.5610 37 1 4.2393 -0.7956 -4.9639 38 1 2.8810 -1.9338 -4.7954 39 1 2.7142 -0.2572 -4.2211 40 1 4.0884 0.4003 -2.3189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282031421.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:38:11 Heat of formation + Delta-G solvation = -42.662471 kcal Electronic energy + Delta-G solvation = -24861.246948 eV Core-core repulsion = 21257.670520 eV Total energy + Delta-G solvation = -3603.576428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.74549 -40.37654 -38.41083 -37.33044 -36.97770 -35.43282 -34.07171 -33.10275 -31.81497 -29.30336 -28.20720 -26.42916 -24.97355 -23.27095 -23.08334 -21.31397 -20.92600 -19.80316 -18.93339 -18.50284 -18.03013 -17.61745 -17.27595 -16.66004 -16.42805 -16.01304 -15.81250 -15.68260 -15.50244 -14.86325 -14.54225 -14.23024 -14.02877 -13.83774 -13.56083 -13.54259 -13.18707 -12.83379 -12.80061 -12.49483 -12.39900 -12.18124 -12.14087 -11.58185 -11.50745 -11.42120 -11.24441 -11.17065 -10.88781 -10.73249 -10.53833 -10.02600 -9.86142 -8.38413 -5.93384 1.29796 1.42971 1.45136 1.53948 1.66777 2.00187 2.14489 2.26450 2.32652 2.89756 2.93845 3.08529 3.38967 3.63237 3.73287 3.78249 3.85530 3.95119 3.97892 4.03130 4.20814 4.27258 4.43157 4.53187 4.76370 4.81387 4.92449 4.95036 4.97106 5.03606 5.17718 5.25844 5.31149 5.32848 5.44410 5.96126 6.35705 6.47764 6.61720 7.02837 7.06744 7.15071 7.35014 7.86907 8.60689 Molecular weight = 294.14amu Principal moments of inertia in cm(-1) A = 0.020776 B = 0.004940 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.380563 B = 5666.232512 C = 5854.097591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.161 4.161 3 C 0.231 3.769 4 N -0.434 5.434 5 C -0.353 4.353 6 H 0.080 0.920 7 C 0.006 3.994 8 N -0.868 5.868 9 Si 0.985 3.015 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.276 1.276 13 C 0.443 3.557 14 O -0.621 6.621 15 C 0.114 3.886 16 H 0.093 0.907 17 N -0.700 5.700 18 C 0.540 3.460 19 O -0.564 6.564 20 C -0.210 4.210 21 C -0.135 4.135 22 C -0.143 4.143 23 C 0.107 3.893 24 H 0.094 0.906 25 C -0.159 4.159 26 O -0.562 6.562 27 H 0.232 0.768 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.274 0.726 31 H 0.411 0.589 32 H 0.139 0.861 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.590 -2.511 -13.581 14.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.162 4.162 3 C 0.109 3.891 4 N -0.150 5.150 5 C -0.480 4.480 6 H 0.098 0.902 7 C -0.198 4.198 8 N -0.505 5.505 9 Si 0.809 3.191 10 H -0.191 1.191 11 H -0.202 1.202 12 H -0.201 1.201 13 C 0.232 3.768 14 O -0.508 6.508 15 C 0.004 3.996 16 H 0.111 0.889 17 N -0.354 5.354 18 C 0.328 3.672 19 O -0.444 6.444 20 C -0.231 4.231 21 C -0.172 4.172 22 C -0.181 4.181 23 C 0.046 3.954 24 H 0.112 0.888 25 C -0.216 4.216 26 O -0.369 6.369 27 H 0.248 0.752 28 H 0.123 0.877 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.247 0.753 32 H 0.157 0.843 33 H 0.112 0.888 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -3.156 -2.490 -13.522 14.107 hybrid contribution -0.225 0.056 1.492 1.510 sum -3.380 -2.434 -12.030 12.731 Atomic orbital electron populations 1.25165 0.96419 1.00135 1.04194 1.23538 0.95101 1.00243 0.97333 1.18532 0.84203 0.85688 1.00702 1.43717 1.54564 1.09839 1.06867 1.19631 1.36396 1.09339 0.82624 0.90241 1.25942 0.95671 0.96098 1.02093 1.70209 1.22526 1.23464 1.34329 0.85054 0.78329 0.78729 0.77015 1.19053 1.20219 1.20115 1.20355 0.84788 0.84498 0.87130 1.90463 1.50255 1.25839 1.84222 1.21444 0.96686 0.90368 0.91070 0.88876 1.45645 1.40407 1.09408 1.39917 1.20258 0.77861 0.90783 0.78259 1.90663 1.64013 1.27923 1.61780 1.22225 1.07554 0.98288 0.95018 1.23071 0.98808 1.03805 0.91503 1.23034 0.93339 1.03294 0.98410 1.22151 0.92010 0.89832 0.91402 0.88796 1.22403 1.01357 1.02584 0.95302 1.86682 1.44944 1.22231 1.83078 0.75153 0.87706 0.89421 0.91542 0.75270 0.84341 0.88795 0.85043 0.85577 0.89046 0.90493 0.91727 0.91936 0.76601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.94 19.25 74.32 1.43 -8.51 16 2 C -0.16 -7.26 10.60 31.13 0.33 -6.93 16 3 C 0.23 10.36 4.76 84.58 0.40 10.76 16 4 N -0.43 -22.23 2.60 -645.42 -1.68 -23.91 16 5 C -0.35 -19.79 9.42 84.04 0.79 -19.00 16 6 H 0.08 4.80 7.31 -2.91 -0.02 4.78 16 7 C 0.01 0.30 4.90 84.93 0.42 0.72 16 8 N -0.87 -44.68 9.41 21.66 0.20 -44.47 16 9 Si 0.98 41.72 29.61 68.60 2.03 43.76 16 10 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 11 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.44 21.71 6.19 87.66 0.54 22.25 16 14 O -0.62 -34.01 15.95 -3.04 -0.05 -34.06 16 15 C 0.11 4.40 1.80 44.25 0.08 4.48 16 16 H 0.09 3.77 4.99 -2.39 -0.01 3.76 16 17 N -0.70 -23.69 5.00 -446.08 -2.23 -25.92 16 18 C 0.54 16.45 6.13 87.66 0.54 16.99 16 19 O -0.56 -19.82 13.39 -3.04 -0.04 -19.86 16 20 C -0.21 -4.53 6.19 -11.54 -0.07 -4.61 16 21 C -0.13 -2.15 10.24 30.60 0.31 -1.83 16 22 C -0.14 -2.57 10.05 30.61 0.31 -2.26 16 23 C 0.11 3.59 3.37 30.59 0.10 3.70 16 24 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 25 C -0.16 -4.43 8.05 71.98 0.58 -3.85 16 26 O -0.56 -19.15 12.14 -148.98 -1.81 -20.95 16 27 H 0.23 7.54 7.80 -4.43 -0.03 7.51 16 28 H 0.11 4.99 6.09 -2.39 -0.01 4.98 16 29 H 0.09 3.28 4.07 -2.39 -0.01 3.27 16 30 H 0.27 13.31 8.31 -92.70 -0.77 12.54 16 31 H 0.41 13.60 8.03 -92.71 -0.74 12.85 16 32 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.97 7.67 -2.39 -0.02 1.95 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 1.82 5.67 -2.39 -0.01 1.81 16 39 H 0.06 1.79 7.78 -2.38 -0.02 1.77 16 40 H 0.38 10.52 7.03 -74.05 -0.52 10.00 16 Total: -1.00 -70.02 333.99 2.02 -68.00 By element: Atomic # 1 Polarization: 45.67 SS G_CDS: -0.17 Total: 45.50 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 5.76 Total: 11.92 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -3.71 Total: -94.30 kcal Atomic # 8 Polarization: -72.97 SS G_CDS: -1.90 Total: -74.87 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.76 kcal Total: -70.02 2.02 -68.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282031421.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.336 kcal (2) G-P(sol) polarization free energy of solvation -70.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds